From c7314bd4d734562f59ef7209cb7abab88b9a5637 Mon Sep 17 00:00:00 2001
From: Adam Fekete <adam.fekete@kcl.ac.uk>
Date: Wed, 28 Sep 2016 14:17:01 +0100
Subject: [PATCH] fixing missign log file issue
---
parser/parser-lammps/LammpsLogParser.py | 18 +++++++++++-------
1 file changed, 11 insertions(+), 7 deletions(-)
diff --git a/parser/parser-lammps/LammpsLogParser.py b/parser/parser-lammps/LammpsLogParser.py
index 73c86dd..4525ff8 100644
--- a/parser/parser-lammps/LammpsLogParser.py
+++ b/parser/parser-lammps/LammpsLogParser.py
@@ -1264,25 +1264,28 @@ class LammpsMainParser(MainHierarchicalParser):
'''Change the file reader according to the log file
'''
- line = parser.fIn.readline()
-
# self.compile_log_parser()
+ line = parser.fIn.readline()
filename = line.split()[1]
dir_name = os.path.dirname(os.path.abspath(self.fName))
f_name = os.path.normpath(os.path.join(dir_name, filename))
- # close the file reader of the actual log file
- parser.fIn.fIn.close()
-
try:
- # owerwrite and open the file reader of the new log file
- parser.fIn = PushbackLineFile(open(f_name, 'r'))
+ fIn = open(f_name, 'r')
except IOError:
logger.error("LOG file parsing unsuccessful. Could not find %s file in directory '%s' (%s)." % (f_name, dir_name, f_name))
+ return None
+
+ # close the file reader of the actual log file
+ parser.fIn.fIn.close()
+
+ # owerwrite and open the file reader of the new log file
+ parser.fIn = PushbackLineFile(fIn)
+
@@ -1985,6 +1988,7 @@ class LammpsMainParser(MainHierarchicalParser):
# run_filt = [x for x in storeInput if x.startswith("run")] # OK FOR A SINGLE RUN INPUT SCRIPT
run_filt = self.run
+ steps = 0
for line in run_filt:
line_split = line.split()
steps = int(line_split[1])
--
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