diff --git a/requirements-dev.txt b/requirements-dev.txt index 61cb74cb1673e8772668b96f01f16462f4435b1d..98c6022be881899b81bf2d9e33d8f925b7171019 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -12,11 +12,11 @@ aniso8601==7.0.0 # via -r requirements.txt, nomad-lab (pyproject.toml) anyio==3.6.2 # via -r requirements.txt, httpcore, starlette, watchfiles arrow==1.2.3 # via -r requirements.txt, isoduration asciitree==0.3.3 # via -r requirements.txt, zarr -ase==3.19.0 # via -r requirements.txt, asr, ifes-apt-tc-data-modeling, nomad-lab (pyproject.toml), quippy-ase +ase==3.19.0 # via -r requirements.txt, asr, ifes-apt-tc-data-modeling, matid (dependencies/matid/pyproject.toml), quippy-ase asgiref==3.6.0 # via -r requirements.txt, nomad-lab (pyproject.toml) -asr==0.4.1 # via -r requirements.txt, nomad-lab (pyproject.toml) +asr==0.4.1 # via -r requirements.txt, workflowparsers (dependencies/parsers/workflow/pyproject.toml) asteval==0.9.31 # via -r requirements.txt, lmfit -astroid==2.11.7 # via nomad-lab (pyproject.toml), pylint +astroid==2.11.7 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml), pylint asttokens==2.1.0 # via devtools astunparse==1.6.3 # via -r requirements.txt, mdtraj async-generator==1.10 # via -r requirements.txt, jupyterhub @@ -31,19 +31,19 @@ bcrypt==3.2.0 # via -r requirements.txt, nomad-lab (pyproject.toml) beautifulsoup4==4.11.1 # via -r requirements.txt, bs4 billiard==3.6.4.0 # via -r requirements.txt, celery biopython==1.80 # via -r requirements.txt, mdanalysis -bitarray==2.3.5 # via -r requirements.txt, nomad-lab (pyproject.toml) +bitarray==2.3.5 # via -r requirements.txt, nomad-dos-fingerprints (dependencies/nomad-dos-fingerprints/pyproject.toml) bleach==5.0.1 # via readme-renderer bs4==0.0.1 # via -r requirements.txt, nomad-lab (pyproject.toml) build==0.9.0 # via nomad-lab (pyproject.toml), pip-tools cachetools==4.2.4 # via -r requirements.txt, nomad-lab (pyproject.toml) cattrs==22.2.0 # via -r requirements.txt, requests-cache -celery[redis]==5.2.7 # via -r requirements.txt, nomad-lab (pyproject.toml) +celery[redis]==5.2.7 # via -r requirements.txt, celery certifi==2022.12.7 # via -r requirements.txt, elasticsearch, httpcore, httpx, requests certipy==0.1.3 # via -r requirements.txt, jupyterhub cffi==1.15.1 # via -r requirements.txt, bcrypt, cryptography cftime==1.6.2 # via -r requirements.txt, netcdf4 charset-normalizer==2.0.12 # via -r requirements.txt, requests -click==8.1.3 # via -r requirements.txt, asr, celery, click-didyoumean, click-plugins, click-repl, flask, mkdocs, mkdocs-click, nomad-lab (pyproject.toml), pip-tools, uvicorn +click==8.1.3 # via -r requirements.txt, asr, celery, click-didyoumean, click-plugins, click-repl, flask, mkdocs, mkdocs-click, pip-tools, pynxtools (dependencies/parsers/nexus/pyproject.toml), uvicorn click-didyoumean==0.3.0 # via -r requirements.txt, celery click-plugins==1.1.1 # via -r requirements.txt, celery click-repl==0.2.0 # via -r requirements.txt, celery @@ -54,7 +54,7 @@ commonmark==0.9.1 # via -r requirements.txt, recommonmark coverage==6.5.0 # via pytest-cov cryptography==39.0.0 # via -r requirements.txt, nomad-lab (pyproject.toml), pyjwt, pyopenssl, rfc3161ng, secretstorage cycler==0.11.0 # via -r requirements.txt, matplotlib -dask[array]==2022.2.0 # via -r requirements.txt, hyperspy, kikuchipy, orix, pyxem +dask[array]==2022.2.0 # via -r requirements.txt, dask, hyperspy, kikuchipy, orix, pyxem debugpy==1.6.5 # via -r requirements.txt, ipykernel decorator==5.1.1 # via -r requirements.txt, ipyparallel, ipython, validators devtools==0.8.0 # via nomad-lab (pyproject.toml) @@ -91,14 +91,14 @@ fsspec==2022.11.0 # via -r requirements.txt, dask, hyperspy future==0.18.2 # via -r requirements.txt, uncertainties ghp-import==2.1.0 # via mkdocs gitdb==4.0.10 # via -r requirements.txt, gitpython -gitpython==3.1.24 # via -r requirements.txt, nomad-lab (pyproject.toml) +gitpython==3.1.24 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) greenlet==2.0.1 # via -r requirements.txt, sqlalchemy griddataformats==0.7.0 # via -r requirements.txt, mdanalysis gsd==2.7.0 # via -r requirements.txt, mdanalysis gunicorn==21.2.0 # via -r requirements.txt, nomad-lab (pyproject.toml) h11==0.14.0 # via -r requirements.txt, httpcore, uvicorn -h5grove[fastapi]==1.3.0 # via -r requirements.txt, nomad-lab (pyproject.toml) -h5py==3.6.0 # via -r requirements.txt, h5grove, hyperspy, ifes-apt-tc-data-modeling, kikuchipy, nionswift, nomad-lab (pyproject.toml), orix, phonopy, pyfai, silx +h5grove[fastapi]==1.3.0 # via -r requirements.txt, h5grove +h5py==3.6.0 # via -r requirements.txt, electronicparsers (dependencies/parsers/electronic/pyproject.toml), h5grove, hyperspy, ifes-apt-tc-data-modeling, kikuchipy, nionswift, orix, phonopy, pyfai, silx hjson==3.0.2 # via -r requirements.txt, nomad-lab (pyproject.toml) html5lib==1.1 # via -r requirements.txt, nomad-lab (pyproject.toml) httpcore==0.16.3 # via -r requirements.txt, httpx @@ -126,7 +126,7 @@ jinja2==3.0.3 # via -r requirements.txt, flask, hyperspy, jupyterhub jmespath==0.10.0 # via -r requirements.txt, nomad-lab (pyproject.toml) joblib==1.1.0 # via -r requirements.txt, mdanalysis, nomad-lab (pyproject.toml), scikit-learn jsonpointer==2.3 # via -r requirements.txt, jsonschema -jsonschema[format]==4.17.3 # via -r requirements.txt, jupyter-telemetry, nomad-lab (pyproject.toml), oauthenticator +jsonschema[format]==4.17.3 # via -r requirements.txt, jsonschema, jupyter-telemetry, oauthenticator jupyter-client==7.4.8 # via -r requirements.txt, ipykernel, ipyparallel jupyter-core==4.12.0 # via -r requirements.txt, jupyter-client jupyter-telemetry==0.1.0 # via -r requirements.txt, jupyterhub @@ -142,7 +142,7 @@ lazy-object-proxy==1.9.0 # via astroid llvmlite==0.39.1 # via -r requirements.txt, numba lmfit==1.2.2 # via -r requirements.txt, pyxem locket==1.0.0 # via -r requirements.txt, partd -lxml==4.7.1 # via -r requirements.txt, nomad-lab (pyproject.toml) +lxml==4.7.1 # via -r requirements.txt, atomisticparsers (dependencies/parsers/atomistic/pyproject.toml) m2r==0.2.1 # via -r requirements.txt, nomad-lab (pyproject.toml) mako==1.2.4 # via -r requirements.txt, alembic markdown==3.4.1 # via mkdocs, mkdocs-click, mkdocs-material, pymdown-extensions @@ -151,10 +151,10 @@ matplotlib==3.5.3 # via -r requirements.txt, ase, asr, diffsims, hypersp matplotlib-inline==0.1.6 # via -r requirements.txt, ipykernel, ipython matplotlib-scalebar==0.8.1 # via -r requirements.txt, orix mccabe==0.6.1 # via pylint -mdanalysis==2.5.0 # via -r requirements.txt, nomad-lab (pyproject.toml) +mdanalysis==2.5.0 # via -r requirements.txt, atomisticparsers (dependencies/parsers/atomistic/pyproject.toml) mdtraj==1.9.6 # via -r requirements.txt, nomad-lab (pyproject.toml) memoization==0.4.0 # via -r requirements.txt, nomad-lab (pyproject.toml) -mergedeep==1.3.4 # via mkdocs +mergedeep==1.3.4 # via mkdocs, pynxtools (dependencies/parsers/nexus/pyproject.toml) mistune==2.0.4 # via -r requirements.txt, m2r mkdocs==1.2.3 # via mkdocs-macros-plugin, mkdocs-material, mkdocs-redirects, nomad-lab (pyproject.toml) mkdocs-click==0.8.0 # via nomad-lab (pyproject.toml) @@ -171,13 +171,13 @@ mp-api==0.30.10 # via -r requirements.txt, pymatgen mpmath==1.2.1 # via -r requirements.txt, sympy mrcfile==1.4.3 # via -r requirements.txt, griddataformats msgpack==1.0.4 # via -r requirements.txt, mmtf-python, mp-api, nomad-lab (pyproject.toml) -mypy==1.0.1 # via nomad-lab (pyproject.toml), pynxtools (dependencies/parsers/nexus/pyproject.toml) +mypy==1.0.1 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml) mypy-extensions==0.4.3 # via mypy names==0.3.0 # via nomad-lab (pyproject.toml) -nanonispy @ git+https://github.com/ramav87/nanonispy.git@a0da87c58482d29624a2bf5deecb763dd1274212 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) +nanonispy @ git+https://github.com/ramav87/nanonispy.git@a0da87c58482d29624a2bf5deecb763dd1274212 # via -r requirements.txt natsort==8.2.0 # via -r requirements.txt, hyperspy nest-asyncio==1.5.6 # via -r requirements.txt, ipykernel, jupyter-client -netcdf4==1.5.4 # via -r requirements.txt, nomad-lab (pyproject.toml) +netcdf4==1.5.4 # via -r requirements.txt, electronicparsers (dependencies/parsers/electronic/pyproject.toml) networkx==2.6.3 # via -r requirements.txt, matid (dependencies/matid/pyproject.toml), mdanalysis, pymatgen, radioactivedecay, scikit-image niondata==0.15.5 # via -r requirements.txt, nionswift, nionswift-io nionswift==0.16.8 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) @@ -188,26 +188,26 @@ nptyping==1.4.4 # via -r requirements.txt, nomad-lab (pyproject.toml) numba==0.56.4 # via -r requirements.txt, diffsims, hyperspy, kikuchipy, orix, pyxem, sparse numcodecs==0.10.2 # via -r requirements.txt, zarr numexpr==2.8.4 # via -r requirements.txt, hyperspy, pyfai -numpy==1.22.4 # via -r requirements.txt, ase, biopython, cftime, dask, diffsims, f90wrap, fabio, griddataformats, gsd, h5grove, h5py, hyperspy, ifes-apt-tc-data-modeling, imageio, kikuchipy, lmfit, matplotlib, mdanalysis, mdtraj, mrcfile, nanonispy, netcdf4, niondata, nionswift, nionswift-io, nionui, nomad-lab (pyproject.toml), nptyping, numba, numcodecs, numexpr, numpy-quaternion, orix, pandas, phonopy, pyfai, pymatgen, pywavelets, pyxem, quippy-ase, radioactivedecay, scikit-image, scikit-learn, scipy, silx, sparse, spglib, tifffile, xarray, zarr +numpy==1.22.4 # via -r requirements.txt, ase, biopython, cftime, dask, diffsims, f90wrap, fabio, griddataformats, gsd, h5grove, h5py, hyperspy, ifes-apt-tc-data-modeling, imageio, kikuchipy, lmfit, matid (dependencies/matid/pyproject.toml), matplotlib, mdanalysis, mdtraj, mrcfile, nanonispy, netcdf4, niondata, nionswift, nionswift-io, nionui, nptyping, numba, numcodecs, numexpr, numpy-quaternion, orix, pandas, phonopy, pyfai, pymatgen, pywavelets, pyxem, quippy-ase, radioactivedecay, scikit-image, scikit-learn, scipy, silx, sparse, spglib, tifffile, xarray, zarr numpy-quaternion==2022.4.3 # via -r requirements.txt, orix oauthenticator==15.1.0 # via -r requirements.txt, nomad-lab (pyproject.toml) oauthlib==3.2.2 # via -r requirements.txt, jupyterhub openpyxl==3.1.2 # via -r requirements.txt, nomad-lab (pyproject.toml) -optimade[mongo]==0.22.1 # via -r requirements.txt, nomad-lab (pyproject.toml) +optimade[mongo]==0.22.1 # via -r requirements.txt, optimade orix==0.11.1 # via -r requirements.txt, diffsims, kikuchipy, pyxem orjson==3.9.4 # via -r requirements.txt, h5grove, nomad-lab (pyproject.toml) packaging==23.0 # via -r requirements.txt, build, dask, docker, gunicorn, hyperspy, ipykernel, matplotlib, mdanalysis, mkdocs, mongomock, pint, pooch, pytest, scikit-image, sphinx palettable==3.3.0 # via -r requirements.txt, pymatgen pamela==1.0.0 # via -r requirements.txt, jupyterhub -pandas==1.3.5 # via -r requirements.txt, ifes-apt-tc-data-modeling, nomad-lab (pyproject.toml), panedr, pymatgen, xarray -panedr==0.2 # via -r requirements.txt, nomad-lab (pyproject.toml) +pandas==1.3.5 # via -r requirements.txt, eelsdbconverter (dependencies/parsers/eelsdb/pyproject.toml), ifes-apt-tc-data-modeling, panedr, pymatgen, xarray +panedr==0.2 # via -r requirements.txt, atomisticparsers (dependencies/parsers/atomistic/pyproject.toml) parmed==3.0.0 # via -r requirements.txt, nomad-lab (pyproject.toml) parso==0.8.3 # via -r requirements.txt, jedi partd==1.3.0 # via -r requirements.txt, dask passlib==1.7.4 # via -r requirements.txt, nomad-lab (pyproject.toml) pep517==0.13.0 # via build pexpect==4.8.0 # via -r requirements.txt, ipython -phonopy==2.11.0 # via -r requirements.txt, asr, nomad-lab (pyproject.toml) +phonopy==2.11.0 # via -r requirements.txt, asr, workflowparsers (dependencies/parsers/workflow/pyproject.toml) pickleshare==0.7.5 # via -r requirements.txt, ipython pillow==9.4.0 # via -r requirements.txt, imageio, matplotlib, nionswift, scikit-image pint==0.17 # via -r requirements.txt, hyperspy, nomad-lab (pyproject.toml) @@ -227,25 +227,25 @@ pyasn1==0.4.8 # via -r requirements.txt, pyasn1-modules, python-jose pyasn1-modules==0.2.8 # via -r requirements.txt, rfc3161ng pybtex==0.24.0 # via -r requirements.txt, emmet-core, pymatgen pycifrw==4.4.5 # via -r requirements.txt, diffpy-structure -pycodestyle==2.8.0 # via nomad-lab (pyproject.toml), pynxtools (dependencies/parsers/nexus/pyproject.toml) +pycodestyle==2.8.0 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml) pycparser==2.21 # via -r requirements.txt, cffi pydantic==1.10.9 # via -r requirements.txt, emmet-core, fastapi, nomad-lab (pyproject.toml), optimade pyfai==2023.9.0 # via -r requirements.txt, pyxem pygments==2.14.0 # via -r requirements.txt, ipython, mkdocs-material, readme-renderer, sphinx -pyjwt[crypto]==2.6.0 # via -r requirements.txt, nomad-lab (pyproject.toml) -pylint==2.13.9 # via nomad-lab (pyproject.toml), pylint-mongoengine, pylint-plugin-utils, pynxtools (dependencies/parsers/nexus/pyproject.toml) +pyjwt[crypto]==2.6.0 # via -r requirements.txt, pyjwt +pylint==2.13.9 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml), pylint-mongoengine, pylint-plugin-utils pylint-mongoengine==0.4.0 # via nomad-lab (pyproject.toml) -pylint-plugin-utils==0.7 # via nomad-lab (pyproject.toml), pylint-mongoengine +pylint-plugin-utils==0.7 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml), pylint-mongoengine pymatgen==2023.2.28 # via -r requirements.txt, asr, emmet-core, mp-api, nomad-lab (pyproject.toml) pymdown-extensions==9.7 # via mkdocs-material pymongo==4.3.3 # via -r requirements.txt, mongoengine, nomad-lab (pyproject.toml), optimade pyopenssl==23.0.0 # via -r requirements.txt, certipy pyparsing==3.0.9 # via -r requirements.txt, matplotlib, mdtraj, rdflib pyrsistent==0.19.3 # via -r requirements.txt, jsonschema -pytest==5.4.3 # via nomad-lab (pyproject.toml), pynxtools (dependencies/parsers/nexus/pyproject.toml), pytest-cov, pytest-forked, pytest-timeout, pytest-xdist -pytest-cov==2.7.1 # via nomad-lab (pyproject.toml), pynxtools (dependencies/parsers/nexus/pyproject.toml) +pytest==5.4.3 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml), pytest-cov, pytest-forked, pytest-timeout, pytest-xdist +pytest-cov==2.7.1 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml) pytest-forked==1.6.0 # via pytest-xdist -pytest-timeout==1.4.2 # via nomad-lab (pyproject.toml), pynxtools (dependencies/parsers/nexus/pyproject.toml) +pytest-timeout==1.4.2 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml) pytest-xdist==1.34.0 # via nomad-lab (pyproject.toml) python-dateutil==2.8.2 # via -r requirements.txt, arrow, elasticsearch-dsl, ghp-import, hyperspy, ipyparallel, jupyter-client, jupyterhub, matplotlib, mkdocs-macros-plugin, pandas, rfc3161ng python-dotenv==0.21.0 # via -r requirements.txt, uvicorn @@ -256,11 +256,11 @@ python-keycloak==0.26.1 # via -r requirements.txt, nomad-lab (pyproject.toml) python-logstash==0.4.6 # via -r requirements.txt, nomad-lab (pyproject.toml) python-magic==0.4.24 # via -r requirements.txt, nomad-lab (pyproject.toml) python-multipart==0.0.5 # via -r requirements.txt, nomad-lab (pyproject.toml) -pytz==2022.7.1 # via -r requirements.txt, babel, celery, nionswift, nomad-lab (pyproject.toml), pandas +pytz==2022.7.1 # via -r requirements.txt, babel, celery, nionswift, pandas, pynxtools (dependencies/parsers/nexus/pyproject.toml) pytz-deprecation-shim==0.1.0.post0 # via -r requirements.txt, tzlocal pywavelets==1.3.0 # via -r requirements.txt, scikit-image pyxem==0.15.1 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) -pyyaml==6.0 # via -r requirements.txt, dask, hyperspy, kikuchipy, mkdocs, mkdocs-macros-plugin, nomad-lab (pyproject.toml), phonopy, pybtex, pyyaml-env-tag, uvicorn +pyyaml==6.0 # via -r requirements.txt, dask, electronicparsers (dependencies/parsers/electronic/pyproject.toml), hyperspy, kikuchipy, mkdocs, mkdocs-macros-plugin, phonopy, pybtex, pyyaml-env-tag, uvicorn pyyaml-env-tag==0.1 # via mkdocs pyzeo==0.1.4 # via -r requirements.txt, nomad-lab (pyproject.toml) pyzmq==25.0.0 # via -r requirements.txt, ipykernel, ipyparallel, jupyter-client @@ -270,22 +270,22 @@ rdflib==5.0.0 # via -r requirements.txt, nomad-lab (pyproject.toml) readme-renderer==37.3 # via twine recommonmark==0.7.1 # via -r requirements.txt, nomad-lab (pyproject.toml) redis==4.4.2 # via -r requirements.txt, celery -requests==2.28.2 # via -r requirements.txt, docker, hyperspy, jupyterhub, mp-api, nomad-lab (pyproject.toml), oauthenticator, optimade, pooch, pymatgen, python-gitlab, python-keycloak, requests-cache, requests-toolbelt, rfc3161ng, sphinx, twine +requests==2.28.2 # via -r requirements.txt, docker, eelsdbconverter (dependencies/parsers/eelsdb/pyproject.toml), hyperspy, jupyterhub, mp-api, oauthenticator, optimade, pooch, pymatgen, python-gitlab, python-keycloak, requests-cache, requests-toolbelt, rfc3161ng, sphinx, twine requests-cache==1.0.1 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) requests-toolbelt==0.10.1 # via python-gitlab, twine rfc3161ng==2.1.3 # via -r requirements.txt, nomad-lab (pyproject.toml) rfc3339-validator==0.1.4 # via -r requirements.txt, jsonschema -rfc3986[idna2008]==1.5.0 # via -r requirements.txt, httpx, twine +rfc3986[idna2008]==1.5.0 # via -r requirements.txt, httpx, rfc3986, twine rfc3987==1.3.8 # via -r requirements.txt, jsonschema rope==0.21.0 # via nomad-lab (pyproject.toml) rsa==4.9 # via -r requirements.txt, python-jose ruamel-yaml==0.17.21 # via -r requirements.txt, jupyter-telemetry, oauthenticator, pymatgen ruamel-yaml-clib==0.2.7 # via -r requirements.txt, ruamel-yaml -ruff==0.1.4 # via nomad-lab (pyproject.toml) +ruff==0.1.4 # via atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), nomad-lab (pyproject.toml) runstats==2.0.0 # via -r requirements.txt, nomad-lab (pyproject.toml) scikit-image==0.19.3 # via -r requirements.txt, hyperspy, kikuchipy, pyxem -scikit-learn==1.0.2 # via -r requirements.txt, kikuchipy, nomad-lab (pyproject.toml), pyxem -scipy==1.7.1 # via -r requirements.txt, ase, diffsims, griddataformats, hyperspy, kikuchipy, lmfit, mdanalysis, mdtraj, niondata, nionswift, nomad-lab (pyproject.toml), orix, pyfai, pymatgen, pyxem, radioactivedecay, scikit-image, scikit-learn, sparse +scikit-learn==1.0.2 # via -r requirements.txt, kikuchipy, matid (dependencies/matid/pyproject.toml), pyxem +scipy==1.7.1 # via -r requirements.txt, ase, diffsims, griddataformats, hyperspy, kikuchipy, lmfit, matid (dependencies/matid/pyproject.toml), mdanalysis, mdtraj, niondata, nionswift, orix, pyfai, pymatgen, pyxem, radioactivedecay, scikit-image, scikit-learn, sparse secretstorage==3.3.3 # via keyring sentinels==1.0.0 # via -r requirements.txt, mongomock silx==1.1.2 # via -r requirements.txt, pyfai @@ -305,7 +305,7 @@ sphinxcontrib-qthelp==1.0.3 # via -r requirements.txt, sphinx sphinxcontrib-serializinghtml==1.1.5 # via -r requirements.txt, sphinx sqlalchemy==1.4.46 # via -r requirements.txt, alembic, jupyterhub starlette==0.25.0 # via -r requirements.txt, fastapi -structlog==22.3.0 # via -r requirements.txt, nomad-lab (pyproject.toml) +structlog==22.3.0 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) sympy==1.10.1 # via -r requirements.txt, hyperspy, pymatgen, radioactivedecay tabulate==0.8.9 # via -r requirements.txt, nomad-lab (pyproject.toml), pymatgen tenacity==8.1.0 # via -r requirements.txt, plotly @@ -326,7 +326,7 @@ types-pytz==2022.7.0.0 # via pynxtools (dependencies/parsers/nexus/pyproject. types-pyyaml==6.0.12.1 # via pynxtools (dependencies/parsers/nexus/pyproject.toml) types-requests==2.28.11.16 # via pynxtools (dependencies/parsers/nexus/pyproject.toml) types-urllib3==1.26.25.8 # via types-requests -typing-extensions==4.4.0 # via -r requirements.txt, astroid, emmet-core, gitpython, mp-api, mypy, numcodecs, pydantic, pylint, starlette +typing-extensions==4.4.0 # via -r requirements.txt, astroid, atomisticparsers (dependencies/parsers/atomistic/pyproject.toml), emmet-core, gitpython, mp-api, mypy, numcodecs, pydantic, pylint, starlette typish==1.9.3 # via -r requirements.txt, nptyping tzdata==2023.3 # via -r requirements.txt, pytz-deprecation-shim tzlocal==4.3 # via -r requirements.txt, nionswift, pynxtools (dependencies/parsers/nexus/pyproject.toml) @@ -335,7 +335,7 @@ unidecode==1.3.2 # via -r requirements.txt, nomad-lab (pyproject.toml) uri-template==1.2.0 # via -r requirements.txt, jsonschema url-normalize==1.4.3 # via -r requirements.txt, requests-cache urllib3==1.26.14 # via -r requirements.txt, docker, elasticsearch, requests, requests-cache -uvicorn[standard]==0.20.0 # via -r requirements.txt, h5grove, nomad-lab (pyproject.toml) +uvicorn[standard]==0.20.0 # via -r requirements.txt, h5grove, uvicorn uvloop==0.17.0 # via -r requirements.txt, uvicorn validators==0.18.2 # via -r requirements.txt, nomad-lab (pyproject.toml) vine==5.0.0 # via -r requirements.txt, amqp, celery, kombu @@ -350,7 +350,7 @@ werkzeug==2.2.2 # via -r requirements.txt, flask wheel==0.38.4 # via -r requirements.txt, astunparse, pip-tools widgetsnbextension==4.0.9 # via -r requirements.txt, ipywidgets wrapt==1.12.1 # via -r requirements.txt, astroid, nomad-lab (pyproject.toml) -xarray==0.20.2 # via -r requirements.txt, nomad-lab (pyproject.toml) +xarray==0.20.2 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) zarr==2.12.0 # via -r requirements.txt, hyperspy zipfile37==0.1.3 # via -r requirements.txt, pynxtools (dependencies/parsers/nexus/pyproject.toml) zipp==3.11.0 # via -r requirements.txt, importlib-metadata