nomad-FAIR merge requestshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests2023-10-02T15:28:18Zhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1472Add AppTokenForm to APIs page2023-10-02T15:28:18ZSascha KlawohnAdd AppTokenForm to APIs pageCloses #1681
TODO: Fix typo when squashing (AppFormToken -> AppTokenForm)Closes #1681
TODO: Fix typo when squashing (AppFormToken -> AppTokenForm)Sascha KlawohnSascha Klawohnhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1471Add presence regex2023-09-26T12:32:23ZNathan DaelmanAdd presence regexCloses #1687Closes #1687Nathan DaelmanNathan Daelmanhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1470Fixed issue in serializing and deserializing boolean values, fixed issue in M...2023-09-25T08:28:40ZLauri HimanenFixed issue in serializing and deserializing boolean values, fixed issue in MD...Fixed issue in serializing and deserializing boolean values, fixed issue in MD menu not showing filters.
Closes #1694Fixed issue in serializing and deserializing boolean values, fixed issue in MD menu not showing filters.
Closes #1694Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1469Resolve "Apps for python schemas"2023-09-21T13:07:11ZLauri HimanenResolve "Apps for python schemas"Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1468Fixes export option in H5Web2023-09-21T06:10:47ZSherjeel ShabihFixes export option in H5WebH5Web was not able to export data into npy/csv files. This adds the necessary client code to make it work within Nomad. H5Web would just open the path in a new window and this didn't have our Authorization header. With the new code, it d...H5Web was not able to export data into npy/csv files. This adds the necessary client code to make it work within Nomad. H5Web would just open the path in a new window and this didn't have our Authorization header. With the new code, it downloads the file using axios and emulates a click on an HREF tag. All of this is done silently by the H5Web component.
@josma This should fix it. Please have a look if it works for you. I'll spin up an instance of this branch for you to test.
![image](/uploads/7b8c524a35a763ce59ec1e50c8dcf12f/image.png){width=40%}Sherjeel ShabihSherjeel Shabihhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1467Fix bug in `Sandwiched LTE/GTE query`2023-09-27T14:52:08ZNathan DaelmanFix bug in `Sandwiched LTE/GTE query`Closes #1686Closes #1686Nathan DaelmanNathan Daelmanhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1466Resolve "New thermostat metadata needed for OpenMX parsing of MD data"2023-09-21T14:26:10ZJoseph RudzinskiResolve "New thermostat metadata needed for OpenMX parsing of MD data"Closes #1684
I have simply added repeats to the sections ThermostatParameters and BarostatParameters here and added 1 enum value for thermostat type.Closes #1684
I have simply added repeats to the sections ThermostatParameters and BarostatParameters here and added 1 enum value for thermostat type.Joseph RudzinskiJoseph Rudzinskihttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1465Added metadata in results to search for measurements and in particular xrd2023-09-27T13:25:22ZJose Marquez PrietoAdded metadata in results to search for measurements and in particular xrdThis adds a few sections and quantities to the current results to make measurements searchable. It will start being populated from schemas and parsers developed in https://github.com/FAIRmat-NFDI/nomad-measurements.
@himanel1 can you h...This adds a few sections and quantities to the current results to make measurements searchable. It will start being populated from schemas and parsers developed in https://github.com/FAIRmat-NFDI/nomad-measurements.
@himanel1 can you have a look at this? Should be a quick one for you. In the future, we can refactor the EBSD database and remove the top-level measurements section.
@lucamghi, @sbrueck, @sanbrock, @hnaesstroem I tagged you just in case you want to have a second look at it.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1464Minor fix solid dmft2023-09-26T15:03:19ZJose PizarroMinor fix solid dmftMinor metainfo adjustements to allocate for better parsing of solid_dmft and other DMFT parsers: https://github.com/nomad-coe/electronic-parsers/pull/164Minor metainfo adjustements to allocate for better parsing of solid_dmft and other DMFT parsers: https://github.com/nomad-coe/electronic-parsers/pull/164Jose PizarroJose Pizarrohttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1463Resolve "High accuracy porosity modification"2023-09-15T11:18:55ZDinga WonankeResolve "High accuracy porosity modification"The initial code only computed standard porosity. But now included a functionality such that it should perform high accuracy computation of
porosity. The high accuracy computation has now been set as the default value. Some minor change...The initial code only computed standard porosity. But now included a functionality such that it should perform high accuracy computation of
porosity. The high accuracy computation has now been set as the default value. Some minor changes have also been made on the python doc string.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1462Resolve "Update orjson"2023-09-15T12:29:44ZLauri HimanenResolve "Update orjson"Closes #1656Closes #1656Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1461Resolve "NGL viewer update"2023-09-15T09:24:15ZLauri HimanenResolve "NGL viewer update"Closes #1424Closes #1424Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1460Resolve "Application Token"2023-09-19T14:01:54ZSascha KlawohnResolve "Application Token"Closes #1654
Implements endpoint `/app_token?expires_in=<int>` for simple tokens like the signature token to access every endpoint available with the Keycloak access token via the `Authorization: Bearer <app token>` header. Adds tests ...Closes #1654
Implements endpoint `/app_token?expires_in=<int>` for simple tokens like the signature token to access every endpoint available with the Keycloak access token via the `Authorization: Bearer <app token>` header. Adds tests for requesting the both app and signature token with and without authorization. Adds a single test to access a restricted endpoint (`/users/me`) with the app token.https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1459Add check for `normalization_factors` for the `Normalize intensities` optino...2023-09-11T08:35:42ZNathan DaelmanAdd check for `normalization_factors` for the `Normalize intensities` optino...Add check for `normalization_factors` for the `Normalize intensities` option under the DOS kebab menu
Closes #1663Add check for `normalization_factors` for the `Normalize intensities` option under the DOS kebab menu
Closes #1663Nathan DaelmanNathan Daelmanhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1458Update parser2023-09-07T11:05:16ZAlvin Noe LadinesUpdate parserAlvin Noe LadinesAlvin Noe Ladineshttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1457Resolve "Authentication problem"2023-09-01T15:58:25ZLauri HimanenResolve "Authentication problem"Closes #1673Closes #1673Lauri HimanenLauri Himanenhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1456Resolve "Add Activity ID to ExperiementStep"2023-09-01T13:15:42ZHampus NaesstroemResolve "Add Activity ID to ExperiementStep"Closes #1672Closes #1672Hampus NaesstroemHampus Naesstroemhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1455Resolve "Basesections Should Populate Workflow Section"2023-10-20T13:02:58ZHampus NaesstroemResolve "Basesections Should Populate Workflow Section"Closes #1658Closes #1658Hampus NaesstroemHampus Naesstroemhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1454Resolve "ReadableIdentifiers Normalizers Fails"2023-09-08T09:07:13ZHampus NaesstroemResolve "ReadableIdentifiers Normalizers Fails"Closes #1670
Closes #1594Closes #1670
Closes #1594Hampus NaesstroemHampus Naesstroemhttps://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR/-/merge_requests/1453Updated ref to electronic-parsers with CP2K fix2023-08-29T08:18:05ZJose PizarroUpdated ref to electronic-parsers with CP2K fix