diff --git a/nomad/api/archive.py b/nomad/api/archive.py index 8f4776f0d93865aeadb80c8c625f6b26fc5eeee1..560db23d8251816c136c4ca4f360711306d49f98 100644 --- a/nomad/api/archive.py +++ b/nomad/api/archive.py @@ -24,7 +24,7 @@ from flask_restplus import abort, Resource import nomad_meta_info -from nomad.uploads import UploadFiles, Restricted +from nomad.files import UploadFiles, Restricted from .app import api from .auth import login_if_available, create_authorization_predicate diff --git a/nomad/api/auth.py b/nomad/api/auth.py index 3c13aba9084b3dd429e160fd00c23cefb94c35a2..74c5a4577faa7ac5abe3b18d502f883a581c3ead 100644 --- a/nomad/api/auth.py +++ b/nomad/api/auth.py @@ -39,7 +39,7 @@ from flask import g, request, make_response from flask_restplus import abort, Resource from flask_httpauth import HTTPBasicAuth -from nomad import config, processing, uploads, utils, coe_repo +from nomad import config, processing, files, utils, coe_repo from nomad.coe_repo import User, LoginException from .app import app, api @@ -170,7 +170,7 @@ def create_authorization_predicate(upload_hash, calc_hash=None): return str(g.user.user_id) == str(staging_upload.user_id) # There are no db entries for the given resource - if uploads.UploadFiles.get(upload_hash) is not None: + if files.UploadFiles.get(upload_hash) is not None: logger = utils.get_logger(__name__, upload_hash=upload_hash, calc_hash=calc_hash) logger.error('Upload files without respective db entry') diff --git a/nomad/api/raw.py b/nomad/api/raw.py index a30ea954e30c1396711a83b1699dacce87f3c8e1..1a8b8e3a3fc3e8401ef22b36841eedb11f3d5509 100644 --- a/nomad/api/raw.py +++ b/nomad/api/raw.py @@ -23,7 +23,7 @@ import zipstream from flask import Response, request, send_file, stream_with_context from flask_restplus import abort, Resource, fields -from nomad.uploads import UploadFiles, Restricted +from nomad.files import UploadFiles, Restricted from .app import api from .auth import login_if_available, create_authorization_predicate diff --git a/nomad/api/upload.py b/nomad/api/upload.py index 915ba2c271c56ffff24f0a61cf5e15a8db0666ae..a63ce5f86684870c9c9cb64055629f750bf803fb 100644 --- a/nomad/api/upload.py +++ b/nomad/api/upload.py @@ -26,7 +26,7 @@ import os.path from nomad import config, utils from nomad.processing import Upload from nomad.processing import NotAllowedDuringProcessing -from nomad.uploads import ArchiveBasedStagingUploadFiles, StagingUploadFiles, UploadFiles +from nomad.files import ArchiveBasedStagingUploadFiles, StagingUploadFiles, UploadFiles from .app import api, with_logger from .auth import login_really_required diff --git a/nomad/client.py b/nomad/client.py index 358326e9322af4d38e661343892442d6abbad76e..d8e436864753d5daf1903fae3793fd33ee1910bf 100644 --- a/nomad/client.py +++ b/nomad/client.py @@ -28,7 +28,7 @@ from bravado.requests_client import RequestsClient from bravado.client import SwaggerClient from nomad import config, utils -from nomad.uploads import ArchiveBasedStagingUploadFiles +from nomad.files import ArchiveBasedStagingUploadFiles from nomad.parsing import parsers, parser_dict, LocalBackend from nomad.normalizing import normalizers diff --git a/nomad/datamodel.py b/nomad/datamodel.py index 009a6cf5d966aaee3bc80bcb087c024c7dbe194f..2494114e698e6845313c5f60128793976854d088 100644 --- a/nomad/datamodel.py +++ b/nomad/datamodel.py @@ -16,7 +16,7 @@ This module contains classes that allow to represent the core nomad data entities :class:`Upload` and :class:`Calc` on a high level of abstraction independent from their representation in the different modules :py:mod:`nomad.repo`, -:py:mod:`nomad.processing`, :py:mod:`nomad.coe_repo`, :py:mod:`nomad.uploads`. +:py:mod:`nomad.processing`, :py:mod:`nomad.coe_repo`, :py:mod:`nomad.files`. It is not about representing every detail, but those parts that are directly involved in api, processing, migration, mirroring, or other 'infrastructure' operations. """ diff --git a/nomad/uploads.py b/nomad/files.py similarity index 100% rename from nomad/uploads.py rename to nomad/files.py diff --git a/nomad/processing/data.py b/nomad/processing/data.py index 15df76ea7e7ac0032a2ce00131277494e09e1b30..552a87d9751dea3a90866e52499e4124870a1e06 100644 --- a/nomad/processing/data.py +++ b/nomad/processing/data.py @@ -31,7 +31,7 @@ from structlog import wrap_logger from contextlib import contextmanager from nomad import utils, coe_repo, datamodel -from nomad.uploads import PathObject, ArchiveBasedStagingUploadFiles +from nomad.files import PathObject, ArchiveBasedStagingUploadFiles from nomad.repo import RepoCalc, RepoUpload from nomad.processing.base import Proc, Chord, process, task, PENDING, SUCCESS, FAILURE from nomad.parsing import parsers, parser_dict diff --git a/tests/processing/test_data.py b/tests/processing/test_data.py index 41e3d21cc5db0b6a1f8c68c4076b05e49033872c..a9cd15ad6e14966755eb35c752554ea900a39fa8 100644 --- a/tests/processing/test_data.py +++ b/tests/processing/test_data.py @@ -26,15 +26,15 @@ import os.path import json from nomad import utils -from nomad.uploads import ArchiveBasedStagingUploadFiles, UploadFiles, StagingUploadFiles +from nomad.files import ArchiveBasedStagingUploadFiles, UploadFiles, StagingUploadFiles from nomad.processing import Upload, Calc from nomad.processing.base import task as task_decorator from nomad.repo import RepoUpload -from tests.test_uploads import example_file, empty_file +from tests.test_files import example_file, empty_file # import fixtures -from tests.test_uploads import clear_files # pylint: disable=unused-import +from tests.test_files import clear_files # pylint: disable=unused-import example_files = [empty_file, example_file] diff --git a/tests/test_api.py b/tests/test_api.py index a5bc8993a2c46e0e58c9bdc8f450c20cff7f3531..f5ed12c5e864c13458b13eb389874bae1476ae8d 100644 --- a/tests/test_api.py +++ b/tests/test_api.py @@ -29,13 +29,13 @@ services_config.update(api_base_path='') config.services = config.NomadServicesConfig(**services_config) from nomad import api, coe_repo # noqa -from nomad.uploads import UploadFiles, PublicUploadFiles # noqa +from nomad.files import UploadFiles, PublicUploadFiles # noqa from nomad.processing import Upload, Calc # noqa from nomad.coe_repo import User # noqa from tests.processing.test_data import example_files # noqa -from tests.test_uploads import example_file, example_file_mainfile, example_file_contents # noqa -from tests.test_uploads import create_staging_upload, create_public_upload # noqa +from tests.test_files import example_file, example_file_mainfile, example_file_contents # noqa +from tests.test_files import create_staging_upload, create_public_upload # noqa # import fixtures from tests.test_normalizing import normalized_template_example # noqa pylint: disable=unused-import diff --git a/tests/test_coe_repo.py b/tests/test_coe_repo.py index 5f6f415daf8efb61fefe901f13760853ec2ab7fb..3b50188a8d1b7ce5b7488ffa4215bb4a6b4c011e 100644 --- a/tests/test_coe_repo.py +++ b/tests/test_coe_repo.py @@ -20,7 +20,7 @@ from nomad.coe_repo import User, Calc, Upload from tests.processing.test_data import processed_upload # pylint: disable=unused-import from tests.processing.test_data import uploaded_id # pylint: disable=unused-import from tests.processing.test_data import mocks_forall # pylint: disable=unused-import -from tests.test_uploads import clear_files # pylint: disable=unused-import +from tests.test_files import clear_files # pylint: disable=unused-import def assert_user(user, reference): diff --git a/tests/test_uploads.py b/tests/test_files.py similarity index 98% rename from tests/test_uploads.py rename to tests/test_files.py index 33d797427962cf3ba972fb0454d47e22e4265cc9..dfdc6536722453f8bf6d68a0de08fe1e7a02de8b 100644 --- a/tests/test_uploads.py +++ b/tests/test_files.py @@ -20,9 +20,9 @@ import pytest import json from nomad import config -from nomad.uploads import DirectoryObject, PathObject -from nomad.uploads import Metadata, MetadataTimeout, PublicMetadata, StagingMetadata -from nomad.uploads import StagingUploadFiles, PublicUploadFiles, UploadFiles, Restricted, \ +from nomad.files import DirectoryObject, PathObject +from nomad.files import Metadata, MetadataTimeout, PublicMetadata, StagingMetadata +from nomad.files import StagingUploadFiles, PublicUploadFiles, UploadFiles, Restricted, \ ArchiveBasedStagingUploadFiles diff --git a/tests/test_repo.py b/tests/test_repo.py index 2a47a163e1367d92404e634460eb99b134263f1a..d13ad56f86edb200748c7426b942b5f35b6c7958 100644 --- a/tests/test_repo.py +++ b/tests/test_repo.py @@ -20,7 +20,7 @@ # from nomad.parsing import LocalBackend # from nomad.repo import AlreadyExists, RepoCalc -# from tests.test_uploads import example_file # noqa +# from tests.test_files import example_file # noqa # from tests.test_normalizing import normalized_template_example # pylint: disable=unused-import # from tests.test_parsing import parsed_template_example # pylint: disable=unused-import diff --git a/tests_integration/test_client.py b/tests_integration/test_client.py index ae78b90135761049f3b76abca7d26c923f2c4b8f..da37982081adb5411b860f1c6d770c3f17be1e64 100644 --- a/tests_integration/test_client.py +++ b/tests_integration/test_client.py @@ -16,7 +16,7 @@ import pytest from nomad.client import create_client, upload_file -from tests.test_uploads import example_file +from tests.test_files import example_file @pytest.fixture(scope='session')