nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2023-01-16T10:58:18Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1034Draft: Resolve "refactoring eln base sections"2023-01-16T10:58:18ZHampus NaesstroemDraft: Resolve "refactoring eln base sections"Closed by error of duplicate branchClosed by error of duplicate branchHampus NaesstroemHampus Naesstroemhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1008Resolve "Adding reduce and descriptive formula to the GUI search"2023-01-23T09:59:06ZJose Marquez PrietoResolve "Adding reduce and descriptive formula to the GUI search"Closes #1255
Adds also a fix in the formula normalizer of the Perovskite Database to return the proper `chemical_formula_reduced`Closes #1255
Adds also a fix in the formula normalizer of the Perovskite Database to return the proper `chemical_formula_reduced`https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/940Draft: Resolve "Integrating Labfolder"2023-01-24T11:29:02ZAmir GolparvarDraft: Resolve "Integrating Labfolder"https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1054Allow to pass query for the post request entries/entryId/archive/query2023-01-25T13:23:29ZMohammad NakhaeeAllow to pass query for the post request entries/entryId/archive/queryCloses #1284Closes #1284Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1068Reintroduced menu items for program information, renamed xc_functional_type...2023-02-01T08:29:42ZLauri HimanenReintroduced menu items for program information, renamed xc_functional_type...Revert electronic parser submodule change.
Closes #1310Revert electronic parser submodule change.
Closes #1310https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1041Debug: version attribute takes string as it should be.2023-02-06T18:03:11ZRubel MozumderDebug: version attribute takes string as it should be.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1087Small UX changes to the upload interface.2023-02-13T09:27:36ZMarkus ScheidgenSmall UX changes to the upload interface.Improved the file upload vs create entry button presentation.
Added documentation and supported file format links to
upload overview and uploads page.
Changelog: ChangedImproved the file upload vs create entry button presentation.
Added documentation and supported file format links to
upload overview and uploads page.
Changelog: Changedhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/821Draft: Base section for crystal structure file parsing into the metainfo2023-02-15T10:02:00ZJose Marquez PrietoDraft: Base section for crystal structure file parsing into the metainfoA nomad User asked about how he could deposit crystal structure files from a structure generative ML model into nomad. Whilst the general discussion about how we are going to design a workflow for ML-generated data is gonna take some tim...A nomad User asked about how he could deposit crystal structure files from a structure generative ML model into nomad. Whilst the general discussion about how we are going to design a workflow for ML-generated data is gonna take some time, I have created a base class to parse structure files into the nomad metainfo. At the moment, it writes the `run.system` section, but I understand from the discussion in #1038 that the section run is reserved for DFT codes. Should it be ok to put a System section in `data` and the parse this to Results?
@mscheidg @himanel1, any advice on how would you approach this?
Thanks!Jose Marquez PrietoJose Marquez Prietohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/899Enlarge client_max_body_size for north2023-02-17T13:56:49ZFlorian DobenerEnlarge client_max_body_size for northFor some examples we get the error `413 Request entity too large` which is related to a client_max_body_size which is too small in the nginx reverse proxy (https://github.com/jupyterlab/jupyterlab/issues/4214).
This MR sets the client_m...For some examples we get the error `413 Request entity too large` which is related to a client_max_body_size which is too small in the nginx reverse proxy (https://github.com/jupyterlab/jupyterlab/issues/4214).
This MR sets the client_max_body_size to 500mb to resolve this issue for deployments.
I'm not sure if the config change for k8s is sufficient the way I made it, since I'm not very experienced with it.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1096Draft: Resolve "entry is disappearing after click the save button"2023-02-21T12:26:31ZMohammad NakhaeeDraft: Resolve "entry is disappearing after click the save button"Closes #1340Closes #1340Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1021Draft: Resolve "HTTP 500 on optimade query"2023-03-20T07:22:46ZMarkus ScheidgenDraft: Resolve "HTTP 500 on optimade query"Closes #1195Closes #1195https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1049Draft: Ikz mbe2023-03-23T08:15:36ZAndrea AlbinoDraft: Ikz mbeAndrea AlbinoAndrea Albinohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1084Update xps image and nexus file in example for NORTH.2023-03-28T14:38:30ZRubel MozumderUpdate xps image and nexus file in example for NORTH.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1161Draft: Resolve "Parser matching is too slow"2023-04-02T21:08:27ZTheodore ChangDraft: Resolve "Parser matching is too slow"Closes #1396Closes #1396https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1162Draft: Resolve "Parser matching is too slow"2023-04-02T21:08:31ZTheodore ChangDraft: Resolve "Parser matching is too slow"Closes #1396Closes #1396https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1166Draft: Resolve "Parser matching is too slow"2023-04-02T21:08:33ZTheodore ChangDraft: Resolve "Parser matching is too slow"Closes #1396Closes #1396Markus ScheidgenMarkus Scheidgenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1221Fix QE parser2023-04-17T15:37:31ZAlvin Noe LadinesFix QE parserCorrect calculation system_refCorrect calculation system_refAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1217Added cli command for creating .env file for local development, added the...2023-04-19T07:14:47ZLauri HimanenAdded cli command for creating .env file for local development, added the...Added cli command for creating .env file for local development, added the creation of that file in setup_dev_env.sh.
Closes #1426Added cli command for creating .env file for local development, added the creation of that file in setup_dev_env.sh.
Closes #1426Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1222Resolve "Tabular Parser: numbers in section names in row mode give processing...2023-04-20T08:29:36ZAmir GolparvarResolve "Tabular Parser: numbers in section names in row mode give processing errors"Closes #1417Closes #1417Amir GolparvarAmir Golparvarhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1205Draft: Resolve "Yaml schemas: data section not generated if I use a specific ...2023-04-21T09:49:40ZMohammad NakhaeeDraft: Resolve "Yaml schemas: data section not generated if I use a specific name for a section"Closes #1406Closes #1406Mohammad NakhaeeMohammad Nakhaee