nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2023-02-27T15:56:53Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1121Minor fix workflow visualizer2023-02-27T15:56:53ZAlvin Noe LadinesMinor fix workflow visualizerAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1120Resolve "Add GUI Annotation Examples to Documentation"2023-03-13T09:55:08ZMohammad NakhaeeResolve "Add GUI Annotation Examples to Documentation"Closes #1335Closes #1335Mohammad NakhaeeMohammad Nakhaeehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1118Minor workflow visualizer fix2023-02-25T20:51:20ZAlvin Noe LadinesMinor workflow visualizer fixFix link in workflow visualizerFix link in workflow visualizerAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1116Resolve "Tabular parser - using column and row modes together only works for ...2023-03-13T13:41:43ZAmir GolparvarResolve "Tabular parser - using column and row modes together only works for children repeated sections"The top most section that inherits from TableData enforces that all the subsequent subsections should retain the same mode of operation as the top most section. For example, when top most section is annotated with column mode, then all s...The top most section that inherits from TableData enforces that all the subsequent subsections should retain the same mode of operation as the top most section. For example, when top most section is annotated with column mode, then all sub-sections should be annotated with column mode as well. This causes some limitations when implementing a mixed mode in an ELN YAML/JSON file.
Closes #1354Amir GolparvarAmir Golparvarhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1115Fixed issue with displaying band structures and brillouin zone for entries wi...2023-02-24T08:42:42ZLauri HimanenFixed issue with displaying band structures and brillouin zone for entries with missing reciprocal cell.Fixed issue with displaying band structures and Brillouin zone for entries that are missing the reciprocal cell.
Closes #1246Fixed issue with displaying band structures and Brillouin zone for entries that are missing the reciprocal cell.
Closes #1246Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1114Resolve "North fiji tool crashing at stratup"2023-02-23T11:08:03ZAdam FeketeResolve "North fiji tool crashing at stratup"Closes #1358Closes #1358Adam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1113Workflow fix2023-02-22T20:37:23ZAlvin Noe LadinesWorkflow fixImplement various small fixes and improvements to the workflow visualizerImplement various small fixes and improvements to the workflow visualizerAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1111Draft: Add Feature for Descriptive Array Quantity2023-06-12T14:05:35ZHampus NaesstroemDraft: Add Feature for Descriptive Array Quantity### Aims to:
Closes #1352
### Tasks:
- [ ] Write tests
- [ ] Add classes
- [ ] NumericalArray
- [ ] ContextArray
- [ ] Write documentation### Aims to:
Closes #1352
### Tasks:
- [ ] Write tests
- [ ] Add classes
- [ ] NumericalArray
- [ ] ContextArray
- [ ] Write documentationHampus NaesstroemHampus Naesstroemhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1110Add Feature for Plotting Scalar Values in XYPlot2023-02-23T06:45:34ZHampus NaesstroemAdd Feature for Plotting Scalar Values in XYPlotAdded feature for plotting scalars from repeating subsections
Closes #1333
The following yaml:
```yaml
definitions:
name: My Plot Test
sections:
MySection:
base_section: nomad.datamodel.data.ArchiveSection
quantiti...Added feature for plotting scalars from repeating subsections
Closes #1333
The following yaml:
```yaml
definitions:
name: My Plot Test
sections:
MySection:
base_section: nomad.datamodel.data.ArchiveSection
quantities:
x_value:
type: int
y_value:
type: int
y2_value:
type: int
MyTopSection:
base_section: nomad.datamodel.data.EntryData
m_annotations:
plot:
- label: My values
x: my_sections/:/x_value
y:
- my_sections/:/y_value
- my_sections/:/y2_value
sub_sections:
my_sections:
section: MySection
repeats: True
data:
m_def: MyTopSection
my_sections:
- x_value: 1
y_value: -1
y2_value: -5
- x_value: 2
y_value: -2
y2_value: -4
- x_value: 3
y_value: -3
y2_value: -3
- x_value: 4
y_value: -4
y2_value: -2
- x_value: 5
y_value: -5
y2_value: -1
```
No gives the following plot:
![image](/uploads/aada2a647b300ca9625d0cbbf6d1bddc/image.png)Hampus NaesstroemHampus Naesstroemhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1109Small fixes to prepare for the production deployment.2023-03-01T06:31:36ZMarkus ScheidgenSmall fixes to prepare for the production deployment.There is still a couple of issues that need to be adressed before publishing v1.1.7 to the production deployment of nomad.
- [x] The k8s value for north.enabled is not working.
- [x] There should be error handling in the app start to de...There is still a couple of issues that need to be adressed before publishing v1.1.7 to the production deployment of nomad.
- [x] The k8s value for north.enabled is not working.
- [x] There should be error handling in the app start to deal with breaking changes in `env.js`. Otherwise, users are stuck with old implementations in the service worker.
- [x] #1095Markus ScheidgenMarkus Scheidgenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1108BSE and Core-hole methods, Spectra metainfo and [exciting, OCEAN, Quantum Esp...2023-03-13T04:01:39ZJose PizarroBSE and Core-hole methods, Spectra metainfo and [exciting, OCEAN, Quantum Espresso XSpectra]First set of tasks in #1316First set of tasks in #1316Jose PizarroJose Pizarrohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1106Adjust asap parser matching spec2023-02-21T12:59:36ZAlvin Noe LadinesAdjust asap parser matching specCloses #1348Closes #1348Alvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1105Resolve ".volumes folder structure is missing from nomad-oasis.zip"2023-02-21T12:53:14ZAdam FeketeResolve ".volumes folder structure is missing from nomad-oasis.zip"Closes #1350Closes #1350Adam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1104Resolve "Pydantic models for UI config."2023-02-27T14:06:50ZLauri HimanenResolve "Pydantic models for UI config."Closes #1257, #1334.Closes #1257, #1334.Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1103Resolve "NORTH: the updated tool image has not been updated on the deployment"2023-02-21T12:53:55ZAdam FeketeResolve "NORTH: the updated tool image has not been updated on the deployment"Closes #1347Closes #1347Adam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1102Fixed issue with retrieving entry_id from older entries.2023-02-17T11:22:40ZLauri HimanenFixed issue with retrieving entry_id from older entries.Closes #1344Closes #1344https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1101Resolve "Add Feature for Creating Workflow in ELN"2023-03-05T16:29:59ZHampus NaesstroemResolve "Add Feature for Creating Workflow in ELN"Closes #1346Closes #1346https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1100Quickfix: unavailable persistent volume claim of north tools in the staging d...2023-02-16T13:27:47ZAdam FeketeQuickfix: unavailable persistent volume claim of north tools in the staging deploymentCloses #1343Closes #1343Adam FeketeAdam Feketehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1099Added a config switch to enable disable north tools.2023-02-16T15:37:40ZMarkus ScheidgenAdded a config switch to enable disable north tools.This config switch will disable enable the north API
and north UI elements depending on a `north.enabled: bool`
config value. This switch is also available for the
helm chart.
Changelog: AddedThis config switch will disable enable the north API
and north UI elements depending on a `north.enabled: bool`
config value. This switch is also available for the
helm chart.
Changelog: Addedhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1098Resolve "Bug when Inheriting from Section with Overwritten Property"2023-02-16T07:45:45ZMarkus ScheidgenResolve "Bug when Inheriting from Section with Overwritten Property"Closes #1341
Fixed wrong property inheritance base section order in UI metainfo.
The order of base sections used to determine the order in
which inherited properties are considered was wrong. This
caused to inherit more abstract proper...Closes #1341
Fixed wrong property inheritance base section order in UI metainfo.
The order of base sections used to determine the order in
which inherited properties are considered was wrong. This
caused to inherit more abstract properties over more
concrete ones.