nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2022-12-12T17:29:42Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/979Fix qe parser #12222022-12-12T17:29:42ZAlvin Noe LadinesFix qe parser #1222Closes #1222Closes #1222Alvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/977Resolve "json annotation is not correctly shown in GUI"2022-12-13T13:11:13ZMarkus ScheidgenResolve "json annotation is not correctly shown in GUI"Closes #1188Closes #1188Amir GolparvarAmir Golparvarhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/976use the new section defs to fetch all the related references2022-12-13T12:40:07ZMohammad Nakhaeeuse the new section defs to fetch all the related referencesCloses #1215Closes #1215Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/975Resolve "Cannot run nomad oasis with the new build system"2022-12-12T09:36:17ZAdam FeketeResolve "Cannot run nomad oasis with the new build system"Closes #1219
- [x] the north container is missing `/app/nomad/jupyterhub_config.py` and `/app/dependencies/nomad-remote-tools-hub/tools.json`
- [x] the app container tries to import `asgiref`. Its in the pyproject.toml. But for some re...Closes #1219
- [x] the north container is missing `/app/nomad/jupyterhub_config.py` and `/app/dependencies/nomad-remote-tools-hub/tools.json`
- [x] the app container tries to import `asgiref`. Its in the pyproject.toml. But for some reason not installed in the final image
- [x] ~~when you try to use the dev image instead, problems arise because the `/app` folder and all files belong to `root` and not to `nomad`/1000~~Adam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/974Resolve "Entry search results details throwing an exception after reference s...2022-12-08T08:01:32ZMarkus ScheidgenResolve "Entry search results details throwing an exception after reference search dialog has been used."Closes #1217Closes #1217Markus ScheidgenMarkus Scheidgenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/962Resolve "GUI Breaks when using create Archive"2022-12-14T16:17:03ZMohammad NakhaeeResolve "GUI Breaks when using create Archive"Closes #1192Closes #1192Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/961Fixes in perovskite database2022-11-28T06:57:51ZJose Marquez PrietoFixes in perovskite databaseIt contains two fixes for the Perovskite Database schema and ELN Publication reference base section:
- Write 'perovskite' in `material.symmetry.structure_name` and removes it from `material.material_name`
- Makes sure that the DOIs add...It contains two fixes for the Perovskite Database schema and ELN Publication reference base section:
- Write 'perovskite' in `material.symmetry.structure_name` and removes it from `material.material_name`
- Makes sure that the DOIs added manually through the ELN can be navigated in `metadata.references` by adding the correct prefix if the string starts with '10.'
Changes `results.properties.optoelectronic.band_gap` to `band_gap_optical`. After merging this would require re-processing of solar cell entries in prod:
- Perovskite Solar Cell Database upload and all unpublished uploads with `solar_cell`shttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/951Added if statement to include the right prefix for the DOIs2022-11-18T10:28:50ZJose Marquez PrietoAdded if statement to include the right prefix for the DOIsCloses #1183Closes #1183https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/944Decreased the size limit for processing topology, skipped topology tests2022-11-11T14:05:49ZLauri HimanenDecreased the size limit for processing topology, skipped topology testsA hotfix for #1174.A hotfix for #1174.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/943Switched to updated matid version with fix for empty prototype cell.2022-11-11T12:51:33ZLauri HimanenSwitched to updated matid version with fix for empty prototype cell.Closes #1173Closes #1173Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/942Resolve "Reprocessing fails without add_matched_entries_to_published"2022-11-11T08:37:18ZMarkus ScheidgenResolve "Reprocessing fails without add_matched_entries_to_published"Closes #1175Closes #1175https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/939Resolve "Quantity with float value "0" is not shown in gui"2022-11-17T08:19:42ZDavid SikterResolve "Quantity with float value "0" is not shown in gui"Closes #1170. The reason for the problem was that falsey values were treated as empty values. The fix makes sure to test for if a value is undefined rather than falsey in a couple of places.
Also added fixes for three test problems (inc...Closes #1170. The reason for the problem was that falsey values were treated as empty values. The fix makes sure to test for if a value is undefined rather than falsey in a couple of places.
Also added fixes for three test problems (including the two most common reasons for GUI and python test failures).David SikterDavid Sikterhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/937Resolve "Drag and drop uses the old uploaded data"2022-11-10T16:22:08ZDavid SikterResolve "Drag and drop uses the old uploaded data"Closes #1103. The problem was that even though the `CreateEntry` button does try to refresh the options in the list whenever the upload is reprocessed, it did so without clearing the DataStore caches. This caused it to still show old dat...Closes #1103. The problem was that even though the `CreateEntry` button does try to refresh the options in the list whenever the upload is reprocessed, it did so without clearing the DataStore caches. This caused it to still show old data in the drop down.David SikterDavid Sikterhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/936> Fixed regex fermi_level in FHIaims2022-11-10T12:33:21ZJose Pizarro> Fixed regex fermi_level in FHIaimsCloses #939Closes #939https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/927Resolve "ELN: Overwriting exsiting archives"2022-11-10T09:54:42ZDavid SikterResolve "ELN: Overwriting exsiting archives"Closes #1069. The button for creating new ELN archives does not allow the creation if a file by the same name already exists. Also fixed proper error messages when moving or copying files cannot be carried out because the target already ...Closes #1069. The button for creating new ELN archives does not allow the creation if a file by the same name already exists. Also fixed proper error messages when moving or copying files cannot be carried out because the target already exists. Also extended the timeout for two long-running gui tests that often fail the CI.David SikterDavid Sikterhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/924Resolve "Items lists in results table do not display correctly"2022-11-03T12:50:34ZLauri HimanenResolve "Items lists in results table do not display correctly"Closes #1158Closes #1158https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/914Resolve "Sorting added columns in ELN Search entry fails"2022-10-31T10:38:13ZLauri HimanenResolve "Sorting added columns in ELN Search entry fails"Closes #1146Closes #1146Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/907Resolve "Python defined sections cannot be used as quantity types in yaml sch...2022-10-26T12:59:46ZMarkus ScheidgenResolve "Python defined sections cannot be used as quantity types in yaml schemas"Closes #1140Closes #1140https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/895Resolve "Deployment is broken due to celery update"2022-10-20T10:35:49ZMarkus ScheidgenResolve "Deployment is broken due to celery update"Closes #1136Closes #1136https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/888Resolve "Disable NORTH buttons on installations without NORTH"2022-10-18T15:02:19ZMarkus ScheidgenResolve "Disable NORTH buttons on installations without NORTH"Closes #1130Closes #1130Markus ScheidgenMarkus Scheidgen