Moved more parsers to github.

.gitmodules

@@ -4,24 +4,24 @@
 	branch = nomad-fair
 [submodule "dependencies/parsers/vasp"]
 	path = dependencies/parsers/vasp
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-vasp.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-vasp.git
+	branch = master
 [submodule "dependencies/parsers/exciting"]
 	path = dependencies/parsers/exciting
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-exciting-fairdi.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-exciting.git
+	branch = master
 [submodule "dependencies/parsers/fhi-aims"]
 	path = dependencies/parsers/fhi-aims
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-fhi-aims.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-fhi-aims.git
+	branch = master
 [submodule "dependencies/parsers/cp2k"]
 	path = dependencies/parsers/cp2k
 	url = https://github.com/nomad-coe/nomad-parser-cp2k.git
 	branch = master
 [submodule "dependencies/parsers/crystal"]
 	path = dependencies/parsers/crystal
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-crystal.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-crystal.git
+	branch = master
 [submodule "dependencies/parsers/cpmd"]
 	path = dependencies/parsers/cpmd
 	url = https://github.com/nomad-coe/nomad-parser-cpmd.git
@@ -52,8 +52,8 @@
 	branch = nomad-fair
 [submodule "dependencies/parsers/abinit"]
 	path = dependencies/parsers/abinit
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-abinit.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-abinit.git
+	branch = master
 [submodule "dependencies/parsers/orca"]
 	path = dependencies/parsers/orca
 	url = https://github.com/nomad-coe/nomad-parser-orca.git
@@ -100,8 +100,8 @@
 	branch = master
 [submodule "dependencies/parsers/elastic"]
 	path = dependencies/parsers/elastic
-	url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-elastic.git
-	branch = nomad-fair
+	url = https://github.com/nomad-coe/nomad-parser-elastic.git
+	branch = master
 [submodule "dependencies/parsers/gamess"]
 	path = dependencies/parsers/gamess
 	url = https://github.com/nomad-coe/nomad-parser-gamess.git
@@ -175,14 +175,16 @@
 	branch = master
 [submodule "dependencies/parsers/gromacs"]
     path = dependencies/parsers/gromacs
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-gromacs.git
+	url = https://github.com/nomad-coe/nomad-parser-gromacs.git
+	branch = master
 [submodule "dependencies/parsers/gromos"]
     path = dependencies/parsers/gromos
 	url = https://github.com/nomad-coe/nomad-parser-gromos.git
 	branch = master
 [submodule "dependencies/parsers/lammps"]
     path = dependencies/parsers/lammps
-    url = https://gitlab.mpcdf.mpg.de/nomad-lab/parser-lammps.git
+	url = https://github.com/nomad-coe/nomad-parser-lammps.git
+	branch = master
 [submodule "dependencies/parsers/openkim"]
     path = dependencies/parsers/openkim
 	url = https://github.com/nomad-coe/nomad-parser-openkim.git

abinit @ b6b97154

-Subproject commit 52ac697cac040c7d37e960a5b529f8bc00c49f39
+Subproject commit b6b9715460a414af4af433bc44a832c97319080f

crystal @ 6dfe3236

-Subproject commit 8b0945be756a705daf48f225f7c821f2eecc631a
+Subproject commit 6dfe32362b392808399fb9eba1853d522b8956bf

elastic @ d43d7cb5

-Subproject commit 6c8d32cd0107b0cfda9890c82240d5309c568e1f
+Subproject commit d43d7cb50682679728f7280be309976feb4353be

exciting @ 44d5861d

-Subproject commit 18a179b508a89cfe2074d634e70448c6c5d27f2b
+Subproject commit 44d5861d0503976714ce1a1e09bac2aa3495ddf9

fhi-aims @ 139ab4a5

-Subproject commit 956c915fe6e789103a6f793fd81d817283c93d0d
+Subproject commit 139ab4a5e288542f4343db3419597fdeddbde3f4

gromacs @ bf2182de

-Subproject commit 2325478e13a622a04642519d9a69f0da5eaa5e65
+Subproject commit bf2182de246d0b63866e8a61b94392afb8b78073

lammps @ 6ff8642f

-Subproject commit 261655c3aa762ba6b2066c32e51303db48d5f4d7
+Subproject commit 6ff8642f195b4eab1f6284d51f455348763602b6

vasp @ 6ebe206c

-Subproject commit b6b2b661b29e363c41428a27ede19dcde77f63c9
+Subproject commit 6ebe206cb99f5bdf008f81f7bc8e4e434414460d

ops/scripts/submodules/__init__.py

@@ -74,7 +74,7 @@ def move_submodule_to_github(path: str):
 
     origin = re.split(r'\t| ', origin)[1]
     if 'github.com/nomad-coe' in origin:
-        print(f'Skip {path}. It already has GitHUB origin {origin}.')
+        # print(f'Skip {path}. It already has GitHUB origin {origin}.')
         return
 
     print(f'Moving {path} now.')
@@ -171,13 +171,14 @@ def move_submodule_to_github(path: str):
 
 
 def run_move_submodules_to_github():
-    working_dir = os.curdir
+    working_dir = os.path.abspath(os.curdir)
 
     parser_submodules = sys.argv[1:]
 
-    # if len(parser_submodules) == 0:
-    #     parser_submodules = collect_submodules(filter=r'parsers')
+    if len(parser_submodules) == 0:
+        parser_submodules = [path for path, _ in collect_submodules(filter=r'parsers')]
 
+    print(parser_submodules)
     for submodule in parser_submodules:
         path = submodule
         os.chdir(path)