{ "type": "nomad_meta_info_1_0", "description": "meta info used by the AMBER parser, all names are expected to start with x_amber_", "dependencies": [ { "relativePath": "common.nomadmetainfo.json" }, { "relativePath": "meta_types.nomadmetainfo.json" }], "metaInfos": [ { "description": "PBC image flag index.", "dtypeStr": "i", "name": "x_amber_atom_positions_image_index", "shape": [ "number_of_atoms", 3 ], "units": " ", "superNames": [ "section_system" ] }, { "description": "Position of the atoms in a scaled format [0, 1].", "dtypeStr": "f", "name": "x_amber_atom_positions_scaled", "shape": [ "number_of_atoms", 3 ], "units": " ", "superNames": [ "section_system" ] }, { "description": "Position of the atoms wrapped back to the periodic box.", "dtypeStr": "f", "name": "x_amber_atom_positions_wrapped", "shape": [ "number_of_atoms", 3 ], "units": "m", "superNames": [ "section_system" ] }, { "description": "MD barostat target pressure.", "dtypeStr": "f", "name": "x_amber_barostat_target_pressure", "shape": [], "units": "Pa", "superNames": [ "settings_barostat" ] }, { "description": "MD barostat relaxation time.", "dtypeStr": "f", "name": "x_amber_barostat_tau", "shape": [], "units": "s", "superNames": [ "settings_barostat" ] }, { "description": "MD barostat type, valid values are defined in the barostat_type wiki page.", "dtypeStr": "C", "name": "x_amber_barostat_type", "shape": [], "superNames": [ "settings_barostat" ] }, { "description": "MD integration time step.", "dtypeStr": "f", "name": "x_amber_integrator_dt", "shape": [], "units": "s", "superNames": [ "settings_integrator" ] }, { "description": "MD integrator type, valid values are defined in the integrator_type wiki page.", "dtypeStr": "C", "name": "x_amber_integrator_type", "shape": [], "superNames": [ "settings_integrator" ] }, { "description": "Periodic boundary condition type in the sampling (non-PBC or PBC).", "dtypeStr": "C", "name": "x_amber_periodicity_type", "shape": [], "superNames": [ "settings_integrator" ] }, { "description": "Element symbol of an atom type.", "dtypeStr": "C", "name": "x_amber_atom_type_element", "shape": [], "superNames": [ "section_atom_type" ] }, { "description": "van der Waals radius of an atom type.", "dtypeStr": "f", "name": "x_amber_atom_type_radius", "shape": [], "superNames": [ "section_atom_type" ] }, { "description": "Reference to the atom type of each interaction atoms.", "dtypeStr": "r", "name": "x_amber_interaction_atom_to_atom_type_ref", "referencedSections": [ "section_atom_type" ], "shape": ["number_of_atoms_per_interaction"], "superNames": [ "section_interaction" ] }, { "description": "Langevin thermostat damping factor.", "dtypeStr": "f", "name": "x_amber_langevin_gamma", "shape": [], "units": "s", "superNames": [ "settings_thermostat" ] }, { "description": "Reference to the atom type of each molecule interaction atoms.", "dtypeStr": "r", "name": "x_amber_molecule_interaction_atom_to_atom_type_ref", "referencedSections": [ "section_atom_type" ], "shape": ["number_of_atoms_per_interaction"], "superNames": [ "section_molecule_interaction" ] }, { "description": "Number of defined pair interactions within a molecule (L-J pairs).", "dtypeStr": "i", "name": "x_amber_number_of_defined_molecule_pair_interactions", "shape": [], "superNames": [ "section_molecule_interaction" ] }, { "description": "Number of defined pair interactions (L-J pairs).", "dtypeStr": "i", "name": "x_amber_number_of_defined_pair_interactions", "shape": [], "superNames": [ "section_interaction" ] }, { "description": "Number of requested MD integration time steps.", "dtypeStr": "f", "name": "x_amber_number_of_steps_requested", "shape": [], "superNames": [ "settings_integrator" ] }, { "description": "Reference to the atom type for pair interactions.", "dtypeStr": "r", "name": "x_amber_pair_interaction_atom_type_ref", "referencedSections": [ "section_atom_type" ], "shape": [ "x_amber_number_of_defined_pair_interactions", "number_of_atoms_per_interaction" ], "superNames": [ "section_interaction" ] }, { "description": "Pair interactions parameters.", "dtypeStr": "f", "name": "x_amber_pair_interaction_parameters", "shape": [ "x_amber_number_of_defined_pair_interactions", 2 ], "superNames": [ "section_interaction" ] }, { "description": "Molecule pair interactions parameters.", "dtypeStr": "f", "name": "x_amber_pair_molecule_interaction_parameters", "shape": [ "number_of_defined_molecule_pair_interactions", 2 ], "superNames": [ "section_molecule_interaction" ] }, { "description": "Reference to the atom type for pair interactions within a molecule.", "dtypeStr": "r", "name": "x_amber_pair_molecule_interaction_to_atom_type_ref", "referencedSections": [ "section_atom_type" ], "shape": [ "x_amber_number_of_defined_pair_interactions", "number_of_atoms_per_interaction" ], "superNames": [ "section_molecule_interaction" ] }, { "description": "MD thermostat level (see wiki: single, multiple, regional).", "dtypeStr": "C", "name": "x_amber_thermostat_level", "shape": [], "superNames": [ "settings_thermostat" ] }, { "description": "MD thermostat target temperature.", "dtypeStr": "f", "name": "x_amber_thermostat_target_temperature", "shape": [], "units": "K", "superNames": [ "settings_thermostat" ] }, { "description": "MD thermostat relaxation time.", "dtypeStr": "f", "name": "x_amber_thermostat_tau", "shape": [], "units": "s", "superNames": [ "settings_thermostat" ] }, { "description": "MD thermostat type, valid values are defined in the thermostat_type wiki page.", "dtypeStr": "C", "name": "x_amber_thermostat_type", "shape": [], "superNames": [ "settings_thermostat" ] }, { "description": "Program version date.", "dtypeStr": "C", "name": "x_amber_program_version_date", "shape": [], "superNames": [ "section_run" ] }, { "description":"test", "name": "x_amber_xlo_xhi", "superNames": [ "section_run" ], "dtypeStr": "C", "shape": [] }, { "description":"Filename of data file", "name": "x_amber_data_file_store", "superNames": [ "section_run" ], "dtypeStr": "C", "shape": [] }, { "description":"dummy", "name": "x_amber_dummy", "superNames": [ "section_system", "section_run" ], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_section_input_output_files", "kindStr": "type_section", "description": "Temperory variable to store input and output file keywords", "repeats": false, "shape": [], "superNames": [ "section_run" ] }, { "description":"finline in mdin", "name": "x_amber_mdin_finline", "superNames": [ "section_system", "section_run" ], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_input_units_store", "description": "It determines the units of all quantities specified in the input script and data file, as well as quantities output to the screen, log file, and dump files.", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_data_bond_types_store", "description": "store temporarly", "superNames": ["section_topology"], "dtypeStr": "i", "shape": [] }, { "name": "x_amber_data_bond_count_store", "description": "store temporarly", "superNames": ["section_topology"], "dtypeStr": "i", "shape": [] }, { "name": "x_amber_data_angle_count_store", "description": "store temporarly", "superNames": ["section_topology"], "dtypeStr": "i", "shape": [] }, { "name": "x_amber_data_atom_types_store", "description": "store temporarly", "superNames": ["section_topology"], "dtypeStr": "i", "shape": [] }, { "name": "x_amber_data_dihedral_count_store", "description": "store temporarly", "superNames": ["section_topology"], "dtypeStr": "i", "shape": [] }, { "name": "x_amber_data_angles_store", "description": "store temporarly", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_data_angle_list_store", "description": "tmp", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_data_bond_list_store", "description": "tmp", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_data_dihedral_list_store", "description": "tmp", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_data_dihedral_coeff_list_store", "description": "tmp", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_masses_store", "description": "tmp", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_data_topo_list_store", "description": "tmp", "superNames": ["section_topology"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_traj_timestep_store", "description": "tmp", "superNames": ["section_system"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_traj_number_of_atoms_store", "description": "tmp", "superNames": ["section_system"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_traj_box_bound_store", "description": "tmp", "superNames": ["section_system"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_traj_box_bounds_store", "description": "tmp", "superNames": ["section_system"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_traj_variables_store", "description": "tmp", "superNames": ["section_system"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_traj_atoms_store", "description": "tmp", "superNames": ["section_system"], "dtypeStr": "C", "shape": [] }, { "name": "x_amber_program_working_path", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_program_execution_host", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_program_execution_path", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_program_module", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_program_execution_date", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_program_execution_time", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_mdin_header", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "name": "x_amber_mdin_wt", "description": "tmp", "dtypeStr": "C", "shape": [], "superNames": [ "section_run" ] }, { "description": "Parameters of mdin belonging to section method.", "kindStr": "type_abstract_document_content", "name": "x_amber_mdin_method", "superNames": [ "section_run" ] }, { "description": "section for gathering values for MD steps", "kindStr": "type_section", "name": "x_amber_section_single_configuration_calculation", "repeats": true, "superNames": [ "section_single_configuration_calculation" ] }, { "description": "Parameters of mdout belonging to section_single_configuration_calculation.", "kindStr": "type_abstract_document_content", "name": "x_amber_mdout_single_configuration_calculation", "superNames": [ "x_amber_section_single_configuration_calculation" ] }, { "description": "Parameters of mdin belonging to section method.", "kindStr": "type_abstract_document_content", "name": "x_amber_mdout_method", "superNames": [ "section_run" ] }, { "description": "Parameters of mdin belonging to settings run.", "kindStr": "type_abstract_document_content", "name": "x_amber_mdout_run", "superNames": [ "settings_run" ] }, { "description": "Parameters of mdin belonging to settings run.", "kindStr": "type_abstract_document_content", "name": "x_amber_mdin_run", "superNames": [ "settings_run" ] } ] }