From 9870ee104ccf30e0835890fe526a0d20e8e58639 Mon Sep 17 00:00:00 2001
From: domna <florian.dobener@physik.hu-berlin.de>
Date: Thu, 1 Jun 2023 18:16:27 +0200
Subject: [PATCH] Updates pynxtools to v0.0.3
---
docker/ellips/requirements.in | 2 +-
docker/ellips/requirements.txt | 100 +++++++++++++++++++++++----------
2 files changed, 72 insertions(+), 30 deletions(-)
diff --git a/docker/ellips/requirements.in b/docker/ellips/requirements.in
index be96c19..c0b7580 100644
--- a/docker/ellips/requirements.in
+++ b/docker/ellips/requirements.in
@@ -1,4 +1,4 @@
-pynxtools>=0.0.2
+pynxtools>=0.0.3
ipywidgets<8.0.0,>=7.0.1
nodejs
h5glance>=0.8
diff --git a/docker/ellips/requirements.txt b/docker/ellips/requirements.txt
index b4358e2..55b3411 100644
--- a/docker/ellips/requirements.txt
+++ b/docker/ellips/requirements.txt
@@ -4,7 +4,7 @@
#
# pip-compile --output-file=requirements.txt --resolver=backtracking
#
-anyio==3.6.2
+anyio==3.7.0
# via jupyter-server
argon2-cffi==21.3.0
# via
@@ -34,7 +34,7 @@ beautifulsoup4==4.12.2
# via nbconvert
bleach==6.0.0
# via nbconvert
-cattrs==22.2.0
+cattrs==23.1.1
# via requests-cache
certifi==2023.5.7
# via requests
@@ -54,7 +54,7 @@ contourpy==1.0.7
# via matplotlib
cycler==0.11.0
# via matplotlib
-dask[array]==2023.4.1
+dask[array]==2023.5.1
# via
# hyperspy
# kikuchipy
@@ -73,7 +73,7 @@ diffpy-structure==3.1.0
# diffsims
# kikuchipy
# orix
-diffsims==0.5.1
+diffsims==0.5.2
# via
# kikuchipy
# pyxem
@@ -82,18 +82,20 @@ dill==0.3.6
entrypoints==0.4
# via ipyparallel
exceptiongroup==1.1.1
- # via cattrs
+ # via
+ # anyio
+ # cattrs
executing==1.2.0
# via stack-data
fabio==2023.4.1
# via
# pyfai
# silx
-fastjsonschema==2.16.3
+fastjsonschema==2.17.1
# via nbformat
flatdict==4.0.1
# via pynxtools
-fonttools==4.39.3
+fonttools==4.39.4
# via matplotlib
fsspec==2023.5.0
# via
@@ -120,13 +122,14 @@ h5py==3.8.0
# ifes-apt-tc-data-modeling
# jupyterlab-h5web
# kikuchipy
+ # nionswift
# orix
# punx
# pyelli
# pyfai
# pynxtools
# silx
-hdf5plugin==4.1.1
+hdf5plugin==4.1.2
# via jupyterlab-h5web
htmlgen==2.0.0
# via h5glance
@@ -145,6 +148,9 @@ imageio==2.27.0
# via
# hyperspy
# kikuchipy
+ # nionswift
+ # nionswift-io
+ # nionui
# scikit-image
importlib-metadata==6.6.0
# via
@@ -152,7 +158,7 @@ importlib-metadata==6.6.0
# hyperspy
importlib-resources==5.12.0
# via pyelli
-ipykernel==6.23.0
+ipykernel==6.23.1
# via
# ipyparallel
# ipywidgets
@@ -192,7 +198,7 @@ jinja2==3.1.2
# notebook
joblib==1.2.0
# via scikit-learn
-json5==0.9.11
+json5==0.9.14
# via jupyterlab-server
jsonschema==4.17.3
# via
@@ -229,7 +235,7 @@ jupyterlab==3.5.3
# -r requirements.in
# ifes-apt-tc-data-modeling
# pynxtools
-jupyterlab-h5web[full]==7.1.1
+jupyterlab-h5web[full]==8.0.0
# via
# -r requirements.in
# ifes-apt-tc-data-modeling
@@ -240,7 +246,7 @@ jupyterlab-server==2.22.1
# via jupyterlab
jupyterlab-widgets==1.1.4
# via ipywidgets
-kikuchipy==0.8.4
+kikuchipy==0.8.6
# via pynxtools
kiwisolver==1.4.4
# via matplotlib
@@ -294,14 +300,14 @@ nbclassic==1.0.0
# via
# jupyterlab
# notebook
-nbclient==0.7.4
+nbclient==0.8.0
# via nbconvert
nbconvert==7.4.0
# via
# jupyter-server
# nbclassic
# notebook
-nbformat==5.8.0
+nbformat==5.9.0
# via
# jupyter-server
# nbclassic
@@ -317,6 +323,22 @@ networkx==3.1
# via
# radioactivedecay
# scikit-image
+niondata==0.15.3
+ # via
+ # nionswift
+ # nionswift-io
+nionswift==0.16.8
+ # via pynxtools
+nionswift-io==0.15.1
+ # via nionswift
+nionui==0.6.10
+ # via nionswift
+nionutils==0.4.6
+ # via
+ # niondata
+ # nionswift
+ # nionswift-io
+ # nionui
nodejs==0.1.1
# via -r requirements.in
notebook==6.5.4
@@ -352,6 +374,10 @@ numpy==1.24.3
# kikuchipy
# lmfit
# matplotlib
+ # niondata
+ # nionswift
+ # nionswift-io
+ # nionui
# numba
# numexpr
# numpy-quaternion
@@ -381,7 +407,7 @@ orix==0.11.1
# diffsims
# kikuchipy
# pyxem
-orjson==3.8.12
+orjson==3.9.0
# via h5grove
packaging==23.1
# via
@@ -397,7 +423,7 @@ packaging==23.1
# pooch
# scikit-image
# xarray
-pandas==2.0.1
+pandas==2.0.2
# via
# ifes-apt-tc-data-modeling
# pyelli
@@ -417,12 +443,13 @@ pillow==9.5.0
# via
# imageio
# matplotlib
+ # nionswift
# scikit-image
-pint==0.21
+pint==0.22
# via
# hyperspy
# pyelli
-platformdirs==3.5.0
+platformdirs==3.5.1
# via
# jupyter-core
# pooch
@@ -437,7 +464,7 @@ pooch==1.7.0
# orix
prettytable==3.7.0
# via hyperspy
-prometheus-client==0.16.0
+prometheus-client==0.17.0
# via
# jupyter-server
# nbclassic
@@ -464,13 +491,13 @@ pycparser==2.21
# via cffi
pyelli[fitting]==0.16.0
# via -r requirements.in
-pyfai==2023.3.0
+pyfai==2023.5.0
# via pyxem
pygments==2.15.1
# via
# ipython
# nbconvert
-pynxtools==0.0.2
+pynxtools==0.0.3
# via -r requirements.in
pyparsing==3.0.9
# via matplotlib
@@ -487,11 +514,14 @@ python-dateutil==2.8.2
# pandas
pytz==2023.3
# via
+ # nionswift
# pandas
# pynxtools
+pytz-deprecation-shim==0.1.0.post0
+ # via tzlocal
pywavelets==1.4.1
# via scikit-image
-pyxem==0.15.0
+pyxem==0.15.1
# via pynxtools
pyyaml==6.0
# via
@@ -500,7 +530,7 @@ pyyaml==6.0
# kikuchipy
# pyelli
# pynxtools
-pyzmq==25.0.2
+pyzmq==25.1.0
# via
# ipykernel
# ipyparallel
@@ -512,7 +542,7 @@ radioactivedecay==0.4.17
# via ifes-apt-tc-data-modeling
rapidfuzz==3.0.0
# via pyelli
-requests==2.30.0
+requests==2.31.0
# via
# hyperspy
# jupyterlab-server
@@ -538,6 +568,8 @@ scipy==1.10.1
# hyperspy
# kikuchipy
# lmfit
+ # niondata
+ # nionswift
# orix
# pyelli
# pyfai
@@ -571,7 +603,7 @@ sparse==0.14.0
# via hyperspy
stack-data==0.6.2
# via ipython
-sympy==1.11.1
+sympy==1.12
# via
# hyperspy
# radioactivedecay
@@ -598,7 +630,7 @@ toolz==0.12.0
# dask
# hyperspy
# partd
-tornado==6.3.1
+tornado==6.3.2
# via
# ipykernel
# ipyparallel
@@ -637,8 +669,18 @@ transforms3d==0.4.1
# via
# diffsims
# pyxem
+typing-extensions==4.6.2
+ # via
+ # cattrs
+ # pint
tzdata==2023.3
- # via pandas
+ # via
+ # pandas
+ # pytz-deprecation-shim
+tzlocal==4.3
+ # via
+ # nionswift
+ # pynxtools
uncertainties==3.1.7
# via lmfit
url-normalize==1.4.3
@@ -655,11 +697,11 @@ webencodings==0.5.1
# via
# bleach
# tinycss2
-websocket-client==1.5.1
+websocket-client==1.5.2
# via jupyter-server
widgetsnbextension==3.6.4
# via ipywidgets
-xarray==2023.4.2
+xarray==2023.5.0
# via pynxtools
zipfile37==0.1.3
# via pynxtools
--
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