Refactored the setup.py. Using compiled arguments from deps, layers of extras. Some import refactoring to make the extra layers work.

Increased symemtry tolerance to +/-0.1 angstrom (=symmemtry_threshold=0.2). This seems like a more reasonable threshold as relaxed structures may not follow symmetries so exactly. Added tests for bulk material identification.

Updated the AFLOW prototype data. The new data is stored within nomad-FAIR instead of using the one in nomadcore. Modified systemnormalizer to use this new data through the new structure.py module that is created for handling various structure-related tasks.

Added more comprehensive system type analysis that now can separate between surfaces and 2D materials.

Added structure information for 2D systems in EncyclopediaNormalizer, updated SystemNormalizer so that it does not try to fetch symemtry information for non-bulk systems, added improved system type detection from MatID to SystemNormalizer.

Modified the system type detection to use the full MatID detection mechanism that can better distinguish surfaces and 2D materials. Updated the system type detection to use config values.