from __future__ import absolute_import from nomadcore.simple_parser import SimpleMatcher as SM from nomadcore.baseclasses import MainHierarchicalParser from .singlepointforceparser import CP2KSinglePointForceParser from nomadcore.caching_backend import CachingLevel from .commonmatcher import CommonMatcher import logging logger = logging.getLogger("nomad") #=============================================================================== class CP2KSinglePointParser(MainHierarchicalParser): """The main parser class. Used to parse the CP2K calculation with run types: -ENERGY -ENERGY_FORCE """ def __init__(self, file_path, parser_context): """ """ super(CP2KSinglePointParser, self).__init__(file_path, parser_context) self.setup_common_matcher(CommonMatcher(parser_context)) #======================================================================= # Cache levels self.caching_level_for_metaname.update({ 'x_cp2k_energy_total_scf_iteration': CachingLevel.ForwardAndCache, 'x_cp2k_energy_XC_scf_iteration': CachingLevel.ForwardAndCache, 'x_cp2k_energy_change_scf_iteration': CachingLevel.ForwardAndCache, 'x_cp2k_stress_tensor': CachingLevel.ForwardAndCache, 'x_cp2k_section_stress_tensor': CachingLevel.ForwardAndCache, }) #======================================================================= # SimpleMatchers self.root_matcher = SM("", forwardMatch=True, sections=['section_run', "section_single_configuration_calculation", "section_system", "section_method"], otherMetaInfo=["atom_forces"], subMatchers=[ self.cm.header(), self.cm.quickstep_header(), self.cm.quickstep_calculation(), ] ) #=========================================================================== # onClose triggers def onClose_section_single_configuration_calculation(self, backend, gIndex, section): """ """ # If the force file for a single point calculation is available, and # the forces were not parsed fro the output file, parse the separate # file if section["atom_forces"] is None: force_file = self.file_service.get_file_by_id("force_file_single_point") if force_file is not None: force_parser = CP2KSinglePointForceParser(force_file, self.parser_context) force_parser.parse() else: logger.warning("The file containing the forces printed by ENERGY_FORCE calculation could not be found.") # Only in the single configuration calculations the number of scf # iterations is given. E.g. in geometry optimization there are multiple # scf calculations so this loses it's meaning sort of. self.cache_service.push_value("number_of_scf_iterations") def onClose_x_cp2k_section_scf_iteration(self, backend, gIndex, section): """Keep track of how many SCF iteration are made.""" self.cache_service["number_of_scf_iterations"] += 1 gId = backend.openSection("section_scf_iteration") section.add_latest_value("x_cp2k_energy_total_scf_iteration", "energy_total_scf_iteration") section.add_latest_value("x_cp2k_energy_XC_scf_iteration", "energy_XC_scf_iteration") section.add_latest_value("x_cp2k_energy_change_scf_iteration", "energy_change_scf_iteration") backend.closeSection("section_scf_iteration", gId) def onClose_x_cp2k_section_quickstep_calculation(self, backend, gIndex, section): """""" section.add_latest_value("x_cp2k_energy_total", "energy_total") section.add_latest_value("x_cp2k_electronic_kinetic_energy", "electronic_kinetic_energy") section.add_latest_value("x_cp2k_quickstep_converged", "single_configuration_calculation_converged") section.add_latest_array_values("x_cp2k_atom_forces", "atom_forces") def onClose_x_cp2k_section_stress_tensor(self, backend, gIndex, section): """""" gId = backend.openSection("section_stress_tensor") section.add_latest_array_values("x_cp2k_stress_tensor", "stress_tensor") backend.closeSection("section_stress_tensor", gId) def onClose_section_system(self, backend, gIndex, section): """Stores the index of the section method. Should always be 0, but let's get it dynamically just in case there's something wrong. """ self.cache_service.push_array_values("atom_positions", unit="angstrom") #=========================================================================== # adHoc functions