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nomad-lab
parser-gpaw
Commits
dabe80e1
Commit
dabe80e1
authored
Jul 12, 2017
by
Mikkel Strange
Browse files
Merge branch 'ulm' into 'master'
fix for new ulm reader See merge request !2
parents
bc6a61ab
cf3ddce8
Changes
1
Show whitespace changes
Inline
Side-by-side
parser/parser-gpaw/parser2.py
View file @
dabe80e1
...
@@ -26,7 +26,6 @@ def open_section(p, name):
...
@@ -26,7 +26,6 @@ def open_section(p, name):
def
c
(
value
,
unit
=
None
):
def
c
(
value
,
unit
=
None
):
""" Dummy function for unit conversion"""
""" Dummy function for unit conversion"""
return
value
return
cu
(
value
,
unit
)
return
cu
(
value
,
unit
)
...
@@ -85,7 +84,7 @@ def parse(filename):
...
@@ -85,7 +84,7 @@ def parse(filename):
p
.
addArrayValues
(
'atom_positions'
,
c
(
r
.
atoms
.
positions
,
'angstrom'
))
p
.
addArrayValues
(
'atom_positions'
,
c
(
r
.
atoms
.
positions
,
'angstrom'
))
p
.
addArrayValues
(
'configuration_periodic_dimensions'
,
p
.
addArrayValues
(
'configuration_periodic_dimensions'
,
np
.
array
(
r
.
atoms
.
pbc
,
bool
))
np
.
array
(
r
.
atoms
.
pbc
,
bool
))
if
hasattr
(
r
.
atoms
,
'momenta'
)
:
if
'momenta'
in
r
.
atoms
:
masses
=
atomic_masses
[
r
.
atoms
.
numbers
]
masses
=
atomic_masses
[
r
.
atoms
.
numbers
]
velocities
=
r
.
atoms
.
momenta
/
masses
.
reshape
(
-
1
,
1
)
velocities
=
r
.
atoms
.
momenta
/
masses
.
reshape
(
-
1
,
1
)
p
.
addArrayValues
(
'atom_velocities'
,
p
.
addArrayValues
(
'atom_velocities'
,
...
@@ -137,10 +136,10 @@ def parse(filename):
...
@@ -137,10 +136,10 @@ def parse(filename):
c
(
r
.
occupations
.
fermilevel
,
'eV'
))
c
(
r
.
occupations
.
fermilevel
,
'eV'
))
p
.
addRealValue
(
'energy_reference_fermi'
,
p
.
addRealValue
(
'energy_reference_fermi'
,
c
(
r
.
occupations
.
fermilevel
,
'eV'
))
c
(
r
.
occupations
.
fermilevel
,
'eV'
))
if
hasattr
(
r
.
results
,
'forces'
)
:
if
'forces'
in
r
.
results
:
p
.
addArrayValues
(
'atom_forces_free_raw'
,
p
.
addArrayValues
(
'atom_forces_free_raw'
,
c
(
r
.
results
.
forces
,
'eV/angstrom'
))
c
(
r
.
results
.
forces
,
'eV/angstrom'
))
if
hasattr
(
r
.
results
,
'magmoms'
)
:
if
'magmons'
in
r
.
results
:
p
.
addArrayValues
(
'x_gpaw_magnetic_moments'
,
p
.
addArrayValues
(
'x_gpaw_magnetic_moments'
,
r
.
results
.
magmoms
)
r
.
results
.
magmoms
)
p
.
addRealValue
(
'x_gpaw_spin_Sz'
,
r
.
results
.
magmoms
.
sum
()
/
2.0
)
p
.
addRealValue
(
'x_gpaw_spin_Sz'
,
r
.
results
.
magmoms
.
sum
()
/
2.0
)
...
...
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