remoteviz/UseCase1_vmd.md

@@ -12,42 +12,41 @@ establish a TurboVNC connection to the MPCDF remote visualization service [[as d
 ~>vglrun vmd
 ```
 
-### Instructions for working with the GUI (_assessment of UseCase1 is work in progress_)
+### Instructions for working with the GUI 
+
+(_assessment of UseCase1 is work in progress_)
 
 ![vmd_screenshot1](vmd_screenshot-1.png "Fig 1")
 
-   1. predefine some default view and enable comprehensive analysis work
+* predefine some default view and enable comprehensive analysis work
    flows for the user (Fig 1).
    - save and load views.
    - use different graphic representations - points, bonds, `VDW'
    - atoms as spheres
    
 
-   2. basic user interaction:
-   a) start, pause, continue time evolution
-   - load different molecules and switch between them (screenshots
-   04 and 05). 
+* basic user interaction:
+   * start, pause, continue time evolution
+   - load different molecules and switch between them 
    - no default "player" functionality like in VisIt or ParaView
    
-   b) rotate, transfer, zoom in or out, change the number of shown unit
-   cells
-   - all works 
+   * rotate, transfer, zoom in or out, change the number of shown unit
+   cells (_works_) 
 
-   c) determine species type and atom number by clicking the sphere
+   * determine species type and atom number by clicking the sphere
    representing that atom
-   - types of analysis (Figs 2,3,4) but from the menu and not by simply clicking on the atom. The window is not
+   - different types of analysis (Figs 2,3,4) but from the menu and not by simply clicking on the atom. The window is not
    interactive.
 
-   d) change the iso-value for the density, colour scale for the
-   volumetric data
-   - not yet identified
+   * change the iso-value for the density, colour scale for the
+   volumetric data (_not yet identified_)
+
+* calculate the density integral within a 3D box selection (_not yet identified_)
+
+* display distances, angles, and dihedral angles by selecting atoms (_not yet identified_)
+
+* interactively replicate the unit cell (_not yet identified_)
 
-   4. calculate the density integral within a 3D box selection
-   - not yet identified
-   5. display distances, angles, and dihedral angles by selecting atoms
-   - not yet identified
-   6. interactively replicate the unit cell
-   - not yet identified
 
 ![vmd_screenshot1](vmd_screenshot-2.png "Fig 2")