nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2024-01-26T08:37:26Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1647Resolve "Problem with material overview card"2024-01-26T08:37:26ZLauri HimanenResolve "Problem with material overview card"Closes #1861Closes #1861Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1648Resolve "Add documetation about how units work in NOMAD"2024-01-26T06:18:29ZLauri HimanenResolve "Add documetation about how units work in NOMAD"Closes #1855Closes #1855Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1643Revert results quantities to using reference2024-01-25T12:07:21ZAlvin Noe LadinesRevert results quantities to using referencePart of fix to #1861Part of fix to #1861Alvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1645Fixed issue with default pagination and switching to _score when performing f...2024-01-25T08:54:18ZLauri HimanenFixed issue with default pagination and switching to _score when performing free-text queries.Closes #1865Closes #1865Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1641GitHub PR: remove ChatGPT text2024-01-25T08:24:04ZMarkus ScheidgenGitHub PR: remove ChatGPT textOriginal pull request on GitHub: https://github.com/nomad-coe/nomad/pull/94Original pull request on GitHub: https://github.com/nomad-coe/nomad/pull/94https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1639Resolve "Publish externally to cental nomad"2024-01-24T17:37:58ZTheodore ChangResolve "Publish externally to cental nomad"Closes #1856Closes #1856Theodore ChangTheodore Changhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1631Resolve "include and exclude the visible and the editable properties"2024-01-23T15:41:24ZMohammad NakhaeeResolve "include and exclude the visible and the editable properties"Closes #1852Closes #1852Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1634Fixed variable name in user defined quantities menu, removed unnecessary logg...2024-01-19T10:17:26ZLauri HimanenFixed variable name in user defined quantities menu, removed unnecessary logging.Closes #1847Closes #1847Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/16011547-add-support-for-h5md-files2024-01-17T15:11:47ZJoseph Rudzinski1547-add-support-for-h5md-filespartner changes to dev of h5md parser: https://github.com/nomad-coe/atomistic-parsers/pull/71
Closes #1547partner changes to dev of h5md parser: https://github.com/nomad-coe/atomistic-parsers/pull/71
Closes #1547Joseph RudzinskiJoseph Rudzinskihttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1636Resolve "Update MatID"2024-01-17T12:32:43ZLauri HimanenResolve "Update MatID"Closes #1816Closes #1816Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1388Integrate metrics to logtransfer2024-01-17T12:18:07ZDaniel LehmbergIntegrate metrics to logtransfer
Add a new class `Statistics` in `logtransfer.py` which is a thread process that regularly (currently daily) collects metrics/statistics and includes these into the logs from an Oasis such that they are eventually transferred to logstas...
Add a new class `Statistics` in `logtransfer.py` which is a thread process that regularly (currently daily) collects metrics/statistics and includes these into the logs from an Oasis such that they are eventually transferred to logstash on central.
The Statistics internally calls the info/ (FastAPI endpoint), collects the statistics and sends them to the logstash (proxy) server. It should be rather easy to include more statistics, e.g. queries to elastic search or mongodb).
* [x] Prefix for the statistics -- currently a "stats_" is prefixed to each entry -- would it be better to add an identifying field to the json?
* [x] Run only the Statistics service (i.e. without logstash proxy, and let this run on central -- this includes the central statistics in the same format to the ES index)
Closes #1705
Related: #886
(old issues #820 )https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1615Improved search bar2024-01-15T09:59:05ZLauri HimanenImproved search barCloses #1790, #1700Closes #1790, #1700Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1620sts and stm example update.2024-01-09T08:13:21ZRubel Mozumdersts and stm example update.- [x] Update example in nomad-remote-tools-hub
- [x] Modify the nomad scripts corresponding to the examples (STM and STS)
- [x] Mrege 158 in nomad-remote-tools-hub and update the hash of submodule remote-tool-hub in nomad.
PR: https:/...- [x] Update example in nomad-remote-tools-hub
- [x] Modify the nomad scripts corresponding to the examples (STM and STS)
- [x] Mrege 158 in nomad-remote-tools-hub and update the hash of submodule remote-tool-hub in nomad.
PR: https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-remote-tools-hub/-/merge_requests/158Florian DobenerFlorian Dobenerhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1567Some documentation extensions2024-01-05T11:05:07ZAndrea AlbinoSome documentation extensionsWe are dedicated today to a sprint to restructure the documentation and add some new elements.
Beside the documentation itself, there is already a todo list with more technical stuff to propose:
- [ ] implement a test to check if links ...We are dedicated today to a sprint to restructure the documentation and add some new elements.
Beside the documentation itself, there is already a todo list with more technical stuff to propose:
- [ ] implement a test to check if links are broken (if it doesn't exist yet). @sakl did you mention once such a test?
- [ ] make more visible links in text. @wojasadr you may take care of this part?Joseph RudzinskiJoseph Rudzinskihttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1619Fix quantum espresso parser2023-12-25T20:53:48ZAlvin Noe LadinesFix quantum espresso parserAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1618ci error on format failure2023-12-22T15:12:25ZAhmed Ilyasci error on format failureAhmed IlyasAhmed Ilyashttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1603Resolve "Optimade produces ES docs that are too large"2023-12-22T12:38:33ZMarkus ScheidgenResolve "Optimade produces ES docs that are too large"Closes #1828Closes #1828https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1617Resolve "Keep a clean gitlab project"2023-12-22T10:21:48ZMarkus ScheidgenResolve "Keep a clean gitlab project"https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1616Remove timers2023-12-21T20:19:18ZTheodore ChangRemove timersTheodore ChangTheodore Changhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1568docs: add documentation about ruff to plugin docs2023-12-21T14:02:57ZAhmed Ilyasdocs: add documentation about ruff to plugin docs