From c90a70204e7743a5d59cddcfc3b820f3ac3c019c Mon Sep 17 00:00:00 2001
From: Theodore Chang <theodore.chang@physik.hu-berlin.de>
Date: Wed, 2 Oct 2024 14:26:04 +0000
Subject: [PATCH] Resolve "Some of the example archive cannot be parsed
anymore"
---
nomad/datamodel/datamodel.py | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/nomad/datamodel/datamodel.py b/nomad/datamodel/datamodel.py
index 69b1e773fe..ebbaa47736 100644
--- a/nomad/datamodel/datamodel.py
+++ b/nomad/datamodel/datamodel.py
@@ -70,6 +70,25 @@ except Exception:
run_def = None
+has_mongo = False
+
+logger = utils.get_logger(__name__)
+
+
+def _check_mongo_connection():
+ from nomad.infrastructure import mongo_client
+
+ global has_mongo
+ if has_mongo or mongo_client is None:
+ return
+
+ try:
+ mongo_client.server_info()
+ has_mongo = True
+ except Exception as e:
+ logger.warning('MongoDB connection failed.', exc_info=e)
+
+
class AuthLevel(int, Enum):
"""
Used to decorate fields with the authorization level required to edit them (using `a_auth_level`).
@@ -922,6 +941,8 @@ class EntryMetadata(MSection):
search_quantities = []
keywords_set = set()
+ _check_mongo_connection()
+
def get_section_path(section):
section_path = section_paths.get(section)
if section_path is None:
@@ -1001,6 +1022,9 @@ class EntryMetadata(MSection):
Receives a definition of a quantity 'current_def' and checks if it is a reference to another entry.
If yes, add the value to 'ref_pool'.
"""
+ if not has_mongo:
+ return
+
if isinstance(current_def, Quantity):
# for quantities
if not isinstance(current_def.type, Reference):
--
GitLab