diff --git a/docker/mpes/.webtop.profile b/docker/mpes/.webtop.profile
new file mode 100644
index 0000000000000000000000000000000000000000..487133edc4408b89e38783e14ae4ade0f943fec9
--- /dev/null
+++ b/docker/mpes/.webtop.profile
@@ -0,0 +1,7 @@
+# if running bash
+if [ -n "$BASH_VERSION" ]; then
+ # include .bashrc if it exists
+ if [ -f "$HOME/.bashrc" ]; then
+ . "$HOME/.bashrc"
+ fi
+fi
\ No newline at end of file
diff --git a/docker/mpes/02-exec-igor b/docker/mpes/02-exec-igor
old mode 100644
new mode 100755
index 91c751db80cb6f3279f2adcf8638f1550073a526..a05da0427e3ba46cbe9696fde6dd752043aeae1b
--- a/docker/mpes/02-exec-igor
+++ b/docker/mpes/02-exec-igor
@@ -1,4 +1,39 @@
#!/usr/bin/with-contentenv bash
# Add the command to run an app on startup
-echo "wine /config/.wine/drive_c/Program\ Files/WaveMetrics/Igor\ Pro\ 8\ Folder/IgorBinaries_x64/Igor64.exe" > /config/.config/openbox/autostart
\ No newline at end of file
+cat << EOF > /config/.config/openbox/autostart
+rm -rf "/config/.wine/drive_c/users/abc/Documents/WaveMetrics/Igor Pro 8 User Files"
+ln -s "/mnt/pcshare/igor/Igor Pro 8 User Files" "/config/.wine/drive_c/users/abc/Documents/WaveMetrics/Igor Pro 8 User Files"
+wine /config/.wine/drive_c/Program\ Files/WaveMetrics/Igor\ Pro\ 8\ Folder/IgorBinaries_x64/Igor64.exe
+EOF
+
+cat << EOF > /config/.config/openbox/menu.xml
+<?xml version="1.0" encoding="utf-8"?>
+<openbox_menu xmlns="http://openbox.org/3.4/menu">
+<menu id="root-menu" label="MENU">
+<item label="xterm" icon="/usr/share/icons/hicolor/48x48/apps/xterm-color.png"><action name="Execute"><command>/usr/bin/xterm</command></action></item>
+<item label="Featherpad" icon="/usr/share/icons/hicolor/scalable/apps/featherpad.svg"><action name="Execute"><command>/usr/bin/featherpad</command></action></item>
+<item label="Firefox" icon="/usr/share/icons/hicolor/48x48/apps/firefox.png"><action name="Execute"><command>/usr/bin/firefox</command></action></item>
+<item label="OBConf" icon="/usr/share/pixmaps/obconf.png"><action name="Execute"><command>/usr/bin/obconf</command></action></item>
+<item label="Igor" icon="/usr/share/pixmaps/obconf.png"><action name="Execute"><command>wine /config/.wine/drive_c/Program\ Files/WaveMetrics/Igor\ Pro\ 8\ Folder/IgorBinaries_x64/Igor64.exe</command></action></item>
+<item label="Reload OB"><action name="Reconfigure"/></item>
+</menu>
+</openbox_menu>
+EOF
+
+cat << EOF > /config/.config/openbox/rc.xml
+<context name="Desktop">
+ <mousebind button="Up" action="Click">
+ <action name="GoToDesktop">
+ <to>previous</to>
+ <wrap>no</wrap>
+ </action>
+ </mousebind>
+ <mousebind button="Down" action="Click">
+ <action name="GoToDesktop">
+ <to>next</to>
+ <wrap>no</wrap>
+ </action>
+ </mousebind>
+</context>
+EOF
\ No newline at end of file
diff --git a/docker/mpes/30-config b/docker/mpes/30-config
index ac3b3590e8d752e2debb6907107815287ca9afdb..1875a923a70d669b6e81caa8e316b8885ffa1269 100644
--- a/docker/mpes/30-config
+++ b/docker/mpes/30-config
@@ -20,4 +20,8 @@ touch /lock.file
# permissions
PERM=$(stat -c '%U' /config/.config)
[[ "${PERM}" != "abc" ]] && \
- chown -R abc:abc $(ls -a /config | awk '{if($1 != "." && $1 != ".." && $1 != "pcshare" && $1 != "localDataStore"){ print "/config/$1" }}')
+ chown -R abc:abc $(ls -a /config | awk '{if($1 != "." && $1 != ".." && $1 != "pcshare" && $1 != "localDataStore" && $1 != "topfloor"){ print "/config/$1" }}')
+
+echo `cat << EOF
+alias igor="wine /config/.wine/drive_c/Program\ Files/WaveMetrics/Igor\ Pro\ 8\ Folder/IgorBinaries_x64/Igor64.exe"
+EOF` >> /config/.bashrc
diff --git a/docker/mpes/Dockerfile b/docker/mpes/Dockerfile
index 42a9940dc066c41af15d2f2881579713514a08b4..c001637134068cbe2d47ab4108f07bad8123a3c8 100644
--- a/docker/mpes/Dockerfile
+++ b/docker/mpes/Dockerfile
@@ -1,17 +1,14 @@
FROM gitlab-registry.mpcdf.mpg.de/nomad-lab/nomad-remote-tools-hub/webtop:v0.0.1
-COPY requirements.webtop.in ./
-COPY requirements.jupyter.in ./
+COPY requirements.webtop.txt ./
RUN apt-get update -y \
&& apt-get install -y git pip qt5-default python3-pyqt5 pyqt5-dev-tools cargo unzip \
&& apt-get clean && rm -rf /var/lib/apt/lists/*
-RUN pip install -r requirements.jupyter.in
-RUN pip install -r requirements.webtop.in
+RUN pip install -r requirements.webtop.txt
RUN jupyter nbextension enable --py widgetsnbextension \
&& jupyter serverextension enable jupyterlab_h5web \
&& jupyter lab build
-RUN rm requirements.webtop.in
-RUN rm requirements.jupyter.in
+RUN rm requirements.webtop.txt
COPY 02-exec-cmd /config/custom-cont-init.d/02-exec-cmd
WORKDIR /config
diff --git a/docker/mpes/Dockerfile.fhi b/docker/mpes/Dockerfile.fhi
index b658cd08af8938755de96d940155af4c792eb1fd..bd257e25116869c1b0a3c3b978b00b73fb9ee290 100644
--- a/docker/mpes/Dockerfile.fhi
+++ b/docker/mpes/Dockerfile.fhi
@@ -1,23 +1,21 @@
FROM gitlab-registry.mpcdf.mpg.de/nomad-lab/nomad-remote-tools-hub/webtop:v0.0.1
-COPY requirements.webtop.in ./
-COPY requirements.jupyter.in ./
+COPY requirements.webtop.txt ./
RUN apt-get update -y \
- && apt-get install -y git pip qt5-default python3-pyqt5 pyqt5-dev-tools cargo unzip \
+ && apt-get install -y git pip qt5-default python3-pyqt5 pyqt5-dev-tools cargo unzip vim \
&& apt-get clean && rm -rf /var/lib/apt/lists/*
-RUN pip install -r requirements.jupyter.in
-RUN pip install -r requirements.webtop.in
+RUN pip install -r requirements.webtop.txt
RUN jupyter nbextension enable --py widgetsnbextension \
&& jupyter serverextension enable jupyterlab_h5web \
&& jupyter lab build
-RUN rm requirements.webtop.in
-RUN rm requirements.jupyter.in
+RUN rm requirements.webtop.txt
COPY 02-exec-cmd /config/custom-cont-init.d/02-exec-cmd
WORKDIR /config
ENV PGID=5050
COPY 30-config /etc/cont-init.d/30-config
+COPY --chown=1000:5050 .webtop.profile /config/.profile
RUN ln -s /config/pcshare /mnt/pcshare
RUN mkdir /scratch
RUN ln -s /config/localDataStore /scratch/localDataStore
diff --git a/docker/mpes/Dockerfile.igor b/docker/mpes/Dockerfile.igor
index 865da3e9b2e003522b2162c66fdc8ba43e3669d2..3d2b43fe88796ab6fe8c16804f53c475c9bdaf78 100644
--- a/docker/mpes/Dockerfile.igor
+++ b/docker/mpes/Dockerfile.igor
@@ -1,6 +1,6 @@
FROM gitlab-registry.mpcdf.mpg.de/nomad-lab/nomad-remote-tools-hub/webtop:v0.0.1
-RUN apt-get update -y && apt-get install -y wget
+RUN apt-get update -y && apt-get install -y wget vim
RUN dpkg --add-architecture i386 && \
mkdir -pm755 /etc/apt/keyrings && \
wget -O /etc/apt/keyrings/winehq-archive.key https://dl.winehq.org/wine-builds/winehq.key && \
@@ -16,8 +16,9 @@ WORKDIR /config
ENV PGID=5050
COPY 30-config /etc/cont-init.d/30-config
+COPY --chown=1000:5050 .webtop.profile /config/.profile
RUN ln -s /config/pcshare /mnt/pcshare
RUN mkdir /scratch
RUN ln -s /config/localDataStore /scratch/localDataStore
-RUN mkdir /etc/sed
-RUN ln -s /mnt/pcshare/sed/config.yaml /etc/sed/config.yaml
\ No newline at end of file
+RUN ln -s /config/topfloor /mnt/topfloor
+RUN ln -s "/mnt/pcshare/igor/Igor Pro 8 User Files" "/config/.wine/drive_c/users/abc/Documents/WaveMetrics/Igor Pro 8 User Files"
\ No newline at end of file
diff --git a/docker/mpes/example/mpes.scheme.archive.yml b/docker/mpes/example/mpes.scheme.archive.yml
index ad13375b988fba7ccf795acd307d08b3a025cb3e..4fd29d4b58cb203444fd51554ace3498f0f633a4 100644
--- a/docker/mpes/example/mpes.scheme.archive.yml
+++ b/docker/mpes/example/mpes.scheme.archive.yml
@@ -114,11 +114,6 @@ definitions:
eln:
component: NumberEditQuantity
defaultDisplayUnit: "1/angstrom"
- slow_axes:
- type: str
- m_annotations:
- eln:
- component: StringEditQuantity
Source:
section:
sub_sections:
diff --git a/docker/mpes/requirements.jupyter.in b/docker/mpes/requirements.jupyter.in
index cccb48a05130e2a6238eb2b9c4499dd500239c1f..411ecefc762903490044333653c775d6d94d8b98 100644
--- a/docker/mpes/requirements.jupyter.in
+++ b/docker/mpes/requirements.jupyter.in
@@ -1,5 +1,5 @@
nodejs
-pynxtools>0.0.3
+pynxtools>0.0.4
ipywidgets<8.0.0,>=7.0.1
h5glance>=0.8
h5grove>=1.1.0
diff --git a/docker/mpes/requirements.jupyter.txt b/docker/mpes/requirements.jupyter.txt
index c9aedd6932b58883a562196d29ff2e8e16ccef69..02452b7f302199f285eccec064579c9b6db08597 100644
--- a/docker/mpes/requirements.jupyter.txt
+++ b/docker/mpes/requirements.jupyter.txt
@@ -640,7 +640,7 @@ pygments==2.15.1
# ipython
# nbconvert
# sphinx
-pynxtools==0.0.4
+pynxtools==0.0.5
# via
# -r requirements.jupyter.in
# sed
@@ -752,7 +752,7 @@ scipy==1.8.1
# sed
# sparse
# symmetrize
-sed @ git+https://github.com/OpenCOMPES/sed.git@mpes-merged
+sed @ git+https://github.com/OpenCOMPES/sed.git@87e793e
# via -r requirements.jupyter.in
send2trash==1.8.2
# via
diff --git a/docker/mpes/requirements.webtop.txt b/docker/mpes/requirements.webtop.txt
new file mode 100644
index 0000000000000000000000000000000000000000..21f155f54e8b743af2f6289d284e078686eb16de
--- /dev/null
+++ b/docker/mpes/requirements.webtop.txt
@@ -0,0 +1,1085 @@
+#
+# This file is autogenerated by pip-compile with Python 3.8
+# by the following command:
+#
+# pip-compile
+#
+aiofiles==22.1.0
+ # via ypy-websocket
+aiosqlite==0.19.0
+ # via ypy-websocket
+alabaster==0.7.13
+ # via sphinx
+ansi2html==1.8.0
+ # via nexpy
+anyio==3.7.1
+ # via jupyter-server
+argon2-cffi==21.3.0
+ # via
+ # jupyter-server
+ # nbclassic
+ # notebook
+argon2-cffi-bindings==21.2.0
+ # via argon2-cffi
+arpes @ git+https://github.com/FAIRmat-Experimental/arpes.git
+ # via -r requirements.in
+arrow==1.2.3
+ # via isoduration
+asciitree==0.3.3
+ # via zarr
+ase==3.21.1
+ # via
+ # arpes
+ # ifes-apt-tc-data-modeling
+ # pynxtools
+asteval==0.9.31
+ # via lmfit
+astropy==5.2.2
+ # via
+ # arpes
+ # mpes
+ # photutils
+ # symmetrize
+asttokens==2.2.1
+ # via stack-data
+attrs==23.1.0
+ # via
+ # cattrs
+ # jsonschema
+ # referencing
+ # requests-cache
+babel==2.12.1
+ # via
+ # jupyterlab-server
+ # sphinx
+backcall==0.2.0
+ # via ipython
+backports-zoneinfo==0.2.1
+ # via
+ # pytz-deprecation-shim
+ # tzlocal
+beautifulsoup4==4.12.2
+ # via nbconvert
+bleach==6.0.0
+ # via nbconvert
+blosc2==2.0.0
+ # via tables
+bokeh==2.4.3
+ # via
+ # arpes
+ # dask
+ # mpes
+ # sed
+cattrs==23.1.2
+ # via requests-cache
+certifi==2023.7.22
+ # via
+ # netcdf4
+ # requests
+cffi==1.15.1
+ # via argon2-cffi-bindings
+cftime==1.6.2
+ # via netcdf4
+charset-normalizer==3.2.0
+ # via requests
+click==8.1.6
+ # via
+ # dask
+ # distributed
+ # pynxtools
+cloudpickle==2.2.1
+ # via
+ # dask
+ # distributed
+colorama==0.4.6
+ # via arpes
+colorcet==3.0.1
+ # via arpes
+comm==0.1.4
+ # via
+ # ipykernel
+ # ipywidgets
+commonmark==0.9.1
+ # via recommonmark
+contourpy==1.1.0
+ # via matplotlib
+coverage==7.2.7
+ # via mpes
+cramjam==2.7.0
+ # via fastparquet
+cycler==0.11.0
+ # via matplotlib
+cython==3.0.0
+ # via tables
+dask[array,complete]==2022.12.1
+ # via
+ # distributed
+ # hyperspy
+ # kikuchipy
+ # mpes
+ # orix
+ # pyxem
+ # sed
+debugpy==1.6.7
+ # via ipykernel
+decorator==5.1.1
+ # via
+ # ipyparallel
+ # ipython
+deepdish==0.3.7
+ # via mpes
+defusedxml==0.7.1
+ # via nbconvert
+diffpy-structure==3.1.0
+ # via
+ # diffsims
+ # kikuchipy
+ # orix
+diffsims==0.5.2
+ # via
+ # kikuchipy
+ # pyxem
+dill==0.3.7
+ # via
+ # arpes
+ # hyperspy
+distributed==2022.12.1
+ # via dask
+docutils==0.18.1
+ # via
+ # recommonmark
+ # sphinx
+ # sphinx-rtd-theme
+entrypoints==0.4
+ # via
+ # ipyparallel
+ # jupyter-client
+ # numcodecs
+exceptiongroup==1.1.2
+ # via
+ # anyio
+ # cattrs
+executing==1.2.0
+ # via stack-data
+fabio==2023.6.0
+ # via
+ # pyfai
+ # silx
+fastdtw==0.3.4
+ # via
+ # mpes
+ # sed
+fasteners==0.18
+ # via zarr
+fastjsonschema==2.18.0
+ # via nbformat
+fastparquet==0.8.3
+ # via
+ # mpes
+ # sed
+flatdict==4.0.1
+ # via pynxtools
+fonttools==4.42.0
+ # via matplotlib
+fqdn==1.5.1
+ # via jsonschema
+fsspec==2023.6.0
+ # via
+ # dask
+ # fastparquet
+ # hyperspy
+funcy==2.0
+ # via mpes
+future==0.18.3
+ # via uncertainties
+gitdb==4.0.10
+ # via gitpython
+gitpython==3.1.32
+ # via pynxtools
+h5glance==0.8.1
+ # via -r requirements.in
+h5grove==1.3.0
+ # via
+ # -r requirements.in
+ # jupyterlab-h5web
+h5py==3.9.0
+ # via
+ # -r requirements.in
+ # arpes
+ # h5glance
+ # h5grove
+ # hdf5plugin
+ # hyperspy
+ # ifes-apt-tc-data-modeling
+ # jupyterlab-h5web
+ # kikuchipy
+ # mpes
+ # nexpy
+ # nexusformat
+ # nionswift
+ # orix
+ # punx
+ # pyfai
+ # pynxtools
+ # sed
+ # silx
+hdf5plugin==4.1.3
+ # via
+ # jupyterlab-h5web
+ # nexusformat
+ # silx
+htmlgen==2.0.0
+ # via h5glance
+hyperspy==1.7.5
+ # via
+ # kikuchipy
+ # pynxtools
+ # pyxem
+idna==3.4
+ # via
+ # anyio
+ # jsonschema
+ # requests
+ifes-apt-tc-data-modeling==0.0.9
+ # via pynxtools
+igor==0.3
+ # via mpes
+imageio==2.27.0
+ # via
+ # arpes
+ # hyperspy
+ # kikuchipy
+ # mpes
+ # nionswift
+ # nionswift-io
+ # nionui
+ # scikit-image
+imagesize==1.4.1
+ # via sphinx
+importlib-metadata==6.8.0
+ # via
+ # hyperspy
+ # jupyter-ydoc
+ # jupyterlab-server
+ # nbconvert
+ # nexpy
+ # sphinx
+importlib-resources==6.0.1
+ # via
+ # jsonschema
+ # jsonschema-specifications
+ # matplotlib
+ # radioactivedecay
+ipykernel==6.25.0
+ # via
+ # ipyparallel
+ # nbclassic
+ # nexpy
+ # notebook
+ # qtconsole
+ipympl==0.9.3
+ # via sed
+ipyparallel==8.6.1
+ # via hyperspy
+ipython==8.12.2
+ # via
+ # hyperspy
+ # ipykernel
+ # ipympl
+ # ipyparallel
+ # ipywidgets
+ # jupyterlab
+ # nexpy
+ipython-genutils==0.2.0
+ # via
+ # ipympl
+ # ipywidgets
+ # nbclassic
+ # notebook
+ # qtconsole
+ipywidgets==7.8.0
+ # via
+ # -r requirements.in
+ # arpes
+ # ipympl
+ # pyxem
+ # sed
+isoduration==20.11.0
+ # via jsonschema
+jedi==0.19.0
+ # via ipython
+jinja2==3.1.2
+ # via
+ # bokeh
+ # dask
+ # distributed
+ # hyperspy
+ # jupyter-server
+ # jupyterlab
+ # jupyterlab-server
+ # nbclassic
+ # nbconvert
+ # notebook
+ # sphinx
+joblib==1.3.1
+ # via
+ # scikit-learn
+ # sed
+json5==0.9.14
+ # via jupyterlab-server
+jsonpointer==2.4
+ # via jsonschema
+jsonschema[format-nongpl]==4.19.0
+ # via
+ # jupyter-events
+ # jupyterlab-server
+ # nbformat
+jsonschema-specifications==2023.7.1
+ # via jsonschema
+jupyter-client==7.4.9
+ # via
+ # ipykernel
+ # ipyparallel
+ # jupyter-server
+ # nbclassic
+ # nbclient
+ # notebook
+ # qtconsole
+jupyter-core==5.3.1
+ # via
+ # ipykernel
+ # jupyter-client
+ # jupyter-server
+ # jupyterlab
+ # nbclassic
+ # nbclient
+ # nbconvert
+ # nbformat
+ # notebook
+ # qtconsole
+jupyter-events==0.7.0
+ # via jupyter-server-fileid
+jupyter-server==1.24.0
+ # via
+ # jupyter-server-fileid
+ # jupyterlab
+ # jupyterlab-h5web
+ # jupyterlab-server
+ # nbclassic
+ # notebook-shim
+jupyter-server-fileid==0.9.0
+ # via jupyter-server-ydoc
+jupyter-server-ydoc==0.8.0
+ # via jupyterlab
+jupyter-ydoc==0.2.5
+ # via
+ # jupyter-server-ydoc
+ # jupyterlab
+jupyterlab==3.6.5
+ # via -r requirements.in
+jupyterlab-h5web[full]==8.0.0
+ # via -r requirements.in
+jupyterlab-pygments==0.2.2
+ # via nbconvert
+jupyterlab-server==2.24.0
+ # via jupyterlab
+jupyterlab-widgets==1.1.5
+ # via ipywidgets
+kikuchipy==0.8.7
+ # via pynxtools
+kiwisolver==1.4.4
+ # via matplotlib
+lark==1.1.7
+ # via pynxtools
+lazy-loader==0.3
+ # via scikit-image
+llvmlite==0.38.1
+ # via numba
+lmfit==1.2.2
+ # via
+ # arpes
+ # mpes
+ # nexpy
+ # pyxem
+ # sed
+locket==1.0.0
+ # via
+ # distributed
+ # partd
+lxml==4.9.3
+ # via
+ # punx
+ # pyresttable
+mako==1.2.4
+ # via silx
+markupsafe==2.1.3
+ # via
+ # jinja2
+ # mako
+ # nbconvert
+matplotlib==3.7.2
+ # via
+ # arpes
+ # ase
+ # diffsims
+ # hyperspy
+ # ipympl
+ # kikuchipy
+ # matplotlib-scalebar
+ # mpes
+ # mplcursors
+ # nexpy
+ # orix
+ # pyfai
+ # pyxem
+ # radioactivedecay
+ # sed
+ # silx
+ # symmetrize
+matplotlib-inline==0.1.6
+ # via
+ # ipykernel
+ # ipython
+matplotlib-scalebar==0.8.1
+ # via orix
+mistune==3.0.1
+ # via nbconvert
+mpes==1.1.4
+ # via -r requirements.in
+mplcursors==0.5.2
+ # via nexpy
+mpmath==1.3.0
+ # via sympy
+msgpack==1.0.5
+ # via
+ # blosc2
+ # distributed
+natsort==8.4.0
+ # via
+ # hyperspy
+ # mpes
+ # sed
+nbclassic==1.0.0
+ # via
+ # jupyterlab
+ # notebook
+nbclient==0.8.0
+ # via nbconvert
+nbconvert==7.7.3
+ # via
+ # jupyter-server
+ # nbclassic
+ # notebook
+nbformat==5.9.2
+ # via
+ # jupyter-server
+ # nbclassic
+ # nbclient
+ # nbconvert
+ # notebook
+nest-asyncio==1.5.7
+ # via
+ # ipykernel
+ # jupyter-client
+ # nbclassic
+ # notebook
+netcdf4==1.6.4
+ # via arpes
+networkx==3.1
+ # via
+ # radioactivedecay
+ # scikit-image
+nexpy==1.0.4
+ # via -r requirements.in
+nexusformat==1.0.2
+ # via nexpy
+niondata==0.15.3
+ # via
+ # nionswift
+ # nionswift-io
+nionswift==0.16.8
+ # via pynxtools
+nionswift-io==0.15.1
+ # via nionswift
+nionui==0.6.10
+ # via nionswift
+nionutils==0.4.6
+ # via
+ # niondata
+ # nionswift
+ # nionswift-io
+ # nionui
+nodejs==0.1.1
+ # via -r requirements.in
+nose==1.3.7
+ # via mpes
+notebook==6.5.5
+ # via
+ # jupyterlab
+ # widgetsnbextension
+notebook-shim==0.2.3
+ # via nbclassic
+numba==0.55.2
+ # via
+ # arpes
+ # diffsims
+ # hyperspy
+ # kikuchipy
+ # mpes
+ # orix
+ # pyxem
+ # sed
+ # sparse
+numcodecs==0.11.0
+ # via zarr
+numexpr==2.8.5
+ # via
+ # hyperspy
+ # pyfai
+ # tables
+numpy==1.21.6
+ # via
+ # -r requirements.in
+ # arpes
+ # ase
+ # astropy
+ # bokeh
+ # cftime
+ # contourpy
+ # dask
+ # deepdish
+ # diffsims
+ # fabio
+ # fastdtw
+ # fastparquet
+ # h5grove
+ # h5py
+ # hyperspy
+ # ifes-apt-tc-data-modeling
+ # imageio
+ # ipympl
+ # kikuchipy
+ # lmfit
+ # matplotlib
+ # mpes
+ # netcdf4
+ # nexpy
+ # nexusformat
+ # niondata
+ # nionswift
+ # nionswift-io
+ # nionui
+ # numba
+ # numcodecs
+ # numexpr
+ # numpy-quaternion
+ # opencv-python
+ # orix
+ # pandas
+ # photutils
+ # punx
+ # pyerfa
+ # pyfai
+ # pynxtools
+ # pyopencl
+ # pyqtgraph
+ # pyresttable
+ # pywavelets
+ # pyxem
+ # radioactivedecay
+ # scikit-image
+ # scikit-learn
+ # scipy
+ # sed
+ # silx
+ # sparse
+ # symmetrize
+ # tables
+ # tifffile
+ # xarray
+ # zarr
+numpy-quaternion==2022.4.3
+ # via orix
+opencv-python==4.8.0.74
+ # via
+ # mpes
+ # symmetrize
+optional-django==0.1.0
+ # via nodejs
+orix==0.11.1
+ # via
+ # diffsims
+ # kikuchipy
+ # pyxem
+orjson==3.9.3
+ # via h5grove
+packaging==23.1
+ # via
+ # arpes
+ # astropy
+ # bokeh
+ # dask
+ # distributed
+ # fastparquet
+ # hyperspy
+ # ipykernel
+ # jupyter-server
+ # jupyterlab
+ # jupyterlab-server
+ # matplotlib
+ # nbconvert
+ # pooch
+ # qtconsole
+ # qtpy
+ # scikit-image
+ # sphinx
+ # tables
+pandas==1.5.3
+ # via
+ # arpes
+ # dask
+ # fastparquet
+ # ifes-apt-tc-data-modeling
+ # mpes
+ # pynxtools
+ # sed
+ # xarray
+pandocfilters==1.5.0
+ # via nbconvert
+param==1.13.0
+ # via pyct
+parso==0.8.3
+ # via jedi
+partd==1.4.0
+ # via dask
+pexpect==4.8.0
+ # via ipython
+photutils==1.8.0
+ # via
+ # mpes
+ # symmetrize
+pickleshare==0.7.5
+ # via ipython
+pillow==10.0.0
+ # via
+ # bokeh
+ # imageio
+ # ipympl
+ # matplotlib
+ # nexpy
+ # nionswift
+ # scikit-image
+ # silx
+pint==0.21.1
+ # via
+ # arpes
+ # hyperspy
+pkgutil-resolve-name==1.3.10
+ # via jsonschema
+platformdirs==3.10.0
+ # via
+ # jupyter-core
+ # pooch
+ # pyopencl
+ # pytools
+ # requests-cache
+pooch==1.7.0
+ # via
+ # kikuchipy
+ # orix
+prettytable==3.8.0
+ # via hyperspy
+prometheus-client==0.17.1
+ # via
+ # jupyter-server
+ # nbclassic
+ # notebook
+prompt-toolkit==3.0.39
+ # via ipython
+psutil==5.9.5
+ # via
+ # diffsims
+ # distributed
+ # ipykernel
+ # ipyparallel
+ # pyxem
+ # sed
+ptyprocess==0.7.0
+ # via
+ # pexpect
+ # terminado
+punx==0.3.0
+ # via -r requirements.in
+pure-eval==0.2.2
+ # via stack-data
+py-cpuinfo==9.0.0
+ # via tables
+pycifrw==4.4.5
+ # via diffpy-structure
+pycparser==2.21
+ # via cffi
+pyct==0.5.0
+ # via colorcet
+pyerfa==2.0.0.3
+ # via astropy
+pyfai==2023.5.0
+ # via pyxem
+pygments==2.16.1
+ # via
+ # ipython
+ # nbconvert
+ # qtconsole
+ # sphinx
+pylatexenc==2.10
+ # via nexpy
+pynxtools==0.0.5
+ # via
+ # -r requirements.in
+ # sed
+pyopencl==2023.1.1
+ # via silx
+pyopengl==3.1.7
+ # via silx
+pyparsing==3.0.9
+ # via matplotlib
+pyqt5==5.15.0
+ # via
+ # arpes
+ # silx
+pyqt5-sip==12.12.2
+ # via pyqt5
+pyqtgraph==0.12.4
+ # via arpes
+pyresttable==2020.0.8
+ # via punx
+python-dateutil==2.8.2
+ # via
+ # arrow
+ # hyperspy
+ # ipyparallel
+ # jupyter-client
+ # matplotlib
+ # pandas
+ # silx
+python-json-logger==2.0.7
+ # via jupyter-events
+pytools==2023.1.1
+ # via pyopencl
+pytz==2023.3
+ # via
+ # babel
+ # nionswift
+ # pandas
+ # pynxtools
+pytz-deprecation-shim==0.1.0.post0
+ # via tzlocal
+pywavelets==1.4.1
+ # via scikit-image
+pyxem==0.15.1
+ # via pynxtools
+pyyaml==6.0.1
+ # via
+ # astropy
+ # bokeh
+ # dask
+ # distributed
+ # hyperspy
+ # jupyter-events
+ # kikuchipy
+ # pynxtools
+ # sed
+pyzmq==24.0.1
+ # via
+ # ipykernel
+ # ipyparallel
+ # jupyter-client
+ # jupyter-server
+ # nbclassic
+ # notebook
+ # qtconsole
+qtconsole==5.4.3
+ # via
+ # nexpy
+ # silx
+qtpy==2.3.1
+ # via
+ # nexpy
+ # qtconsole
+radioactivedecay==0.4.19
+ # via ifes-apt-tc-data-modeling
+recommonmark==0.7.1
+ # via symmetrize
+referencing==0.30.2
+ # via
+ # jsonschema
+ # jsonschema-specifications
+ # jupyter-events
+requests==2.31.0
+ # via
+ # hyperspy
+ # jupyterlab-server
+ # pooch
+ # punx
+ # pynxtools
+ # requests-cache
+ # sphinx
+requests-cache==1.1.0
+ # via pynxtools
+rfc3339-validator==0.1.4
+ # via
+ # jsonschema
+ # jupyter-events
+rfc3986-validator==0.1.1
+ # via
+ # jsonschema
+ # jupyter-events
+rpds-py==0.9.2
+ # via
+ # jsonschema
+ # referencing
+rx==3.2.0
+ # via arpes
+scikit-image==0.21.0
+ # via
+ # hyperspy
+ # kikuchipy
+ # mpes
+ # pyxem
+ # symmetrize
+scikit-learn==1.3.0
+ # via
+ # arpes
+ # kikuchipy
+ # pyxem
+scipy==1.8.1
+ # via
+ # arpes
+ # ase
+ # deepdish
+ # diffsims
+ # hyperspy
+ # kikuchipy
+ # lmfit
+ # mpes
+ # nexpy
+ # nexusformat
+ # niondata
+ # nionswift
+ # orix
+ # pyfai
+ # pynxtools
+ # pyxem
+ # radioactivedecay
+ # scikit-image
+ # scikit-learn
+ # sed
+ # silx
+ # sparse
+ # symmetrize
+sed @ git+https://github.com/OpenCOMPES/sed.git@87e793e
+ # via -r requirements.in
+send2trash==1.8.2
+ # via
+ # jupyter-server
+ # nbclassic
+ # notebook
+silx[full]==1.1.2
+ # via
+ # -r requirements.in
+ # mpes
+ # pyfai
+six==1.16.0
+ # via
+ # asttokens
+ # bleach
+ # diffpy-structure
+ # python-dateutil
+ # rfc3339-validator
+ # url-normalize
+smmap==5.0.0
+ # via gitdb
+sniffio==1.3.0
+ # via anyio
+snowballstemmer==2.2.0
+ # via sphinx
+sortedcontainers==2.4.0
+ # via distributed
+soupsieve==2.4.1
+ # via beautifulsoup4
+sparse==0.14.0
+ # via hyperspy
+sphinx==6.2.1
+ # via
+ # mpes
+ # recommonmark
+ # sphinx-rtd-theme
+ # sphinxcontrib-jquery
+ # symmetrize
+sphinx-rtd-theme==1.2.2
+ # via symmetrize
+sphinxcontrib-applehelp==1.0.4
+ # via sphinx
+sphinxcontrib-devhelp==1.0.2
+ # via sphinx
+sphinxcontrib-htmlhelp==2.0.1
+ # via sphinx
+sphinxcontrib-jquery==4.1
+ # via sphinx-rtd-theme
+sphinxcontrib-jsmath==1.0.1
+ # via sphinx
+sphinxcontrib-qthelp==1.0.3
+ # via sphinx
+sphinxcontrib-serializinghtml==1.1.5
+ # via sphinx
+stack-data==0.6.2
+ # via ipython
+symmetrize==0.5.5
+ # via
+ # mpes
+ # sed
+sympy==1.12
+ # via
+ # hyperspy
+ # radioactivedecay
+tables==3.8.0
+ # via deepdish
+tblib==2.0.0
+ # via distributed
+terminado==0.17.1
+ # via
+ # jupyter-server
+ # nbclassic
+ # notebook
+threadpoolctl==3.2.0
+ # via
+ # mpes
+ # scikit-learn
+ # sed
+tifffile==2022.10.10
+ # via
+ # h5grove
+ # hyperspy
+ # scikit-image
+ # sed
+tinycss2==1.2.1
+ # via nbconvert
+titlecase==2.4
+ # via arpes
+tomli==2.0.1
+ # via jupyterlab
+toolz==0.12.0
+ # via
+ # dask
+ # distributed
+ # hyperspy
+ # partd
+tornado==6.3.2
+ # via
+ # bokeh
+ # distributed
+ # ipykernel
+ # ipyparallel
+ # jupyter-client
+ # jupyter-server
+ # jupyterlab
+ # nbclassic
+ # notebook
+ # terminado
+tqdm==4.65.0
+ # via
+ # arpes
+ # diffsims
+ # hyperspy
+ # ipyparallel
+ # kikuchipy
+ # mpes
+ # orix
+ # sed
+traitlets==5.9.0
+ # via
+ # comm
+ # ipykernel
+ # ipympl
+ # ipyparallel
+ # ipython
+ # ipywidgets
+ # jupyter-client
+ # jupyter-core
+ # jupyter-events
+ # jupyter-server
+ # matplotlib-inline
+ # nbclassic
+ # nbclient
+ # nbconvert
+ # nbformat
+ # notebook
+ # qtconsole
+traits==6.4.1
+ # via hyperspy
+transforms3d==0.4.1
+ # via
+ # diffsims
+ # pyxem
+typing-extensions==4.7.1
+ # via
+ # bokeh
+ # cattrs
+ # ipython
+ # pytools
+tzdata==2023.3
+ # via pytz-deprecation-shim
+tzlocal==4.3
+ # via
+ # nionswift
+ # pynxtools
+uncertainties==3.1.7
+ # via lmfit
+uri-template==1.3.0
+ # via jsonschema
+url-normalize==1.4.3
+ # via requests-cache
+urllib3==2.0.4
+ # via
+ # distributed
+ # requests
+ # requests-cache
+wcwidth==0.2.6
+ # via
+ # prettytable
+ # prompt-toolkit
+webcolors==1.13
+ # via jsonschema
+webencodings==0.5.1
+ # via
+ # bleach
+ # tinycss2
+websocket-client==1.6.1
+ # via jupyter-server
+widgetsnbextension==3.6.5
+ # via ipywidgets
+xarray==0.20.2
+ # via
+ # arpes
+ # mpes
+ # pynxtools
+ # sed
+y-py==0.6.0
+ # via
+ # jupyter-ydoc
+ # ypy-websocket
+ypy-websocket==0.8.4
+ # via jupyter-server-ydoc
+zarr==2.16.0
+ # via hyperspy
+zict==3.0.0
+ # via distributed
+zipfile37==0.1.3
+ # via pynxtools
+zipp==3.16.2
+ # via
+ # importlib-metadata
+ # importlib-resources
+
+# The following packages are considered to be unsafe in a requirements file:
+# pip
+# setuptools