nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2023-03-09T10:20:27Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1141Increased the celery timeout on the util deployment.2023-03-09T10:20:27ZMarkus ScheidgenIncreased the celery timeout on the util deployment.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1135Changed the branding of the app.2023-03-09T08:38:50ZMarkus ScheidgenChanged the branding of the app.We recently updated nomad logos and colors. This applies these
changes to the apps theme and used logos.
Changelog: ChangedWe recently updated nomad logos and colors. This applies these
changes to the apps theme and used logos.
Changelog: Changedhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1136Add parsers2023-03-07T11:12:25ZAlvin Noe LadinesAdd parsersAdd xtb and bopfox parsers
Minor normalizer and parser fixesAdd xtb and bopfox parsers
Minor normalizer and parser fixesAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1065Electronic Greens functions and overview page for DMFT2023-03-07T08:43:44ZJose PizarroElectronic Greens functions and overview page for DMFTCloses #1267Closes #1267Jose PizarroJose Pizarrohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1125Upgrade python version2023-03-07T08:23:58ZMarkus ScheidgenUpgrade python versionUpgraded nomad-lab to Python 3.9 and bumped a few dependency version.
Changelog: Changed
- updated to python 3.9
- only bumped what was necessary in this first step
- add a mypy.ini to remove longer and longer arg-based config from pyl...Upgraded nomad-lab to Python 3.9 and bumped a few dependency version.
Changelog: Changed
- updated to python 3.9
- only bumped what was necessary in this first step
- add a mypy.ini to remove longer and longer arg-based config from pylint calls
- some minor code fixes due to new version of mypy and pylint
With 3.9, i mean that we now build and run with 3.9. The min required is only 3.8. I guess, we could go even higher, if this is successful.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1134Fixed the availability of the beta/test snack in the UI.2023-03-06T15:24:00ZMarkus ScheidgenFixed the availability of the beta/test snack in the UI.The UI should show a snack that informs users, if there
are not using the official NOMAD, but a test or beta installation.
This snack was not shown due to a problem in the new config
model.
Changelog: Fixed.The UI should show a snack that informs users, if there
are not using the official NOMAD, but a test or beta installation.
This snack was not shown due to a problem in the new config
model.
Changelog: Fixed.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1133Added coveragerc to improve python coverage report.2023-03-06T12:44:41ZMarkus ScheidgenAdded coveragerc to improve python coverage report.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1088Resolve "Tabular Parser: sub_sub_sections in row mode"2023-03-06T10:08:21ZAmir GolparvarResolve "Tabular Parser: sub_sub_sections in row mode"If multiple instances of a given a tabular-annotated Quantity in the excel sheet/csv file exists (meaning multiple columns with the same name exists in the excel sheet/csv file), then for each, a new section is supposed to be appended to...If multiple instances of a given a tabular-annotated Quantity in the excel sheet/csv file exists (meaning multiple columns with the same name exists in the excel sheet/csv file), then for each, a new section is supposed to be appended to the appropriate (repeating) subsection
Closes #1287Amir GolparvarAmir Golparvarhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1132Fix backend test badge2023-03-06T08:48:33ZMarkus ScheidgenFix backend test badgehttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1101Resolve "Add Feature for Creating Workflow in ELN"2023-03-05T16:29:59ZHampus NaesstroemResolve "Add Feature for Creating Workflow in ELN"Closes #1346Closes #1346https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1131Fixed the backend test batch to actually show the coverage.2023-03-05T12:03:05ZMarkus ScheidgenFixed the backend test batch to actually show the coverage.Changelog: FixedChangelog: Fixedhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1126Resolve "Hyperlink to entry in scatter plot widget and hover details"2023-03-03T09:50:09ZJose Marquez PrietoResolve "Hyperlink to entry in scatter plot widget and hover details"Closes #1364Closes #1364Jose Marquez PrietoJose Marquez Prietohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1130Resolve "Perovskite formula normalizer returns incorrect values"2023-03-03T08:53:35ZJose Marquez PrietoResolve "Perovskite formula normalizer returns incorrect values"Closes #1372Closes #1372Jose Marquez PrietoJose Marquez Prietohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1129Resolve "Update Code Guidelines on Docstrings in Documentation"2023-03-03T08:40:05ZMarkus ScheidgenResolve "Update Code Guidelines on Docstrings in Documentation"Closes #1369Closes #1369https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1040Implement handling of large data in archive #12162023-03-03T08:06:31ZAlvin Noe LadinesImplement handling of large data in archive #1216Implement serialization of large datasets into hdf5 file. On the parser side, implemented parsing of CHGCAR file.Implement serialization of large datasets into hdf5 file. On the parser side, implemented parsing of CHGCAR file.Alvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1128Fixed missing tools.json problem.2023-03-02T08:02:45ZMarkus ScheidgenFixed missing tools.json problem.The config cannot find the right default tools.json file when
run from not the project root directly. This fix is trying
to use the given file as it if, if fails uses the given file
relative to the project root.
This is related to #1353...The config cannot find the right default tools.json file when
run from not the project root directly. This fix is trying
to use the given file as it if, if fails uses the given file
relative to the project root.
This is related to #1353.
Changlog: Fixedhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1109Small fixes to prepare for the production deployment.2023-03-01T06:31:36ZMarkus ScheidgenSmall fixes to prepare for the production deployment.There is still a couple of issues that need to be adressed before publishing v1.1.7 to the production deployment of nomad.
- [x] The k8s value for north.enabled is not working.
- [x] There should be error handling in the app start to de...There is still a couple of issues that need to be adressed before publishing v1.1.7 to the production deployment of nomad.
- [x] The k8s value for north.enabled is not working.
- [x] There should be error handling in the app start to deal with breaking changes in `env.js`. Otherwise, users are stuck with old implementations in the service worker.
- [x] #1095Markus ScheidgenMarkus Scheidgenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1123Check existance of `m_proxy_value` for references.2023-02-28T13:24:51ZTheodore ChangCheck existance of `m_proxy_value` for references.Check existance of `m_proxy_value` for references as the criterion.
Use existance of `m_proxy_value` as the criterion of reference detection. Proxies will be automatically resolved which changes its type.
Changelog: Fixed
Closes #1365Check existance of `m_proxy_value` for references as the criterion.
Use existance of `m_proxy_value` as the criterion of reference detection. Proxies will be automatically resolved which changes its type.
Changelog: Fixed
Closes #1365Theodore ChangTheodore Changhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1121Minor fix workflow visualizer2023-02-27T15:56:53ZAlvin Noe LadinesMinor fix workflow visualizerAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1070Resolve "using a schema that is in a different upload"2023-02-27T14:35:56ZMohammad NakhaeeResolve "using a schema that is in a different upload"Closes #1295Closes #1295Mohammad NakhaeeMohammad Nakhaee