nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2023-12-20T10:44:27Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1112Draft: Resolve "Running nomad-oasis on the root path"2023-12-20T10:44:27ZAdam FeketeDraft: Resolve "Running nomad-oasis on the root path"Closes #1357Closes #1357https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1117Resolve "North/gui: Allow custom tools.json for deployments"2023-05-16T13:56:20ZAdam FeketeResolve "North/gui: Allow custom tools.json for deployments"The goal is to completely remove the dependency on the `northTools.json` artifact from the GUI and use the new NORTH API instead.
Closes #1360
(GitHub) Closes #44The goal is to completely remove the dependency on the `northTools.json` artifact from the GUI and use the new NORTH API instead.
Closes #1360
(GitHub) Closes #44Adam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1119Resolve "Test JMESPath to fetch data in the GUI"2023-12-21T08:50:44ZAlvin Noe LadinesResolve "Test JMESPath to fetch data in the GUI"Closes #1325Closes #1325Alvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1124Draft: Refactor nomad config management by using pydantic models2023-12-20T10:59:53ZAdam FeketeDraft: Refactor nomad config management by using pydantic modelsCloses #1353
- [x] using pydantic model `BaseSettings`
- [x] make sure that the dictionaries will be merged and all other type will be overwritten
- [x] ~~make sure that config is a singleton object~~
- [x] make sure that we are loadi...Closes #1353
- [x] using pydantic model `BaseSettings`
- [x] make sure that the dictionaries will be merged and all other type will be overwritten
- [x] ~~make sure that config is a singleton object~~
- [x] make sure that we are loading the settings in the right order :
- values from \_\_init\_\_
- env vars
- nomad.yaml (from NOMAD_CONFIG OR from cwd (OR from the project folder)?)
- all the default values
- [x] update docs about the usage of double underscore for env vars (`NOMAD__MONGO__HOST`)
- [x] update testsAdam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1161Draft: Resolve "Parser matching is too slow"2023-04-02T21:08:27ZTheodore ChangDraft: Resolve "Parser matching is too slow"Closes #1396Closes #1396https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1162Draft: Resolve "Parser matching is too slow"2023-04-02T21:08:31ZTheodore ChangDraft: Resolve "Parser matching is too slow"Closes #1396Closes #1396https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1166Draft: Resolve "Parser matching is too slow"2023-04-02T21:08:33ZTheodore ChangDraft: Resolve "Parser matching is too slow"Closes #1396Closes #1396Markus ScheidgenMarkus Scheidgenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1184Draft: MBE python schema2023-12-21T08:51:29ZAndrea AlbinoDraft: MBE python schemahttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1196GitHub PR: updated to the newest minor version of some of the docker images2023-12-22T08:26:36ZMarkus ScheidgenGitHub PR: updated to the newest minor version of some of the docker imagesOriginal pull request on GitHub: https://github.com/nomad-coe/nomad/pull/43Original pull request on GitHub: https://github.com/nomad-coe/nomad/pull/43https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1203Use process based implementation for file matching2023-08-10T19:39:48ZTheodore ChangUse process based implementation for file matchingCloses #1396Closes #1396Theodore ChangTheodore Changhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1205Draft: Resolve "Yaml schemas: data section not generated if I use a specific ...2023-04-21T09:49:40ZMohammad NakhaeeDraft: Resolve "Yaml schemas: data section not generated if I use a specific name for a section"Closes #1406Closes #1406Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1217Added cli command for creating .env file for local development, added the...2023-04-19T07:14:47ZLauri HimanenAdded cli command for creating .env file for local development, added the...Added cli command for creating .env file for local development, added the creation of that file in setup_dev_env.sh.
Closes #1426Added cli command for creating .env file for local development, added the creation of that file in setup_dev_env.sh.
Closes #1426Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1221Fix QE parser2023-04-17T15:37:31ZAlvin Noe LadinesFix QE parserCorrect calculation system_refCorrect calculation system_refAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1222Resolve "Tabular Parser: numbers in section names in row mode give processing...2023-04-20T08:29:36ZAmir GolparvarResolve "Tabular Parser: numbers in section names in row mode give processing errors"Closes #1417Closes #1417Amir GolparvarAmir Golparvarhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1224Updated docs and scripts.2023-04-22T07:54:17ZLauri HimanenUpdated docs and scripts.Closes #1433Closes #1433Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1235Draft: Update pytest version2023-04-24T00:23:30ZTheodore ChangDraft: Update pytest versionTheodore ChangTheodore Changhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1255Draft: Resolve "Refactor metainfo Packages and references"2024-03-16T20:43:32ZTheodore ChangDraft: Resolve "Refactor metainfo Packages and references"Closes #1205Closes #1205Theodore ChangTheodore Changhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1269Draft: Renaming nexusutils to pynxtools and updating of north examples2023-12-21T08:51:34ZFlorian DobenerDraft: Renaming nexusutils to pynxtools and updating of north examplesAdded missing refactoring of names related to the previously named tool nexusutils/nomad-parser-nexus which is now called pynxtools and hosted on FAIRmat-NFDIAdded missing refactoring of names related to the previously named tool nexusutils/nomad-parser-nexus which is now called pynxtools and hosted on FAIRmat-NFDIhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1270Draft: Resolve "Circular references in ELN lead to infinite processing"2023-08-16T09:18:40ZMohammad NakhaeeDraft: Resolve "Circular references in ELN lead to infinite processing"Closes #1381Closes #1381Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1271Draft: Updates north submodule2023-08-11T09:25:52ZFlorian DobenerDraft: Updates north submodule