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  • nomad-labnomad-lab
  • nomad-FAIRnomad-FAIR
  • Issues
  • #722
Closed
Open
Issue created Jan 19, 2022 by Markus Scheidgen@mscheidgOwner3 of 21 checklist items completed3/21 checklist items

Even even more v1 parser errors

@ladinesa some stuff is not parsing, others you had before ... sorry for the duplicates. Just see if you can do something.

  • 254821 entries (9 uploads) x parsers/gaussian: izLzrw0-TZiD8nPFwsBSCw/9 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1035, in parsing
    self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/gaussianparser/gaussian_parser.py", line 1116, in parse
    self.parse_configurations(n)
  File "/usr/local/lib/python3.7/site-packages/gaussianparser/gaussian_parser.py", line 926, in parse_configurations
    sec_scc = self.parse_scc(calculation)
  File "/usr/local/lib/python3.7/site-packages/gaussianparser/gaussian_parser.py", line 823, in parse_scc
    reduced_masses = np.hstack(reduced_masses) * ureg.amu
  File "/usr/local/lib/python3.7/site-packages/pint/unit.py", line 291, in __array_ufunc__
    **kwargs,
  File "/usr/local/lib/python3.7/site-packages/pint/quantity.py", line 1655, in __array_ufunc__
    return numpy_wrap("ufunc", ufunc, inputs, kwargs, types)
  File "/usr/local/lib/python3.7/site-packages/pint/numpy_func.py", line 921, in numpy_wrap
    return handled[name](*args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pint/numpy_func.py", line 303, in implementation
    result_magnitude = func(*stripped_args, **stripped_kwargs)
numpy.core._exceptions._UFuncNoLoopError: ufunc 'multiply' did not contain a loop with signature matching types (dtype('<U32'), dtype('int64')) -> None
  • 58121 entries (73 uploads) x parsers/vaspoutcar: liAEq9vNSl-gfDXo-gO1dA/73 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1060, in normalizing
    normalizer(self._parser_results).normalize(logger=logger)
  File "/app/nomad/normalizing/results.py", line 102, in normalize
    self.normalize_run(logger=self.logger)
  File "/app/nomad/normalizing/results.py", line 223, in normalize_run
    logger
  File "/app/nomad/normalizing/material.py", line 77, in material
    material.material_name = self.material_name(symbols, reduced_counts)
  File "/app/nomad/normalizing/material.py", line 221, in material_name
    atomicnumbers = [ase.data.atomic_numbers[i] for i in symbols]
  File "/app/nomad/normalizing/material.py", line 221, in <listcomp>
    atomicnumbers = [ase.data.atomic_numbers[i] for i in symbols]
KeyError: 'Tl_d'
  • 45437 entries (1 uploads) x missing/fhi-aims: 0D4TR7I6R1WBrdPAYgSo1Q/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1055, in normalizing
    normalizer(self._parser_results).normalize(logger=logger)
  File "/app/nomad/normalizing/results.py", line 102, in normalize
    self.normalize_run(logger=self.logger)
  File "/app/nomad/normalizing/results.py", line 225, in normalize_run
    results.method = MethodNormalizer(self.entry_archive, repr_system, results.material, logger).method()
  File "/app/nomad/normalizing/method.py", line 105, in method
    settings_basis_set = get_basis_set(self.entry_archive, self.repr_method, self.repr_system, self.logger)
  File "/app/nomad/normalizing/method.py", line 455, in get_basis_set
    return settings.to_dict()
  File "/app/nomad/normalizing/method.py", line 508, in to_dict
    aims_bs = self._repr_method.x_fhi_aims_section_controlIn_basis_set
AttributeError: 'NoneType' object has no attribute 'x_fhi_aims_section_controlIn_basis_set'
  • 45383 entries (1 uploads) x missing/fhi-aims: 0D4TR7I6R1WBrdPAYgSo1Q/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1060, in normalizing
    normalizer(self._parser_results).normalize(logger=logger)
  File "/app/nomad/normalizing/results.py", line 102, in normalize
    self.normalize_run(logger=self.logger)
  File "/app/nomad/normalizing/results.py", line 225, in normalize_run
    results.method = MethodNormalizer(self.entry_archive, repr_system, results.material, logger).method()
  File "/app/nomad/normalizing/method.py", line 105, in method
    settings_basis_set = get_basis_set(self.entry_archive, self.repr_method, self.repr_system, self.logger)
  File "/app/nomad/normalizing/method.py", line 455, in get_basis_set
    return settings.to_dict()
  File "/app/nomad/normalizing/method.py", line 508, in to_dict
    aims_bs = self._repr_method.x_fhi_aims_section_controlIn_basis_set
AttributeError: 'NoneType' object has no attribute 'x_fhi_aims_section_controlIn_basis_set'
  • 1891 entries (1 uploads) x parsers/vasp: f5QGcneYR_SPdLn6UprY6g/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/base.py", line 790, in proc_task
    rv = unwrapped_func(proc, *args, **kwargs)
  File "/app/nomad/processing/data.py", line 947, in process_calc
    self._initialize_metadata_for_processing()
  File "/app/nomad/processing/data.py", line 759, in _initialize_metadata_for_processing
    self._apply_metadata_from_process(self._entry_metadata)
  File "/app/nomad/processing/data.py", line 770, in _apply_metadata_from_process
    entry_metadata.calc_hash = self.upload_files.calc_hash(self.mainfile)
  File "/app/nomad/files.py", line 1075, in calc_hash
    for filepath in self.calc_files(mainfile):
  File "/app/nomad/files.py", line 1038, in calc_files
    raise KeyError(mainfile)
KeyError: 'to_nomad/Pt_surface_C/plus_1/Os/UncleanOs/vasprun.xml'
  • 451 entries (8 uploads) x parsers/vaspoutcar: fnheOhs7Q3W3GCf710gQQQ/8 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1060, in normalizing
    normalizer(self._parser_results).normalize(logger=logger)
  File "/app/nomad/normalizing/results.py", line 102, in normalize
    self.normalize_run(logger=self.logger)
  File "/app/nomad/normalizing/results.py", line 223, in normalize_run
    logger
  File "/app/nomad/normalizing/material.py", line 62, in material
    symbols, reduced_counts = atomutils.get_hill_decomposition(self.repr_system.atoms.labels, reduced=True)
  File "/app/nomad/atomutils.py", line 416, in get_hill_decomposition
    greatest_common_divisor = reduce(math.gcd, counts)
TypeError: reduce() of empty sequence with no initial value
  • 405 entries (17 uploads) x parsers/phonopy: m50lbvjYS_aHm_aqBmyLGQ/17 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1067, in normalizing
    parser.after_normalization(self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/phonopyparser/phonopy_parser.py", line 490, in after_normalization
    first_referenced_calculation = archive.run[0].calculation[0].calculations_ref[0]
IndexError: list index out of range
  • 384 entries (2 uploads) x parsers/cp2k: xo1qblJBQz2CqyohkNcLvA/2 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1030, in parsing
    self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/cp2kparser/cp2k_parser.py", line 1542, in parse
    self.parse_configurations_quickstep()
  File "/usr/local/lib/python3.7/site-packages/cp2kparser/cp2k_parser.py", line 1231, in parse_configurations_quickstep
    parse_calculations(optimization_steps)
  File "/usr/local/lib/python3.7/site-packages/cp2kparser/cp2k_parser.py", line 1213, in parse_calculations
    sec_system = self.parse_system(atomic_coord)
  File "/usr/local/lib/python3.7/site-packages/cp2kparser/cp2k_parser.py", line 1090, in parse_system
    trajectory = self.get_trajectory(frame)
  File "/usr/local/lib/python3.7/site-packages/cp2kparser/cp2k_parser.py", line 872, in get_trajectory
    result = self.traj_parser.trajectory[0]
IndexError: list index out of range
  • 184 entries (36 uploads) x parsers/vaspoutcar: kPbFtrDlT1aKTsmtjEcCvg/36 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1060, in normalizing
    normalizer(self._parser_results).normalize(logger=logger)
  File "/app/nomad/normalizing/results.py", line 102, in normalize
    self.normalize_run(logger=self.logger)
  File "/app/nomad/normalizing/results.py", line 223, in normalize_run
    logger
  File "/app/nomad/normalizing/material.py", line 77, in material
    material.material_name = self.material_name(symbols, reduced_counts)
  File "/app/nomad/normalizing/material.py", line 217, in material_name
    number = ase.data.atomic_numbers[symbols[0]]
KeyError: 'Ca_pv'
  • 159 entries (2 uploads) x parsers/phonopy: hJ1VDLF2Rhi-AnIvEORmpw/2 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1067, in normalizing
    parser.after_normalization(self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/phonopyparser/phonopy_parser.py", line 493, in after_normalization
    new_method = referenced_archive.results.method.m_copy()
AttributeError: 'NoneType' object has no attribute 'method'
  • 102 entries (1 uploads) x parsers/fhi-aims: ZfvOYghQTZyiahb0xo4lMQ/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1035, in parsing
    self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/fhiaimsparser/fhiaims_parser.py", line 1440, in parse
    self.parse_configurations()
  File "/usr/local/lib/python3.7/site-packages/fhiaimsparser/fhiaims_parser.py", line 1129, in parse_configurations
    parse_section(section)
  File "/usr/local/lib/python3.7/site-packages/fhiaimsparser/fhiaims_parser.py", line 1032, in parse_section
    sec_atoms.positions = structure.get('positions') * ureg.angstrom
  File "/usr/local/lib/python3.7/site-packages/pint/unit.py", line 187, in __mul__
    return self._REGISTRY.Quantity(1, self._units) * other
TypeError: unsupported operand type(s) for *: 'Quantity' and 'NoneType'
  • 57 entries (1 uploads) x parsers/atk: WQgXb3oxSYuOrApLWoiw6w/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/normalizing/system.py", line 256, in system_type_analysis
    cls = classifier.classify(atoms)
  File "/usr/local/lib/python3.7/site-packages/matid/classification/classifier.py", line 185, in classify
    system.wrap()
  File "/usr/local/lib/python3.7/site-packages/ase/atoms.py", line 1890, in wrap
    self.positions[:] = self.get_positions(wrap=True, **wrap_kw)
  File "/usr/local/lib/python3.7/site-packages/ase/atoms.py", line 678, in get_positions
    return wrap_positions(self.positions, self.cell, **wrap_kw)
  File "/usr/local/lib/python3.7/site-packages/ase/geometry/geometry.py", line 77, in wrap_positions
    assert np.asarray(cell)[np.asarray(pbc)].any(axis=1).all(), (cell, pbc)
AssertionError: (Cell([0.0, 0.0, 0.0]), array([ True,  True,  True]))
  • 44 entries (8 uploads) x parsers/vaspoutcar: j9qDBjUkQtKY5Ak_i_H7MQ/8 (v1), raw files (v0)
Traceback (most recent call last):
  File "/usr/local/lib/python3.7/site-packages/billiard/pool.py", line 1267, in mark_as_worker_lost
    human_status(exitcode), job._job),
billiard.exceptions.WorkerLostError: Worker exited prematurely: signal 9 (SIGKILL) Job: 743127.
  • 38 entries (2 uploads) x parsers/phonopy: gALX4N-AQCy2ZtIx3Jf_ow/2 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1101, in write_archive
    write_partial_archive_to_mongo(archive)
  File "/app/nomad/archive/partial.py", line 128, in write_partial_archive_to_mongo
    mongo_collection.replace_one(dict(_id=mongo_id), partial_archive_dict, upsert=True)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 947, in replace_one
    collation=collation, hint=hint, session=session),
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 870, in _update_retryable
    _update, session)
  File "/usr/local/lib/python3.7/site-packages/pymongo/mongo_client.py", line 1498, in _retryable_write
    return self._retry_with_session(retryable, func, s, None)
  File "/usr/local/lib/python3.7/site-packages/pymongo/mongo_client.py", line 1384, in _retry_with_session
    return self._retry_internal(retryable, func, session, bulk)
  File "/usr/local/lib/python3.7/site-packages/pymongo/mongo_client.py", line 1416, in _retry_internal
    return func(session, sock_info, retryable)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 866, in _update
    retryable_write=retryable_write)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 836, in _update
    retryable_write=retryable_write).copy()
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 699, in command
    self._raise_connection_failure(error)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 694, in command
    exhaust_allowed=exhaust_allowed)
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 136, in command
    name, size, max_bson_size + message._COMMAND_OVERHEAD)
  File "/usr/local/lib/python3.7/site-packages/pymongo/message.py", line 1092, in _raise_document_too_large
    raise DocumentTooLarge("%r command document too large" % (operation,))
pymongo.errors.DocumentTooLarge: 'update' command document too large
  • 27 entries (1 uploads) x parsers/quantumespresso: t1Yy3492Sr6wXMHG_5FuzA/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1030, in parsing
    self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/quantumespressoparser/quantum_espresso_parser.py", line 2748, in parse
    self.parse_configurations(run)
  File "/usr/local/lib/python3.7/site-packages/quantumespressoparser/quantum_espresso_parser.py", line 2474, in parse_configurations
    parse_configuration(calculation)
  File "/usr/local/lib/python3.7/site-packages/quantumespressoparser/quantum_espresso_parser.py", line 2462, in parse_configuration
    sec_scc = self.parse_scc(run, calculation)
  File "/usr/local/lib/python3.7/site-packages/quantumespressoparser/quantum_espresso_parser.py", line 2230, in parse_scc
    sec_energy.highest_occupied = [homo] * ureg.eV
  File "/usr/local/lib/python3.7/site-packages/pint/unit.py", line 187, in __mul__
    return self._REGISTRY.Quantity(1, self._units) * other
  File "/usr/local/lib/python3.7/site-packages/pint/quantity.py", line 1249, in __mul__
    return self._mul_div(other, operator.mul)
  File "/usr/local/lib/python3.7/site-packages/pint/quantity.py", line 115, in wrapped
    return f(self, *args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pint/quantity.py", line 95, in wrapped
    result = f(self, *args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pint/quantity.py", line 1215, in _mul_div
    magnitude = magnitude_op(self._magnitude, other_magnitude)
numpy.core._exceptions._UFuncNoLoopError: ufunc 'multiply' did not contain a loop with signature matching types (dtype('int64'), dtype('<U6')) -> None
  • 26 entries (1 uploads) x parsers/vaspoutcar: V00YCQzDTMaKSqh31hzBkw/1 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 1035, in parsing
    self._parser_results, logger=logger)
  File "/usr/local/lib/python3.7/site-packages/vaspparser/vasp_parser.py", line 1497, in parse
    self.parse_workflow()
  File "/usr/local/lib/python3.7/site-packages/vaspparser/vasp_parser.py", line 1276, in parse_workflow
    if tolerance > 0:
TypeError: '>' not supported between instances of 'str' and 'int'
  • 22 entries (14 uploads) x parsers/quantumespresso: tahRaqSlQoiiCjnjspQWVw/14 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/normalizing/system.py", line 298, in symmetry_analysis
    space_group_number = symm.get_space_group_number()
  File "/usr/local/lib/python3.7/site-packages/matid/symmetry/symmetryanalyzer.py", line 114, in get_space_group_number
    dataset = self.get_symmetry_dataset()
  File "/usr/local/lib/python3.7/site-packages/matid/symmetry/symmetryanalyzer.py", line 566, in get_symmetry_dataset
    'Spglib error when finding symmetry dataset.')
matid.exceptions.CellNormalizationError: Spglib error when finding symmetry dataset.
  • 21 entries (2 uploads) x parsers/vasp: nyEHG1KUTtOB6ao5gf_rsA/2 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/base.py", line 790, in proc_task
    rv = unwrapped_func(proc, *args, **kwargs)
  File "/app/nomad/processing/data.py", line 951, in process_entry
    self.archiving()
  File "/app/nomad/processing/data.py", line 1070, in archiving
    self.set_last_status_message('Archiving')
  File "/app/nomad/processing/base.py", line 408, in set_last_status_message
    self.save()
  File "/usr/local/lib/python3.7/site-packages/mongoengine/document.py", line 407, in save
    self.ensure_indexes()
  File "/usr/local/lib/python3.7/site-packages/mongoengine/document.py", line 924, in ensure_indexes
    collection.create_index(fields, background=background, **opts)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 2059, in create_index
    return self.__create_indexes([index], session, **cmd_options)[0]
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 1953, in __create_indexes
    session=session)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 253, in _command
    user_fields=user_fields)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 699, in command
    self._raise_connection_failure(error)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 694, in command
    exhaust_allowed=exhaust_allowed)
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 161, in command
    parse_write_concern_error=parse_write_concern_error)
  File "/usr/local/lib/python3.7/site-packages/pymongo/helpers.py", line 151, in _check_command_response
    raise NotMasterError(errmsg, response)
pymongo.errors.NotMasterError: Not primary while creating indexes in nomad_prod_v1.entry, full error: {'topologyVersion': {'processId': ObjectId('61d714caeba9a85081e39c62'), 'counter': 8}, 'operationTime': Timestamp(1641532639, 5), 'ok': 0.0, 'errmsg': 'Not primary while creating indexes in nomad_prod_v1.entry', 'code': 10107, 'codeName': 'NotWritablePrimary', '$clusterTime': {'clusterTime': Timestamp(1641532640, 2), 'signature': {'hash': b'\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00', 'keyId': 0}}}
  • 20 entries (3 uploads) x parsers/vasp: 0RjmR6NDS2adGbVVHqu-RA/3 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/base.py", line 790, in proc_task
    rv = unwrapped_func(proc, *args, **kwargs)
  File "/app/nomad/processing/data.py", line 950, in process_entry
    self.normalizing()
  File "/app/nomad/processing/data.py", line 1039, in normalizing
    self.set_last_status_message('Normalizing')
  File "/app/nomad/processing/base.py", line 408, in set_last_status_message
    self.save()
  File "/usr/local/lib/python3.7/site-packages/mongoengine/document.py", line 407, in save
    self.ensure_indexes()
  File "/usr/local/lib/python3.7/site-packages/mongoengine/document.py", line 924, in ensure_indexes
    collection.create_index(fields, background=background, **opts)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 2059, in create_index
    return self.__create_indexes([index], session, **cmd_options)[0]
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 1953, in __create_indexes
    session=session)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 253, in _command
    user_fields=user_fields)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 699, in command
    self._raise_connection_failure(error)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 694, in command
    exhaust_allowed=exhaust_allowed)
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 150, in command
    reply = receive_message(sock_info, request_id)
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 195, in receive_message
    _receive_data_on_socket(sock_info, 16, deadline))
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 292, in _receive_data_on_socket
    raise AutoReconnect("connection closed")
pymongo.errors.AutoReconnect: connection closed
  • 19 entries (3 uploads) x parsers/vasp: 0LNWNHB6TFCaBMTxTCX1zw/3 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/base.py", line 790, in proc_task
    rv = unwrapped_func(proc, *args, **kwargs)
  File "/app/nomad/processing/data.py", line 951, in process_entry
    self.archiving()
  File "/app/nomad/processing/data.py", line 1070, in archiving
    self.set_last_status_message('Archiving')
  File "/app/nomad/processing/base.py", line 408, in set_last_status_message
    self.save()
  File "/usr/local/lib/python3.7/site-packages/mongoengine/document.py", line 407, in save
    self.ensure_indexes()
  File "/usr/local/lib/python3.7/site-packages/mongoengine/document.py", line 924, in ensure_indexes
    collection.create_index(fields, background=background, **opts)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 2059, in create_index
    return self.__create_indexes([index], session, **cmd_options)[0]
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 1953, in __create_indexes
    session=session)
  File "/usr/local/lib/python3.7/site-packages/pymongo/collection.py", line 253, in _command
    user_fields=user_fields)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 699, in command
    self._raise_connection_failure(error)
  File "/usr/local/lib/python3.7/site-packages/pymongo/pool.py", line 694, in command
    exhaust_allowed=exhaust_allowed)
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 150, in command
    reply = receive_message(sock_info, request_id)
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 195, in receive_message
    _receive_data_on_socket(sock_info, 16, deadline))
  File "/usr/local/lib/python3.7/site-packages/pymongo/network.py", line 292, in _receive_data_on_socket
    raise AutoReconnect("connection closed")
pymongo.errors.AutoReconnect: connection closed
  • 2756 entries (59 uploads) x parsers/phonopy: gALX4N-AQCy2ZtIx3Jf_ow/59 (v1), raw files (v0)
Traceback (most recent call last):
  File "/app/nomad/processing/data.py", line 2297, in _get_archive
    archive_dict = self.upload.upload_files.read_archive(entry_id)[entry_id].to_dict()
  File "/app/nomad/files.py", line 1384, in read_archive
    raise KeyError(entry_id)
KeyError: 'Hkc0d11dbp8IzOPW3TdAP6b118sw'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/lib/python3.7/site-packages/phonopyparser/phonopy_parser.py", line 379, in parse_ref
    archive = self.archive.m_context.resolve_archive(f'../upload/archive/mainfile/{path}')
  File "/app/nomad/processing/data.py", line 2326, in resolve_archive
    return self._get_archive(entry_id)
  File "/app/nomad/processing/data.py", line 2299, in _get_archive
    raise MetainfoReferenceError(f'archive does not exist {entry_id}')
nomad.metainfo.metainfo.MetainfoReferenceError: archive does not exist Hkc0d11dbp8IzOPW3TdAP6b118sw
Edited Jan 19, 2022 by Alvin Noe Ladines
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