From 77c64893035051d8c14595f2f744f892c4c63b66 Mon Sep 17 00:00:00 2001 From: Thomas <purcell@fhi-berlin.mpg.de> Date: Sun, 8 Aug 2021 18:52:36 +0200 Subject: [PATCH] Update python library DocStrings Set up for the python API --- src/descriptor_identifier/Model/Model.hpp | 8 +- .../Model/ModelClassifier.hpp | 6 +- .../Model/ModelLogRegressor.hpp | 4 +- .../Model/ModelRegressor.hpp | 4 +- .../SISSO_DI/SISSOClassifier.hpp | 1 + .../SISSO_DI/SISSOLogRegressor.hpp | 1 + .../SISSO_DI/SISSORegressor.hpp | 2 + .../feature_space/FeatureSpace.hpp | 8 - src/feature_creation/node/FeatureNode.hpp | 4 + src/feature_creation/node/ModelNode.hpp | 13 +- src/feature_creation/node/Node.hpp | 3 +- .../node/operator_nodes/OperatorNode.hpp | 14 +- .../abs/absolute_value.hpp | 1 + .../abs/parameterized_absolute_value.hpp | 1 + .../abs_diff/absolute_difference.hpp | 1 + .../parameterized_absolute_difference.hpp | 1 + .../allowed_operator_nodes/add/add.hpp | 1 + .../add/parameterized_add.hpp | 1 + .../allowed_operator_nodes/cb/cube.hpp | 1 + .../cb/parameterized_cube.hpp | 1 + .../allowed_operator_nodes/cbrt/cube_root.hpp | 1 + .../cbrt/parameterized_cube_root.hpp | 1 + .../allowed_operator_nodes/cos/cos.hpp | 1 + .../cos/parameterized_cos.hpp | 1 + .../allowed_operator_nodes/div/divide.hpp | 1 + .../div/parameterized_divide.hpp | 1 + .../exp/exponential.hpp | 1 + .../allowed_operator_nodes/inv/inverse.hpp | 1 + .../inv/parameterized_inverse.hpp | 1 + .../allowed_operator_nodes/log/log.hpp | 1 + .../log/parameterized_log.hpp | 1 + .../allowed_operator_nodes/mult/multiply.hpp | 1 + .../mult/parameterized_multiply.hpp | 1 + .../neg_exp/negative_exponential.hpp | 1 + .../parameterized_negative_exponential.hpp | 1 + .../sin/parameterized_sin.hpp | 1 + .../allowed_operator_nodes/sin/sin.hpp | 1 + .../six_pow/parameterized_sixth_power.hpp | 1 + .../six_pow/sixth_power.hpp | 1 + .../sq/parameterized_square.hpp | 1 + .../allowed_operator_nodes/sq/square.hpp | 1 + .../sqrt/parameterized_square_root.hpp | 1 + .../sqrt/square_root.hpp | 1 + .../sub/parameterized_subtract.hpp | 4 +- .../allowed_operator_nodes/sub/subtract.hpp | 1 + .../value_storage/nodes_value_containers.cpp | 4 - .../value_storage/nodes_value_containers.hpp | 63 ++- src/feature_creation/units/Unit.hpp | 1 + src/python/__init__.py | 6 +- src/python/_sisso.cpp | 2 +- src/python/bindings_docstring_keyed.cpp | 457 ++++++++++++------ src/python/bindings_docstring_keyed.hpp | 15 +- src/python/feature_creation/FeatureSpace.cpp | 12 +- src/python/feature_creation/node_utils.hpp | 1 + src/utils/string_utils.hpp | 1 + 55 files changed, 457 insertions(+), 209 deletions(-) diff --git a/src/descriptor_identifier/Model/Model.hpp b/src/descriptor_identifier/Model/Model.hpp index 957aae05..6baccab7 100644 --- a/src/descriptor_identifier/Model/Model.hpp +++ b/src/descriptor_identifier/Model/Model.hpp @@ -304,6 +304,7 @@ public: */ virtual std::string matlab_expr() const = 0; + // DocString: model_to_matlab /** * @brief Convert the model into a Matlab function * @@ -444,6 +445,7 @@ public: */ inline py::list leave_out_inds(){return python_conv_utils::to_list<int>(_leave_out_inds);} + // DocString: model_eval_arr /** * @brief Evaluate the model for a new point * @@ -452,6 +454,7 @@ public: */ inline double eval_py(np::ndarray x_in) const {return eval(python_conv_utils::from_ndarray<double>(x_in));} + // DocString: model_eval_list /** * @brief Evaluate the model for a new point * @@ -460,14 +463,16 @@ public: */ inline double eval_py(py::list x_in) const {return eval(python_conv_utils::from_list<double>(x_in));} + // DocString: model_eval_dict /** * @brief Evaluate the model for a new point * - * @param x_in_dct Dictionary describing the new point ("feature expr": value) + * @param x_in_dct Dictionary describing the new point (\"feature expr\": value) * @return The prediction of the model for a given data point */ inline double eval_py(py::dict x_in) const {return eval(python_conv_utils::from_dict<std::string, double>(x_in));} + // DocString: model_eval_many_arr /** * @brief Evaluate the model for a set of new points * @@ -476,6 +481,7 @@ public: */ np::ndarray eval_many_py(np::ndarray x_in) const ; + // DocString: model_eval_many_dict /** * @brief Evaluate the model for a set of new points * diff --git a/src/descriptor_identifier/Model/ModelClassifier.hpp b/src/descriptor_identifier/Model/ModelClassifier.hpp index df7cbb23..61803522 100644 --- a/src/descriptor_identifier/Model/ModelClassifier.hpp +++ b/src/descriptor_identifier/Model/ModelClassifier.hpp @@ -53,7 +53,7 @@ public: const std::vector<int> leave_out_inds ); - // DocString: model_class_init_str + // DocString: model_class_init_train /** * @brief Construct a model from a training output file * @details Reads in all of the data from the output file and recreates the model object @@ -62,7 +62,7 @@ public: */ ModelClassifier(const std::string train_file); - // DocString: model_class_init_str_str + // DocString: model_class_init_test_train /** * @brief Construct a model from a training and testing output file * @details Reads in all of the data from the output files and recreates the model object @@ -243,6 +243,7 @@ public: } #ifdef PY_BINDINGS + // DocString: model_class_init_new_coefs_list /** * @brief Construct a new Model with updated coefficient * @details Copy a model but update its coefficients @@ -254,6 +255,7 @@ public: */ ModelClassifier(const ModelClassifier& o, py::list new_coefs, np::ndarray prop_train_est, np::ndarray prop_test_est); + // DocString: model_class_init_new_coefs_arr /** * @brief Construct a new Model with updated coefficient * @details Copy a model but update its coefficients diff --git a/src/descriptor_identifier/Model/ModelLogRegressor.hpp b/src/descriptor_identifier/Model/ModelLogRegressor.hpp index 25b1a5c4..ffd552bd 100644 --- a/src/descriptor_identifier/Model/ModelLogRegressor.hpp +++ b/src/descriptor_identifier/Model/ModelLogRegressor.hpp @@ -52,7 +52,7 @@ public: const std::vector<int> leave_out_inds ); - // DocString: model_log_reg_init_str + // DocString: model_log_reg_init_train /** * @brief Construct a model from a training output file * @details Reads in all of the data from the output file and recreates the model object @@ -61,7 +61,7 @@ public: */ ModelLogRegressor(std::string train_file); - // DocString: model_log_reg_init_str_str + // DocString: model_log_reg_init_test_train /** * @brief Construct a model from a training and testing output file * @details Reads in all of the data from the output files and recreates the model object diff --git a/src/descriptor_identifier/Model/ModelRegressor.hpp b/src/descriptor_identifier/Model/ModelRegressor.hpp index fa30b57f..658f761d 100644 --- a/src/descriptor_identifier/Model/ModelRegressor.hpp +++ b/src/descriptor_identifier/Model/ModelRegressor.hpp @@ -51,7 +51,7 @@ public: const std::vector<int> leave_out_inds ); - // DocString: model_reg_init_str + // DocString: model_reg_init_train /** * @brief Construct a model from a training output file * @details Reads in all of the data from the output file and recreates the model object @@ -60,7 +60,7 @@ public: */ ModelRegressor(const std::string train_file); - // DocString: model_reg_init_str_str + // DocString: model_reg_init_test_train /** * @brief Construct a model from a training and testing output file * @details Reads in all of the data from the output files and recreates the model object diff --git a/src/descriptor_identifier/SISSO_DI/SISSOClassifier.hpp b/src/descriptor_identifier/SISSO_DI/SISSOClassifier.hpp index 55d2dafb..57786092 100644 --- a/src/descriptor_identifier/SISSO_DI/SISSOClassifier.hpp +++ b/src/descriptor_identifier/SISSO_DI/SISSOClassifier.hpp @@ -119,6 +119,7 @@ public: // Python interface functions #ifdef PY_BINDINGS + // DocString: sisso_class_init_arr /** * @brief Constructor for the Classifier that takes in python objects (cpp definition in <python/descriptor_identifier/SISSOClassifier.cpp) * diff --git a/src/descriptor_identifier/SISSO_DI/SISSOLogRegressor.hpp b/src/descriptor_identifier/SISSO_DI/SISSOLogRegressor.hpp index f77fdbaa..61c31ff4 100644 --- a/src/descriptor_identifier/SISSO_DI/SISSOLogRegressor.hpp +++ b/src/descriptor_identifier/SISSO_DI/SISSOLogRegressor.hpp @@ -87,6 +87,7 @@ public: // Python interface functions #ifdef PY_BINDINGS + // DocString: sisso_log_reg_init_arr /** * @brief Constructor for the Regressor that takes in python objects (cpp definition in <python/descriptor_identifier/SISSOLogRegressor.cpp) * diff --git a/src/descriptor_identifier/SISSO_DI/SISSORegressor.hpp b/src/descriptor_identifier/SISSO_DI/SISSORegressor.hpp index db07047a..c76a6115 100644 --- a/src/descriptor_identifier/SISSO_DI/SISSORegressor.hpp +++ b/src/descriptor_identifier/SISSO_DI/SISSORegressor.hpp @@ -94,6 +94,8 @@ public: // Python interface functions #ifdef PY_BINDINGS + + // DocString: sisso_reg_init_arr /** * @brief Constructor for the Regressor that takes in python objects (cpp definition in <python/descriptor_identifier/SISSORegressor.cpp) * diff --git a/src/feature_creation/feature_space/FeatureSpace.hpp b/src/feature_creation/feature_space/FeatureSpace.hpp index 4b8d8ff1..54d73b78 100644 --- a/src/feature_creation/feature_space/FeatureSpace.hpp +++ b/src/feature_creation/feature_space/FeatureSpace.hpp @@ -389,7 +389,6 @@ public: * @param allowed_ops list of allowed operators * @param allowed_param_ops dictionary of the parameterizable operators and their associated free parameters * @param prop The property to be learned (training data) - * @param task_sizes The number of samples per task * @param project_type The projection operator to use * @param max_phi highest rung value for the calculation * @param n_sis_select number of features to select during each SIS step @@ -406,7 +405,6 @@ public: py::list allowed_ops, py::list allowed_param_ops, py::list prop, - py::list task_sizes, std::string project_type="regression", int max_phi=1, int n_sis_select=1, @@ -426,7 +424,6 @@ public: * @param phi_0 The initial set of features to combine * @param allowed_ops list of allowed operators * @param prop The property to be learned (training data) - * @param task_sizes The number of samples per task * @param project_type The projection operator to use * @param max_phi highest rung value for the calculation * @param n_sis_select number of features to select during each SIS step @@ -442,7 +439,6 @@ public: py::list allowed_ops, py::list allowed_param_ops, np::ndarray prop, - py::list task_sizes, std::string project_type="regression", int max_phi=1, int n_sis_select=1, @@ -462,7 +458,6 @@ public: * @param phi_0 The initial set of features to combine * @param allowed_ops list of allowed operators * @param prop The property to be learned (training data) - * @param task_sizes The number of samples per task * @param project_type The projection operator to use * @param max_phi highest rung value for the calculation * @param n_sis_select number of features to select during each SIS step @@ -476,7 +471,6 @@ public: py::list phi_0, py::list allowed_ops, py::list prop, - py::list task_sizes, std::string project_type="regression", int max_phi=1, int n_sis_select=1, @@ -494,7 +488,6 @@ public: * @param phi_0 The initial set of features to combine * @param allowed_ops list of allowed operators * @param prop The property to be learned (training data) - * @param task_sizes The number of samples per task * @param project_type The projection operator to use * @param max_phi highest rung value for the calculation * @param n_sis_select number of features to select during each SIS step @@ -508,7 +501,6 @@ public: py::list phi_0, py::list allowed_ops, np::ndarray prop, - py::list task_sizes, std::string project_type="regression", int max_phi=1, int n_sis_select=1, diff --git a/src/feature_creation/node/FeatureNode.hpp b/src/feature_creation/node/FeatureNode.hpp index 82206701..0c1e8505 100644 --- a/src/feature_creation/node/FeatureNode.hpp +++ b/src/feature_creation/node/FeatureNode.hpp @@ -74,6 +74,7 @@ public: const bool set_val=true ); #ifdef PY_BINDINGS + // DocString: feat_node_init_list /** * @brief Constructs a feature node using numpy arrays (cpp definition in "python/feature_creation/FeatureNode.cpp) * @@ -85,6 +86,7 @@ public: */ FeatureNode(unsigned long int feat_ind, std::string expr, np::ndarray value, np::ndarray test_value, Unit unit); + // DocString: feat_node_init_arr /** * @brief Constructs a feature node using Python lists (cpp definition in "python/feature_creation/FeatureNode.cpp) * @@ -143,12 +145,14 @@ public: */ void reset_feats(std::vector<node_ptr>& phi){}; + // DocString: feat_node_x_in_expr /** * @brief Get the list of feature expressions * @return vector storing the expressions for all primary features that show up in feature in the order they appear in the postfix notation */ virtual inline std::vector<std::string> get_x_in_expr_list() const {return std::vector<std::string>(1, _expr);} + // DocString: feat_node_n_leaves /** * @brief return the number of leaves in the feature * diff --git a/src/feature_creation/node/ModelNode.hpp b/src/feature_creation/node/ModelNode.hpp index d7002ba2..914496d9 100644 --- a/src/feature_creation/node/ModelNode.hpp +++ b/src/feature_creation/node/ModelNode.hpp @@ -65,6 +65,7 @@ public: */ ModelNode(); + // DocString: model_node_init /** * @brief Constructs a feature node * @@ -91,6 +92,7 @@ public: const Unit unit ); + // DocString: model_node_init_node_ptr /** * @brief Copy constructor from general node_ptr * @@ -160,7 +162,7 @@ public: /** * @brief Evaluate the model for a new point * - * @param x_in_dct Dictionary describing the new point ("feature expr": value) + * @param x_in_dct Dictionary describing the new point (\"feature expr\": value) * @return The prediction of the model for a given data point */ double eval(std::map<std::string, double> x_in_dct); @@ -189,12 +191,14 @@ public: */ std::vector<double> eval(std::map<std::string, std::vector<double>> x_in_dct); + // DocString: model_node_x_in_expr /** * @brief get the list of feature expressions for each of the leaves * @return Vector containing the expression for each leaf in the binary expression tree */ inline std::vector<std::string> get_x_in_expr_list() const {return _x_in_expr_list;} + // DocString: model_node_n_leaves /** * @brief return the number of leaves in the feature * @@ -372,6 +376,7 @@ public: void update_div_mult_leaves(std::map<std::string, double>& div_mult_leaves, const double fact, double& expected_abs_tot) const; #ifdef PY_BINDINGS + // DocString: model_node_eval_arr /** * @brief Evaluate the model for a new point * @@ -380,6 +385,7 @@ public: */ inline double eval_py(np::ndarray x_in){return eval(python_conv_utils::from_ndarray<double>(x_in));} + // DocString: model_node_eval_list /** * @brief Evaluate the model for a new point * @@ -388,14 +394,16 @@ public: */ inline double eval_py(py::list x_in){return eval(python_conv_utils::from_list<double>(x_in));} + // DocString: model_node_eval_dict /** * @brief Evaluate the model for a new point * - * @param x_in_dct Dictionary describing the new point ("feature expr": value) + * @param x_in_dct Dictionary describing the new point (\"feature expr\": value) * @return The prediction of the model for a given data point */ inline double eval_py(py::dict x_in){return eval(python_conv_utils::from_dict<std::string, double>(x_in));} + // DocString: model_node_eval_many_arr /** * @brief Evaluate the model for a set of new points * @@ -404,6 +412,7 @@ public: */ np::ndarray eval_many_py(np::ndarray x_in); + // DocString: model_node_eval_many_dict /** * @brief Evaluate the model for a set of new points * diff --git a/src/feature_creation/node/Node.hpp b/src/feature_creation/node/Node.hpp index 3f97fd62..87bc48dc 100644 --- a/src/feature_creation/node/Node.hpp +++ b/src/feature_creation/node/Node.hpp @@ -20,7 +20,6 @@ #include "utils/math_funcs.hpp" #ifdef PY_BINDINGS -#include "python/conversion_utils.hpp" namespace py = boost::python; namespace np = boost::python::numpy; #endif @@ -125,12 +124,14 @@ public: */ virtual void reset_feats(std::vector<std::shared_ptr<Node>>& phi) = 0; + // DocString: node_x_in_expr /** * @brief Get the list of feature expressions * @return vector storing the expressions for all primary features that show up in feature in the order they appear in the postfix notation */ virtual std::vector<std::string> get_x_in_expr_list() const = 0; + // DocString: node_n_leaves /** * @brief return the number of leaves in the feature * diff --git a/src/feature_creation/node/operator_nodes/OperatorNode.hpp b/src/feature_creation/node/operator_nodes/OperatorNode.hpp index 503d455d..fce88709 100644 --- a/src/feature_creation/node/operator_nodes/OperatorNode.hpp +++ b/src/feature_creation/node/operator_nodes/OperatorNode.hpp @@ -146,9 +146,9 @@ public: return x_in_expr; } + // DocString: op_node_n_leaves /** * @brief return the number of leaves in the feature - * @details [long description] * * @param cur_n_leaves The current number of primary features that are inside the feature * @return total number of leaves of the binary expression tree @@ -184,24 +184,12 @@ public: ); } - // DocString: op_node_expr - /** - * @brief Get the expression for the overall feature (From root node down) - */ - virtual std::string expr() const = 0; - // DocString: node_latex_expr /** * @brief Get the latexified expression for the overall feature (From root node down) */ virtual std::string get_latex_expr() const = 0; - // DocString: op_node_unit - /** - * @brief Get the unit of the feature (combine the units of _feats) - */ - virtual Unit unit() const = 0; - /** * @brief Get the training data of the feature */ diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/absolute_value.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/absolute_value.hpp index f37662c9..cc7696ae 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/absolute_value.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/absolute_value.hpp @@ -47,6 +47,7 @@ public: */ AbsNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: abs_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/parameterized_absolute_value.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/parameterized_absolute_value.hpp index 3be3d22f..9419f726 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/parameterized_absolute_value.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs/parameterized_absolute_value.hpp @@ -79,6 +79,7 @@ public: */ AbsParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: abs_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/absolute_difference.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/absolute_difference.hpp index 6e17c5ad..d7368152 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/absolute_difference.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/absolute_difference.hpp @@ -51,6 +51,7 @@ public: */ AbsDiffNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind); + // DocString: abs_diff_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the features to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/parameterized_absolute_difference.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/parameterized_absolute_difference.hpp index a1830dcb..5a622386 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/parameterized_absolute_difference.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/abs_diff/parameterized_absolute_difference.hpp @@ -80,6 +80,7 @@ public: */ AbsDiffParamNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: abs_diff_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/add.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/add.hpp index a532154d..8770fc90 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/add.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/add.hpp @@ -48,6 +48,7 @@ public: */ AddNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind); + // DocString: add_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the features to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/parameterized_add.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/parameterized_add.hpp index 6071fedb..554f3e7f 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/parameterized_add.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/add/parameterized_add.hpp @@ -82,6 +82,7 @@ public: */ AddParamNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: add_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/cube.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/cube.hpp index 8412c6c2..5547beee 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/cube.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/cube.hpp @@ -47,6 +47,7 @@ public: */ CbNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: cb_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/parameterized_cube.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/parameterized_cube.hpp index c7470e67..764fd010 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/parameterized_cube.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cb/parameterized_cube.hpp @@ -79,6 +79,7 @@ public: */ CbParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: cb_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/cube_root.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/cube_root.hpp index 94abff84..9d1ef920 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/cube_root.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/cube_root.hpp @@ -47,6 +47,7 @@ public: */ CbrtNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: cbrt_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/parameterized_cube_root.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/parameterized_cube_root.hpp index f2c47e1d..d96e0a68 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/parameterized_cube_root.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cbrt/parameterized_cube_root.hpp @@ -78,6 +78,7 @@ public: */ CbrtParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: cbrt_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/cos.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/cos.hpp index a159789b..fe730c6a 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/cos.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/cos.hpp @@ -47,6 +47,7 @@ public: */ CosNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: cos_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/parameterized_cos.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/parameterized_cos.hpp index 1b437577..13e4f13a 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/parameterized_cos.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/cos/parameterized_cos.hpp @@ -79,6 +79,7 @@ public: */ CosParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: cos_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/divide.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/divide.hpp index ca40eb12..a8fffa38 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/divide.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/divide.hpp @@ -48,6 +48,7 @@ public: */ DivNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind); + // DocString: div_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the features to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/parameterized_divide.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/parameterized_divide.hpp index b958eef9..58410be6 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/parameterized_divide.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/div/parameterized_divide.hpp @@ -82,6 +82,7 @@ public: */ DivParamNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: div_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/exp/exponential.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/exp/exponential.hpp index e71f9906..b3d0b315 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/exp/exponential.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/exp/exponential.hpp @@ -47,6 +47,7 @@ public: */ ExpNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: exp_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/inverse.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/inverse.hpp index 12d95a9a..3bc75dd2 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/inverse.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/inverse.hpp @@ -43,6 +43,7 @@ public: */ InvNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: inv_node_init /** * @brief Constructor without checking feature values * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/parameterized_inverse.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/parameterized_inverse.hpp index c43f0187..5356e5c9 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/parameterized_inverse.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/inv/parameterized_inverse.hpp @@ -79,6 +79,7 @@ public: */ InvParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: inv_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/log.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/log.hpp index 8089ee11..6b7c1f9e 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/log.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/log.hpp @@ -47,6 +47,7 @@ public: */ LogNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: log_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/parameterized_log.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/parameterized_log.hpp index a088c757..9cfc6dc7 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/parameterized_log.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/log/parameterized_log.hpp @@ -81,6 +81,7 @@ public: */ LogParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: log_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/multiply.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/multiply.hpp index 6d146221..18d162df 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/multiply.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/multiply.hpp @@ -49,6 +49,7 @@ public: */ MultNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind); + // DocString: mult_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the features to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/parameterized_multiply.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/parameterized_multiply.hpp index 0ab306c0..10ab81fd 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/parameterized_multiply.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/mult/parameterized_multiply.hpp @@ -80,6 +80,7 @@ public: */ MultParamNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: mult_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/negative_exponential.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/negative_exponential.hpp index 850ae2c6..e947a042 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/negative_exponential.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/negative_exponential.hpp @@ -48,6 +48,7 @@ public: */ NegExpNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: neg_exp_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/parameterized_negative_exponential.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/parameterized_negative_exponential.hpp index 5e40984d..5af26bd5 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/parameterized_negative_exponential.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/neg_exp/parameterized_negative_exponential.hpp @@ -79,6 +79,7 @@ public: */ NegExpParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: neg_exp_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/parameterized_sin.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/parameterized_sin.hpp index a57e8b05..2b2e06c6 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/parameterized_sin.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/parameterized_sin.hpp @@ -79,6 +79,7 @@ public: */ SinParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: sin_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/sin.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/sin.hpp index 0e641d28..dd2a85fd 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/sin.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sin/sin.hpp @@ -48,6 +48,7 @@ public: */ SinNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: sin_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/parameterized_sixth_power.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/parameterized_sixth_power.hpp index 0798bead..e54a36fa 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/parameterized_sixth_power.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/parameterized_sixth_power.hpp @@ -79,6 +79,7 @@ public: */ SixPowParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: six_pow_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/sixth_power.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/sixth_power.hpp index 1dbf6138..668e2e52 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/sixth_power.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/six_pow/sixth_power.hpp @@ -48,6 +48,7 @@ public: */ SixPowNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: six_pow_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/parameterized_square.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/parameterized_square.hpp index 282d5027..30198b97 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/parameterized_square.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/parameterized_square.hpp @@ -79,6 +79,7 @@ public: */ SqParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: sq_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/square.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/square.hpp index ffffc816..65fed714 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/square.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sq/square.hpp @@ -47,6 +47,7 @@ public: */ SqNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: sq_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/parameterized_square_root.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/parameterized_square_root.hpp index 3b44b479..05b00d56 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/parameterized_square_root.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/parameterized_square_root.hpp @@ -81,6 +81,7 @@ public: */ SqrtParamNode(const node_ptr feat, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: sqrt_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/square_root.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/square_root.hpp index c061e5e6..5a547944 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/square_root.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sqrt/square_root.hpp @@ -48,6 +48,7 @@ public: */ SqrtNode(const node_ptr feat, const unsigned long int feat_ind); + // DocString: sqrt_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/parameterized_subtract.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/parameterized_subtract.hpp index d3a8e481..01e2fda4 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/parameterized_subtract.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/parameterized_subtract.hpp @@ -82,11 +82,13 @@ public: */ SubParamNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind, std::shared_ptr<NLOptimizer> optimizer); + // DocString: sub_param_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the feature to operate on * - * @param feat shared_ptr of the feature to operate on (A) + * @param feat_1 shared_ptr of the feature to operate on (A) + * @param feat_2 shared_ptr of the feature to operate on (B) * @param feat_ind Index of the new feature * @param l_bound Minimum absolute value allowed for the feature. * @param u_bound Maximum absolute value allowed for the feature. diff --git a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/subtract.hpp b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/subtract.hpp index 308d1be2..4bee0cbc 100644 --- a/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/subtract.hpp +++ b/src/feature_creation/node/operator_nodes/allowed_operator_nodes/sub/subtract.hpp @@ -50,6 +50,7 @@ public: */ SubNode(const node_ptr feat_1, const node_ptr feat_2, const unsigned long int feat_ind); + // DocString: sub_node_init /** * @brief Constructor * @details Constructs the Node from node pointer of the features to operate on diff --git a/src/feature_creation/node/value_storage/nodes_value_containers.cpp b/src/feature_creation/node/value_storage/nodes_value_containers.cpp index 7798e32f..cd903ff7 100644 --- a/src/feature_creation/node/value_storage/nodes_value_containers.cpp +++ b/src/feature_creation/node/value_storage/nodes_value_containers.cpp @@ -47,10 +47,6 @@ void node_value_arrs::initialize_values_arr( if(set_task_sz) { TASK_SZ_TRAIN = {n_samples}; - } - - if(set_task_sz) - { TASK_SZ_TEST = {n_samples_test}; } diff --git a/src/feature_creation/node/value_storage/nodes_value_containers.hpp b/src/feature_creation/node/value_storage/nodes_value_containers.hpp index 6b6bfd85..12f998ea 100644 --- a/src/feature_creation/node/value_storage/nodes_value_containers.hpp +++ b/src/feature_creation/node/value_storage/nodes_value_containers.hpp @@ -21,6 +21,12 @@ #include"utils/enum.hpp" +#ifdef PY_BINDINGS +#include "python/conversion_utils.hpp" +namespace np = boost::python::numpy; +namespace py = boost::python; +#endif + namespace node_value_arrs { extern std::vector<double> TEMP_STORAGE_ARR; //!< Array to temporarily store feature training data @@ -67,6 +73,7 @@ namespace node_value_arrs const bool use_params ); + // DocString: node_vals_init_no_ts /** * @brief Initialize the node value arrays * @details Using the size of the initial feature space constructor the storage arrays @@ -75,7 +82,6 @@ namespace node_value_arrs * @param n_samples_test Number of test samples for each feature * @param n_primary_feat Number of primary features * @param max_rung Largest rung of a feature - * @param use_params If True set up parameter storage */ inline void initialize_values_arr( const int n_samples, @@ -120,6 +126,7 @@ namespace node_value_arrs */ void initialize_param_storage(); + // DocString: node_vlas_init_d_mat /** * @brief Initialize the descriptor matrix * @details Initialize an empty descriptor matrix @@ -386,6 +393,60 @@ namespace node_value_arrs */ inline void clear_temp_test_reg(){std::fill_n(TEMP_STORAGE_TEST_REG.begin(), TEMP_STORAGE_TEST_REG.size(), -1);} +#ifdef PY_BINDINGS + + // DocString: node_vals_ts_list + /** + * @brief Initialize the node value arrays + * @details Using the size of the initial feature space constructor the storage arrays + * + * @param task_sz_train Number of training samples per task + * @param task_sz_test Number of test sample per task + * @param n_primary_feat Number of primary features + * @param max_rung Largest rung of a feature + */ + inline void initialize_values_arr( + py::list task_sz_train, + py::list task_sz_test, + int n_primary_feat, + int max_rung + ) + { + initialize_values_arr( + python_conv_utils::from_list<int>(task_sz_train), + python_conv_utils::from_list<int>(task_sz_test), + n_primary_feat, + max_rung, + false + ); + } + + // DocString: node_vals_ts_arr + /** + * @brief Initialize the node value arrays + * @details Using the size of the initial feature space constructor the storage arrays + * + * @param task_sz_train Number of training samples per task + * @param task_sz_test Number of test sample per task + * @param n_primary_feat Number of primary features + * @param max_rung Largest rung of a feature + */ + inline void initialize_values_arr( + np::ndarray task_sz_train, + np::ndarray task_sz_test, + int n_primary_feat, + int max_rung + ) + { + initialize_values_arr( + python_conv_utils::from_ndarray<int>(task_sz_train), + python_conv_utils::from_ndarray<int>(task_sz_test), + n_primary_feat, + max_rung, + false + ); + } +#endif } #endif diff --git a/src/feature_creation/units/Unit.hpp b/src/feature_creation/units/Unit.hpp index dc66c4a6..852a2853 100644 --- a/src/feature_creation/units/Unit.hpp +++ b/src/feature_creation/units/Unit.hpp @@ -41,6 +41,7 @@ protected: std::map<std::string, double> _dct; //!< the dictionary describing the units <unit string, unit power> public: + // DocString: unit_base_const /** * @brief Base Constructor * @details Creates a unit with no entries diff --git a/src/python/__init__.py b/src/python/__init__.py index c5c9f9f2..46a04aab 100644 --- a/src/python/__init__.py +++ b/src/python/__init__.py @@ -182,7 +182,7 @@ def generate_phi_0_from_csv( exprs = list([col.split(":")[0].split("(")[0] for col in columns]) units = list([get_unit(col) for col in columns]) - initialize_values_arr(len(train_inds), len(leave_out_inds), len(columns), max_rung) + initialize_values_arr(task_sizes_train, task_sizes_test, len(columns), max_rung) try: initialize_param_storage() except NameError: @@ -277,7 +277,6 @@ def generate_fs_csv( allowed_ops, allowed_param_ops, prop, - task_sizes_train, calc_type, max_phi, n_sis_select, @@ -292,7 +291,6 @@ def generate_fs_csv( phi_0, allowed_ops, prop, - task_sizes_train, calc_type, max_phi, n_sis_select, @@ -352,7 +350,6 @@ def generate_fs( allowed_ops, allowed_param_ops, prop, - task_sizes_train, calc_type, max_phi, n_sis_select, @@ -367,7 +364,6 @@ def generate_fs( phi_0, allowed_ops, prop, - task_sizes_train, calc_type, max_phi, n_sis_select, diff --git a/src/python/_sisso.cpp b/src/python/_sisso.cpp index 77e5d03d..f7d8e69c 100644 --- a/src/python/_sisso.cpp +++ b/src/python/_sisso.cpp @@ -10,7 +10,7 @@ static void finalize(); BOOST_PYTHON_MODULE(_sisso) { - py::docstring_options local_docstring_options(true, true, true); + py::docstring_options local_docstring_options(true, true, false); Py_Initialize(); np::initialize(); diff --git a/src/python/bindings_docstring_keyed.cpp b/src/python/bindings_docstring_keyed.cpp index d483907b..43413cc0 100644 --- a/src/python/bindings_docstring_keyed.cpp +++ b/src/python/bindings_docstring_keyed.cpp @@ -38,11 +38,44 @@ void sisso::register_all() sisso::feature_creation::node::registerSixPowNode(); void (*init_val_ar)(int, int, int, int) = &node_value_arrs::initialize_values_arr; - - def("phi_selected_from_file", &str2node::phi_selected_from_file_py); - def("initialize_values_arr", init_val_ar); - def("initialize_d_matrix_arr", &node_value_arrs::initialize_d_matrix_arr); - def("matlabify", &str_utils::matlabify); + void (*init_val_ar_list)(py::list, py::list, int, int) = &node_value_arrs::initialize_values_arr; + void (*init_val_ar_arr)(np::ndarray, np::ndarray, int, int) = &node_value_arrs::initialize_values_arr; + + def( + "phi_selected_from_file", + &str2node::phi_selected_from_file_py, + (arg("filename"), arg("phi_0")), + "@DocString_node_utils_phi_sel_from_file@" + ); + def( + "initialize_values_arr", + init_val_ar, + (arg("n_samples"), arg("n_samples_test"), arg("n_primary_feat"), arg("max_rung")), + "@DocString_node_vals_init_no_ts@" + ); + def( + "initialize_values_arr", + init_val_ar_list, + (arg("task_sz_train"), arg("task_sz_test"), arg("n_primary_feat"), arg("max_rung")), + "@DocString_node_vals_ts_list@" + ); + def( + "initialize_values_arr", + init_val_ar_arr, + (arg("task_sz_train"), arg("task_sz_test"), arg("n_primary_feat"), arg("max_rung")), + "@DocString_node_vals_ts_arr@" + ); + def( + "initialize_d_matrix_arr", + &node_value_arrs::initialize_d_matrix_arr, + "@DocString_node_vlas_init_d_mat@" + ); + def( + "matlabify", + &str_utils::matlabify, + (arg("str")), + "@DocString_str_utils_matlabify@" + ); #ifdef PARAMETERIZE sisso::feature_creation::node::registerAddParamNode(); @@ -108,15 +141,84 @@ void sisso::feature_creation::registerFeatureSpace() void (FeatureSpace::*sis_ndarray)(np::ndarray) = &FeatureSpace::sis; #ifdef PARAMETERIZE - class_<FeatureSpace>("FeatureSpace", init<list, list, list, np::ndarray, list, optional<std::string, int, int, int, int, double, double, double, int>>()) - .def(init<list, list, list, list, list, optional<std::string, int, int, int, int, double, double, double, int>>()) - .def(init<std::string, list, list, list, optional<std::string, int, double>>()) - .def(init<std::string, list, np::ndarray, list, optional<std::string, int, double>>()) - .def("sis", sis_list, "@DocString_feat_space_sis_list@") - .def("sis", sis_ndarray, "@DocString_feat_space_sis_arr@") - .def("feat_in_phi", &FeatureSpace::feat_in_phi, "@DocString_feat_space_feat_in_phi@") - .def("remove_feature", &FeatureSpace::remove_feature, "@DocString_feat_space_remove_feature@") - .def("get_feature", &FeatureSpace::get_feature, "@DocString_feat_space_get_feature@") + class_<FeatureSpace>( + "FeatureSpace", + init<list, list, list, np::ndarray, optional<std::string, int, int, int, int, double, double, double, int, bool>>( + ( + arg("self"), + arg("phi_0"), + arg("allowed_ops"), + arg("allowed_param_ops"), + arg("prop"), + arg("project_type")="regression", + arg("max_phi")=1, + arg("n_sis_select")=1, + arg("max_store_rung")=-1, + arg("n_rung_generate")=0, + arg("cross_corr_max")=1.0, + arg("min_abs_feat_val")=1e-50, + arg("max_abs_feat_val")=1e50, + arg("max_param_depth")=-1, + arg("reparam_residual")=false + ), + "@DocString_feat_space_init_np_array@" + ) + ) + .def( + init<list, list, list, list, optional<std::string, int, int, int, int, double, double, double, int, bool>>( + ( + arg("self"), + arg("phi_0"), + arg("allowed_ops"), + arg("allowed_param_ops"), + arg("prop"), + arg("project_type")="regression", + arg("max_phi")=1, + arg("n_sis_select")=1, + arg("max_store_rung")=-1, + arg("n_rung_generate")=0, + arg("cross_corr_max")=1.0, + arg("min_abs_feat_val")=1e-50, + arg("max_abs_feat_val")=1e50, + arg("max_param_depth")=-1, + arg("reparam_residual")=false + ), + "@DocString_feat_space_init_py_list@" + ) + ) + .def( + init<std::string, list, list, list, optional<std::string, int, double>>( + ( + arg("feature_file"), + arg("phi_0"), + arg("prop"), + arg("task_sizes"), + arg("project_type")="regression", + arg("n_sis_select")=1, + arg("cross_corr_max")=1.0 + ), + "@DocString_feat_space_init_file_py_list@" + ) + ) + .def( + init<std::string, list, np::ndarray, list, optional<std::string, int, double>>( + ( + arg("feature_file"), + arg("phi_0"), + arg("prop"), + arg("task_sizes"), + arg("project_type")="regression", + arg("n_sis_select")=1, + arg("cross_corr_max")=1.0 + ), + "@DocString_feat_space_init_file_np_array@" + ) + ) + .def("sis", sis_list, (arg("prop")), "@DocString_feat_space_sis_list@") + .def("sis", sis_ndarray, (arg("prop")), "@DocString_feat_space_sis_arr@") + .def("feat_in_phi", &FeatureSpace::feat_in_phi, (arg("ind")), "@DocString_feat_space_feat_in_phi@") + .def("remove_feature", &FeatureSpace::remove_feature, (arg("ind")), "@DocString_feat_space_remove_feature@") + .def("get_feature", &FeatureSpace::get_feature, (arg("ind")), "@DocString_feat_space_get_feature@") .add_property("phi_selected", &FeatureSpace::phi_selected_py, "@DocString_feat_space_phi_selected_py@") .add_property("phi0", &FeatureSpace::phi0_py, "@DocString_feat_space_phi0_py@") .add_property("phi", &FeatureSpace::phi_py, "@DocString_feat_space_phi_py@") @@ -135,15 +237,78 @@ void sisso::feature_creation::registerFeatureSpace() .add_property("n_rung_generate", &FeatureSpace::n_rung_generate, "@DocString_feat_space_n_rung_generate@") ; #else - class_<FeatureSpace>("FeatureSpace", init<list, list, np::ndarray, list, optional<std::string, int, int, int, int, double, double, double>>()) - .def(init<list, list, list, list, optional<std::string, int, int, int, int, double, double, double>>()) - .def(init<std::string, list, list, list, optional<std::string, int, double>>()) - .def(init<std::string, list, np::ndarray, list, optional<std::string, int, double>>()) - .def("sis", sis_list, "@DocString_feat_space_sis_list@") - .def("sis", sis_ndarray, "@DocString_feat_space_sis_arr@") - .def("feat_in_phi", &FeatureSpace::feat_in_phi, "@DocString_feat_space_feat_in_phi@") - .def("remove_feature", &FeatureSpace::remove_feature, "@DocString_feat_space_remove_feature@") - .def("get_feature", &FeatureSpace::get_feature, "@DocString_feat_space_get_feature@") + class_<FeatureSpace>( + "FeatureSpace", + init<list, list, list, np::ndarray, optional<std::string, int, int, int, int, double, double, double, int>>( + ( + arg("phi_0"), + arg("allowed_ops"), + arg("prop"), + arg("project_type")="regression", + arg("max_phi")=1, + arg("n_sis_select")=1, + arg("max_store_rung")=-1, + arg("n_rung_generate")=0, + arg("cross_corr_max")=1.0, + arg("min_abs_feat_val")=1e-50, + arg("max_abs_feat_val")=1e50, + arg("max_param_depth")=-1, + ), + "@DocString_feat_space_init_np_array_no_param@" + ) + ) + .def( + init<list, list, list, list, optional<std::string, int, int, int, int, double, double, double, int>>( + ( + arg("phi_0"), + arg("allowed_ops"), + arg("prop"), + arg("project_type")="regression", + arg("max_phi")=1, + arg("n_sis_select")=1, + arg("max_store_rung")=-1, + arg("n_rung_generate")=0, + arg("cross_corr_max")=1.0, + arg("min_abs_feat_val")=1e-50, + arg("max_abs_feat_val")=1e50, + arg("max_param_depth")=-1, + ), + "@DocString_feat_space_init_py_list_no_param@" + ) + ) + .def( + init<std::string, list, list, list, optional<std::string, int, double>>( + ( + arg("feature_file"), + arg("phi_0"), + arg("prop"), + arg("task_sizes"), + arg("project_type")="regression", + arg("n_sis_select")=1, + arg("cross_corr_max")=1.0 + ), + "@DocString_feat_space_init_file_py_list@" + ) + ) + .def( + init<std::string, list, np::ndarray, list, optional<std::string, int, double>>( + ( + arg("feature_file"), + arg("phi_0"), + arg("prop"), + arg("task_sizes"), + arg("project_type")="regression", + arg("n_sis_select")=1, + arg("cross_corr_max")=1.0 + ), + "@DocString_feat_space_init_file_np_array@" + ) + ) + .def("sis", sis_list, (arg("prop")), "@DocString_feat_space_sis_list@") + .def("sis", sis_ndarray, (arg("prop")), "@DocString_feat_space_sis_arr@") + .def("feat_in_phi", &FeatureSpace::feat_in_phi, (arg("ind")), "@DocString_feat_space_feat_in_phi@") + .def("remove_feature", &FeatureSpace::remove_feature, (arg("ind")), "@DocString_feat_space_remove_feature@") + .def("get_feature", &FeatureSpace::get_feature, (arg("ind")), "@DocString_feat_space_get_feature@") .add_property("phi_selected", &FeatureSpace::phi_selected_py, "@DocString_feat_space_phi_selected_py@") .add_property("phi0", &FeatureSpace::phi0_py, "@DocString_feat_space_phi0_py@") .add_property("phi", &FeatureSpace::phi_py, "@DocString_feat_space_phi_py@") @@ -166,10 +331,10 @@ void sisso::feature_creation::registerFeatureSpace() void sisso::feature_creation::registerUnit() { - class_<Unit>("Unit", init<>()) - .def(init<std::map<std::string, double>>()) - .def(init<std::string>()) - .def(init<Unit&>()) + class_<Unit>("Unit", init<>((arg("self")), "@DocString_unit_base_const@")) + .def(init<std::map<std::string, double>>((arg("dct")), "@DocString_unit_init_dict@")) + .def(init<std::string>((arg("unit_str")), "@DocString_unit_init_str@")) + .def(init<Unit&>((arg("o")), "@DocString_unit_init_unit@")) .def("__str__", &Unit::toString, "@DocString_unit_str@") .def("__repr__", &Unit::toString, "@DocString_unit_str@") .def("inverse", &Unit::inverse, "@DocString_unit_inverse@") @@ -179,7 +344,7 @@ void sisso::feature_creation::registerUnit() .def(self /= self) .def(self == self) .def(self != self) - .def("__pow__", &Unit::operator^, "@DocString_unit_pow@") + .def("__pow__", &Unit::operator^, (arg("pow")), "@DocString_unit_pow@") .add_property("latex_str", &Unit::toLatexString, "@DocString_unit_latex_str@") ; } @@ -188,7 +353,7 @@ void sisso::feature_creation::registerUnit() void sisso::feature_creation::nloptimizer::registerNLOptimizer() { class_<sisso::feature_creation::nloptimizer::NLOptimizerWrap, boost::noncopyable>("NLOptimizer", no_init) - .def("optimize_feature_params", &NLOptimizer::optimize_feature_params, "@DocString_nloptimizer_optimize_feature_params@") + .def("optimize_feature_params", &NLOptimizer::optimize_feature_params, (arg("feat")), "@DocString_nloptimizer_optimize_feature_params@") ; } void sisso::feature_creation::nloptimizer::registerNLOptimizerClassification() @@ -208,11 +373,8 @@ void sisso::feature_creation::registerUnit() { void (Node::*reindex_1)(unsigned long int) = &Node::reindex; void (Node::*reindex_2)(unsigned long int, unsigned long int) = &Node::reindex; - // void (Node::*expr_no_param)() = &Node::expr; class_<sisso::feature_creation::node::NodeWrap, boost::noncopyable>("Node", no_init) - .def("reindex", reindex_1, "@DocString_node_reindex_1@") - .def("reindex", reindex_2, "@DocString_node_reindex_2@") .add_property("n_samp", &Node::n_samp, "@DocString_node_n_samp@") .add_property("n_test_samp", &Node::n_test_samp, "@DocString_node_n_test_samp@") .add_property("feat_ind", &Node::feat_ind, "@DocString_node_feat_ind@") @@ -225,14 +387,16 @@ void sisso::feature_creation::registerUnit() .add_property("postfix_expr", &Node::postfix_expr, "@DocString_node_postfix_expr@") .add_property("latex_expr", &Node::latex_expr, "@DocString_node_latex_expr@") .add_property("parameters", &Node::parameters_py, "@DocString_node_parameters_py@") + .def("reindex", reindex_1, (arg("feat_ind")), "@DocString_node_reindex_1@") + .def("reindex", reindex_2, (arg("feat_ind"), arg("arr_ind")), "@DocString_node_reindex_2@") .def("unit", pure_virtual(&Node::unit), "@DocString_node_unit@") .def("is_nan", pure_virtual(&Node::is_nan), "@DocString_node_is_nan@") .def("is_const", pure_virtual(&Node::is_const), "@DocString_node_is_const@") .def("rung", pure_virtual(&Node::rung), "@DocString_node_rung@") .def("n_feats", pure_virtual(&Node::n_feats), "@DocString_node_n_feats@") - .def("feat", pure_virtual(&Node::feat), "@DocString_node_feat@") - .def("n_leaves", pure_virtual(&Node::n_leaves)) - .def("x_in_expr_list", pure_virtual(&Node::get_x_in_expr_list)) + .def("feat", pure_virtual(&Node::feat), (arg("feat_ind")), "@DocString_node_feat@") + .def("n_leaves", pure_virtual(&Node::n_leaves), (arg("cur_n_leaves")), "@DocString_node_n_leaves@") + .def("x_in_expr_list", pure_virtual(&Node::get_x_in_expr_list), "@DocString_node_x_in_expr@") ; } #else @@ -241,8 +405,6 @@ void sisso::feature_creation::registerUnit() void (Node::*reindex_1)(unsigned long int) = &Node::reindex; void (Node::*reindex_2)(unsigned long int, unsigned long int) = &Node::reindex; class_<sisso::feature_creation::node::NodeWrap, boost::noncopyable>("Node", no_init) - .def("reindex", reindex_1, "@DocString_node_reindex_1@") - .def("reindex", reindex_2, "@DocString_node_reindex_2@") .add_property("n_samp", &Node::n_samp, "@DocString_node_n_samp@") .add_property("n_test_samp", &Node::n_test_samp, "@DocString_node_n_test_samp@") .add_property("feat_ind", &Node::feat_ind, "@DocString_node_feat_ind@") @@ -254,14 +416,16 @@ void sisso::feature_creation::registerUnit() .add_property("primary_feat_decomp", &Node::primary_feature_decomp_py, "@DocString_node_primary_feature_decomp@") .add_property("postfix_expr", &Node::postfix_expr, "@DocString_node_postfix_expr@") .add_property("latex_expr", &Node::latex_expr, "@DocString_node_latex_expr@") + .def("reindex", reindex_1, (arg("feat_ind")), "@DocString_node_reindex_1@") + .def("reindex", reindex_2, (arg("feat_ind"), arg("arr_ind")), "@DocString_node_reindex_2@") .def("unit", pure_virtual(&Node::unit), "@DocString_node_unit@") .def("is_nan", pure_virtual(&Node::is_nan), "@DocString_node_is_nan@") .def("is_const", pure_virtual(&Node::is_const), "@DocString_node_is_const@") .def("rung", pure_virtual(&Node::rung), "@DocString_node_rung@") .def("n_feats", pure_virtual(&Node::n_feats), "@DocString_node_n_feats@") - .def("feat", pure_virtual(&Node::feat), "@DocString_node_feat@") - .def("n_leaves", pure_virtual(&Node::n_leaves)) - .def("x_in_expr_list", pure_virtual(&Node::get_x_in_expr_list)) + .def("feat", pure_virtual(&Node::feat), (arg("feat_ind")), "@DocString_node_feat@") + .def("n_leaves", pure_virtual(&Node::n_leaves), (arg("cur_n_leaves")), "@DocString_node_n_leaves@") + .def("x_in_expr_list", pure_virtual(&Node::get_x_in_expr_list), "@DocString_node_x_in_expr@") ; } #endif @@ -273,17 +437,19 @@ void sisso::feature_creation::node::registerFeatureNode() std::string (FeatureNode::*expr_no_param)() const = &FeatureNode::expr; using namespace boost::python; - class_<FeatureNode, bases<Node>>("FeatureNode", init<int, std::string, np::ndarray, np::ndarray, Unit>()) + class_<FeatureNode, bases<Node>>("FeatureNode", init<int, std::string, np::ndarray, np::ndarray, Unit>( )) + // class_<FeatureNode, bases<Node>>("FeatureNode", init<int, std::string, np::ndarray, np::ndarray, Unit>((arg("feat_ind"), arg("expr"), arg("value"), arg("test_value"), arg("unit")), "@DocString_feat_node_init_arr@")) .def(init<int, std::string, py::list, py::list, Unit>()) + // .def(init<int, std::string, py::list, py::list, Unit>((arg("feat_ind"), arg("expr"), arg("value"), arg("test_value"), arg("unit")), "@DocString_feat_node_init_list@")) .def("is_nan", &FeatureNode::is_nan, "@DocString_feat_node_is_nan@") .def("is_const", &FeatureNode::is_const, "@DocString_feat_node_is_const@") - .def("set_value", set_value_no_param, "@DocString_feat_node_set_value@") - .def("set_test_value", set_test_value_no_param, "@DocString_feat_node_set_test_value@") + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_feat_node_set_value@") + .def("set_test_value", set_test_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_feat_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_feat_node_expr_const@") .add_property("unit", &FeatureNode::unit, "@DocString_feat_node_unit@") .add_property("rung", &FeatureNode::rung, "@DocString_feat_node_rung@") - .add_property("n_leaves", &FeatureNode::n_leaves) - .add_property("x_in_expr_list", &FeatureNode::get_x_in_expr_list) + .add_property("n_leaves", &FeatureNode::n_leaves, "@DocString_node_n_leaves@") + .add_property("x_in_expr_list", &FeatureNode::get_x_in_expr_list, "@DocString_node_x_in_expr@") ; } @@ -297,20 +463,20 @@ void sisso::feature_creation::node::registerModelNode() double (ModelNode::*eval_dict)(py::dict) = &ModelNode::eval_py; using namespace boost::python; - class_<ModelNode, bases<FeatureNode>>("ModelNode", init<int, int, std::string, std::string, std::string, std::string, std::vector<double>, std::vector<double>, std::vector<std::string>, Unit>()) - .def(init<node_ptr>()) + class_<ModelNode, bases<FeatureNode>>("ModelNode", init<int, int, std::string, std::string, std::string, std::string, std::vector<double>, std::vector<double>, std::vector<std::string>, Unit>((arg("feat_ind"), arg("rung"), arg("expr"), arg("latex_expr"), arg("expr_postfix"), arg("matlab_fxn_expr"), arg("value"), arg("test_value"), arg("x_in_expr_list"), arg("unit")), "@DocString_model_node_init@")) + .def(init<node_ptr>((arg("in_node")), "@DocString_model_node_init_node_ptr@")) .def("is_nan", &ModelNode::is_nan, "@DocString_model_node_is_nan@") .def("is_const", &ModelNode::is_const, "@DocString_model_node_is_const@") - .def("set_value", &ModelNode::set_value, "@DocString_model_node_set_value@") - .def("set_test_value", &ModelNode::set_test_value, "@DocString_model_node_set_test_value@") - .def("eval_many", eval_many_dict) - .def("eval_many", eval_many_ndarr) - .def("eval", eval_ndarr) - .def("eval", eval_list) - .def("eval", eval_dict) + .def("set_value", &ModelNode::set_value, (arg("offset"), arg("for_comp")), "@DocString_model_node_set_value@") + .def("set_test_value", &ModelNode::set_test_value, (arg("offset"), arg("for_comp")), "@DocString_model_node_set_test_value@") + .def("eval_many", eval_many_dict, (arg("x_in")), "@DocString_model_node_eval_many_dict@") + .def("eval_many", eval_many_ndarr, (arg("x_in")), "@DocString_model_node_eval_many_arr@") + .def("eval", eval_ndarr, (arg("x_in")), "@DocString_model_node_eval_arr@") + .def("eval", eval_list, (arg("x_in")), "@DocString_model_node_eval_list@") + .def("eval", eval_dict, (arg("x_in")), "@DocString_model_node_eval_dict@") .add_property("rung", &ModelNode::rung, "@DocString_model_node_rung@") - .add_property("n_leaves", &ModelNode::n_leaves) - .add_property("x_in_expr_list", &ModelNode::x_in_expr_list_py) + .add_property("n_leaves", &ModelNode::n_leaves, "@DocString_node_n_leaves@") + .add_property("x_in_expr_list", &ModelNode::x_in_expr_list_py, "@DocString_node_x_in_expr@") ; } @@ -320,8 +486,8 @@ void sisso::feature_creation::node::registerAddNode() void (AddNode::*set_test_value_no_param)(int, bool) const = &AddNode::set_test_value; std::string (AddNode::*expr_no_param)() const = &AddNode::expr; - class_<AddNode, bases<OperatorNode<2>>>("AddNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_add_node_set_value@") + class_<AddNode, bases<OperatorNode<2>>>("AddNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_add_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_add_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_add_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_add_node_expr@") .add_property("unit", &AddNode::unit, "@DocString_add_node_unit@") @@ -335,8 +501,8 @@ void sisso::feature_creation::node::registerSubNode() void (SubNode::*set_test_value_no_param)(int, bool) const = &SubNode::set_test_value; std::string (SubNode::*expr_no_param)() const = &SubNode::expr; - class_<SubNode, bases<OperatorNode<2>>>("SubNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sub_node_set_value@") + class_<SubNode, bases<OperatorNode<2>>>("SubNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sub_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sub_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sub_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sub_node_expr@") .add_property("unit", &SubNode::unit, "@DocString_sub_node_unit@") @@ -350,8 +516,8 @@ void sisso::feature_creation::node::registerDivNode() void (DivNode::*set_test_value_no_param)(int, bool) const = &DivNode::set_test_value; std::string (DivNode::*expr_no_param)() const = &DivNode::expr; - class_<DivNode, bases<OperatorNode<2>>>("DivNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_div_node_set_value@") + class_<DivNode, bases<OperatorNode<2>>>("DivNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_div_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_div_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_div_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_div_node_expr@") .add_property("unit", &DivNode::unit, "@DocString_div_node_unit@") @@ -365,8 +531,8 @@ void sisso::feature_creation::node::registerMultNode() void (MultNode::*set_test_value_no_param)(int, bool) const = &MultNode::set_test_value; std::string (MultNode::*expr_no_param)() const = &MultNode::expr; - class_<MultNode, bases<OperatorNode<2>>>("MultNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_mult_node_set_value@") + class_<MultNode, bases<OperatorNode<2>>>("MultNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_mult_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_mult_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_mult_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_mult_node_expr@") .add_property("unit", &MultNode::unit, "@DocString_mult_node_unit@") @@ -380,8 +546,8 @@ void sisso::feature_creation::node::registerAbsDiffNode() void (AbsDiffNode::*set_test_value_no_param)(int, bool) const = &AbsDiffNode::set_test_value; std::string (AbsDiffNode::*expr_no_param)() const = &AbsDiffNode::expr; - class_<AbsDiffNode, bases<OperatorNode<2>>>("AbsDiffNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_abs_diff_node_set_value@") + class_<AbsDiffNode, bases<OperatorNode<2>>>("AbsDiffNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_abs_diff_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_abs_diff_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_abs_diff_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_abs_diff_node_expr@") .add_property("unit", &AbsDiffNode::unit, "@DocString_abs_diff_node_unit@") @@ -395,8 +561,8 @@ void sisso::feature_creation::node::registerAbsNode() void (AbsNode::*set_test_value_no_param)(int, bool) const = &AbsNode::set_test_value; std::string (AbsNode::*expr_no_param)() const = &AbsNode::expr; - class_<AbsNode, bases<OperatorNode<1>>>("AbsNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_abs_node_set_value@") + class_<AbsNode, bases<OperatorNode<1>>>("AbsNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_abs_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_abs_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_abs_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_abs_node_expr@") .add_property("unit", &AbsNode::unit, "@DocString_abs_node_unit@") @@ -410,8 +576,8 @@ void sisso::feature_creation::node::registerInvNode() void (InvNode::*set_test_value_no_param)(int, bool) const = &InvNode::set_test_value; std::string (InvNode::*expr_no_param)() const = &InvNode::expr; - class_<InvNode, bases<OperatorNode<1>>>("InvNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_inv_node_set_value@") + class_<InvNode, bases<OperatorNode<1>>>("InvNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_inv_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_inv_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_inv_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_inv_node_expr@") .add_property("unit", &InvNode::unit, "@DocString_inv_node_unit@") @@ -425,8 +591,8 @@ void sisso::feature_creation::node::registerLogNode() void (LogNode::*set_test_value_no_param)(int, bool) const = &LogNode::set_test_value; std::string (LogNode::*expr_no_param)() const = &LogNode::expr; - class_<LogNode, bases<OperatorNode<1>>>("LogNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_log_node_set_value@") + class_<LogNode, bases<OperatorNode<1>>>("LogNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_log_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_log_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_log_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_log_node_expr@") .add_property("unit", &LogNode::unit, "@DocString_log_node_unit@") @@ -440,8 +606,8 @@ void sisso::feature_creation::node::registerExpNode() void (ExpNode::*set_test_value_no_param)(int, bool) const = &ExpNode::set_test_value; std::string (ExpNode::*expr_no_param)() const = &ExpNode::expr; - class_<ExpNode, bases<OperatorNode<1>>>("ExpNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_exp_node_set_value@") + class_<ExpNode, bases<OperatorNode<1>>>("ExpNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_exp_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_exp_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_exp_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_exp_node_expr@") .add_property("unit", &ExpNode::unit, "@DocString_exp_node_unit@") @@ -455,8 +621,8 @@ void sisso::feature_creation::node::registerNegExpNode() void (NegExpNode::*set_test_value_no_param)(int, bool) const = &NegExpNode::set_test_value; std::string (NegExpNode::*expr_no_param)() const = &NegExpNode::expr; - class_<NegExpNode, bases<OperatorNode<1>>>("NegExpNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_neg_exp_node_set_value@") + class_<NegExpNode, bases<OperatorNode<1>>>("NegExpNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_neg_exp_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_neg_exp_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_neg_exp_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_neg_exp_node_expr@") .add_property("unit", &NegExpNode::unit, "@DocString_neg_exp_node_unit@") @@ -470,8 +636,8 @@ void sisso::feature_creation::node::registerSinNode() void (SinNode::*set_test_value_no_param)(int, bool) const = &SinNode::set_test_value; std::string (SinNode::*expr_no_param)() const = &SinNode::expr; - class_<SinNode, bases<OperatorNode<1>>>("SinNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sin_node_set_value@") + class_<SinNode, bases<OperatorNode<1>>>("SinNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sin_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sin_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sin_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sin_node_expr@") .add_property("unit", &SinNode::unit, "@DocString_sin_node_unit@") @@ -485,8 +651,8 @@ void sisso::feature_creation::node::registerCosNode() void (CosNode::*set_test_value_no_param)(int, bool) const = &CosNode::set_test_value; std::string (CosNode::*expr_no_param)() const = &CosNode::expr; - class_<CosNode, bases<OperatorNode<1>>>("CosNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_cos_node_set_value@") + class_<CosNode, bases<OperatorNode<1>>>("CosNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_cos_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_cos_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_cos_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_cos_node_expr@") .add_property("unit", &CosNode::unit, "@DocString_cos_node_unit@") @@ -500,8 +666,8 @@ void sisso::feature_creation::node::registerCbNode() void (CbNode::*set_test_value_no_param)(int, bool) const = &CbNode::set_test_value; std::string (CbNode::*expr_no_param)() const = &CbNode::expr; - class_<CbNode, bases<OperatorNode<1>>>("CbNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_cb_node_set_value@") + class_<CbNode, bases<OperatorNode<1>>>("CbNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_cb_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_cb_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_cb_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_cb_node_expr@") .add_property("unit", &CbNode::unit, "@DocString_cb_node_unit@") @@ -515,8 +681,8 @@ void sisso::feature_creation::node::registerCbrtNode() void (CbrtNode::*set_test_value_no_param)(int, bool) const = &CbrtNode::set_test_value; std::string (CbrtNode::*expr_no_param)() const = &CbrtNode::expr; - class_<CbrtNode, bases<OperatorNode<1>>>("CbrtNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_cbrt_node_set_value@") + class_<CbrtNode, bases<OperatorNode<1>>>("CbrtNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_cbrt_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_cbrt_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_cbrt_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_cbrt_node_expr@") .add_property("unit", &CbrtNode::unit, "@DocString_cbrt_node_unit@") @@ -530,8 +696,8 @@ void sisso::feature_creation::node::registerSqNode() void (SqNode::*set_test_value_no_param)(int, bool) const = &SqNode::set_test_value; std::string (SqNode::*expr_no_param)() const = &SqNode::expr; - class_<SqNode, bases<OperatorNode<1>>>("SqNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sq_node_set_value@") + class_<SqNode, bases<OperatorNode<1>>>("SqNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sq_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sq_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sq_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sq_node_expr@") .add_property("unit", &SqNode::unit, "@DocString_sq_node_unit@") @@ -545,8 +711,8 @@ void sisso::feature_creation::node::registerSqrtNode() void (SqrtNode::*set_test_value_no_param)(int, bool) const = &SqrtNode::set_test_value; std::string (SqrtNode::*expr_no_param)() const = &SqrtNode::expr; - class_<SqrtNode, bases<OperatorNode<1>>>("SqrtNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sqrt_node_set_value@") + class_<SqrtNode, bases<OperatorNode<1>>>("SqrtNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sqrt_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sqrt_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sqrt_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sqrt_node_expr@") .add_property("unit", &SqrtNode::unit, "@DocString_sqrt_node_unit@") @@ -560,8 +726,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (SixPowNode::*set_test_value_no_param)(int, bool) const = &SixPowNode::set_test_value; std::string (SixPowNode::*expr_no_param)() const = &SixPowNode::expr; - class_<SixPowNode, bases<OperatorNode<1>>>("SixPowNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_six_pow_node_set_value@") + class_<SixPowNode, bases<OperatorNode<1>>>("SixPowNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_six_pow_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_six_pow_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_six_pow_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_six_pow_node_expr@") .add_property("unit", &SixPowNode::unit, "@DocString_six_pow_node_unit@") @@ -575,8 +741,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (AddParamNode::*set_test_value_no_param)(int, bool) const = &AddParamNode::set_test_value; std::string (AddParamNode::*expr_no_param)() const = &AddParamNode::expr; - class_<AddParamNode, bases<AddNode>>("AddParamNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_add_param_node_set_value@") + class_<AddParamNode, bases<AddNode>>("AddParamNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_add_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_add_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_add_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_add_param_node_expr@") .add_property("unit", &AddParamNode::unit, "@DocString_add_param_node_unit@") @@ -590,8 +756,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (SubParamNode::*set_test_value_no_param)(int, bool) const = &SubParamNode::set_test_value; std::string (SubParamNode::*expr_no_param)() const = &SubParamNode::expr; - class_<SubParamNode, bases<SubNode>>("SubParamNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sub_param_node_set_value@") + class_<SubParamNode, bases<SubNode>>("SubParamNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sub_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sub_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sub_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sub_param_node_expr@") .add_property("unit", &SubParamNode::unit, "@DocString_sub_param_node_unit@") @@ -605,8 +771,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (DivParamNode::*set_test_value_no_param)(int, bool) const = &DivParamNode::set_test_value; std::string (DivParamNode::*expr_no_param)() const = &DivParamNode::expr; - class_<DivParamNode, bases<DivNode>>("DivParamNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_div_param_node_set_value@") + class_<DivParamNode, bases<DivNode>>("DivParamNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_div_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_div_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_div_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_div_param_node_expr@") .add_property("unit", &DivParamNode::unit, "@DocString_div_param_node_unit@") @@ -620,8 +786,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (MultParamNode::*set_test_value_no_param)(int, bool) const = &MultParamNode::set_test_value; std::string (MultParamNode::*expr_no_param)() const = &MultParamNode::expr; - class_<MultParamNode, bases<MultNode>>("MultParamNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_mult_param_node_set_value@") + class_<MultParamNode, bases<MultNode>>("MultParamNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_mult_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_mult_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_mult_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_mult_param_node_expr@") .add_property("unit", &MultParamNode::unit, "@DocString_mult_param_node_unit@") @@ -635,8 +801,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (AbsDiffParamNode::*set_test_value_no_param)(int, bool) const = &AbsDiffParamNode::set_test_value; std::string (AbsDiffParamNode::*expr_no_param)() const = &AbsDiffParamNode::expr; - class_<AbsDiffParamNode, bases<AbsDiffNode>>("AbsDiffParamNode", init<node_ptr, node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_abs_diff_param_node_set_value@") + class_<AbsDiffParamNode, bases<AbsDiffNode>>("AbsDiffParamNode", init<node_ptr, node_ptr, int, double, double>((arg("feat_1"), arg("feat_2"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_abs_diff_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_abs_diff_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_abs_diff_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_abs_diff_param_node_expr@") .add_property("unit", &AbsDiffParamNode::unit, "@DocString_abs_diff_param_node_unit@") @@ -650,8 +816,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (AbsParamNode::*set_test_value_no_param)(int, bool) const = &AbsParamNode::set_test_value; std::string (AbsParamNode::*expr_no_param)() const = &AbsParamNode::expr; - class_<AbsParamNode, bases<AbsNode>>("AbsParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_abs_param_node_set_value@") + class_<AbsParamNode, bases<AbsNode>>("AbsParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_abs_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_abs_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_abs_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_abs_param_node_expr@") .add_property("unit", &AbsParamNode::unit, "@DocString_abs_param_node_unit@") @@ -665,8 +831,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (InvParamNode::*set_test_value_no_param)(int, bool) const = &InvParamNode::set_test_value; std::string (InvParamNode::*expr_no_param)() const = &InvParamNode::expr; - class_<InvParamNode, bases<InvNode>>("InvParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_inv_param_node_set_value@") + class_<InvParamNode, bases<InvNode>>("InvParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_inv_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_inv_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_inv_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_inv_param_node_expr@") .add_property("unit", &InvParamNode::unit, "@DocString_inv_param_node_unit@") @@ -680,8 +846,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (LogParamNode::*set_test_value_no_param)(int, bool) const = &LogParamNode::set_test_value; std::string (LogParamNode::*expr_no_param)() const = &LogParamNode::expr; - class_<LogParamNode, bases<LogNode>>("LogParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_log_param_node_set_value@") + class_<LogParamNode, bases<LogNode>>("LogParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_log_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_log_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_log_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_log_param_node_expr@") .add_property("unit", &LogParamNode::unit, "@DocString_log_param_node_unit@") @@ -695,8 +861,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (ExpParamNode::*set_test_value_no_param)(int, bool) const = &ExpParamNode::set_test_value; std::string (ExpParamNode::*expr_no_param)() const = &ExpParamNode::expr; - class_<ExpParamNode, bases<ExpNode>>("ExpParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_exp_param_node_set_value@") + class_<ExpParamNode, bases<ExpNode>>("ExpParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_exp_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_exp_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_exp_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_exp_param_node_expr@") .add_property("unit", &ExpParamNode::unit, "@DocString_exp_param_node_unit@") @@ -710,8 +876,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (NegExpParamNode::*set_test_value_no_param)(int, bool) const = &NegExpParamNode::set_test_value; std::string (NegExpParamNode::*expr_no_param)() const = &NegExpParamNode::expr; - class_<NegExpParamNode, bases<NegExpNode>>("NegExpParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_neg_exp_param_node_set_value@") + class_<NegExpParamNode, bases<NegExpNode>>("NegExpParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_neg_exp_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_neg_exp_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_neg_exp_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_neg_exp_param_node_expr@") .add_property("unit", &NegExpParamNode::unit, "@DocString_neg_exp_param_node_unit@") @@ -725,8 +891,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (SinParamNode::*set_test_value_no_param)(int, bool) const = &SinParamNode::set_test_value; std::string (SinParamNode::*expr_no_param)() const = &SinParamNode::expr; - class_<SinParamNode, bases<SinNode>>("SinParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sin_param_node_set_value@") + class_<SinParamNode, bases<SinNode>>("SinParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sin_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sin_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sin_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sin_param_node_expr@") .add_property("unit", &SinParamNode::unit, "@DocString_sin_param_node_unit@") @@ -740,8 +906,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (CosParamNode::*set_test_value_no_param)(int, bool) const = &CosParamNode::set_test_value; std::string (CosParamNode::*expr_no_param)() const = &CosParamNode::expr; - class_<CosParamNode, bases<CosNode>>("CosParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_cos_param_node_set_value@") + class_<CosParamNode, bases<CosNode>>("CosParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_cos_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_cos_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_cos_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_cos_param_node_expr@") .add_property("unit", &CosParamNode::unit, "@DocString_cos_param_node_unit@") @@ -755,8 +921,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (CbParamNode::*set_test_value_no_param)(int, bool) const = &CbParamNode::set_test_value; std::string (CbParamNode::*expr_no_param)() const = &CbParamNode::expr; - class_<CbParamNode, bases<CbNode>>("CbParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_cb_param_node_set_value@") + class_<CbParamNode, bases<CbNode>>("CbParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_cb_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_cb_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_cb_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_cb_param_node_expr@") .add_property("unit", &CbParamNode::unit, "@DocString_cb_param_node_unit@") @@ -770,8 +936,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (CbrtParamNode::*set_test_value_no_param)(int, bool) const = &CbrtParamNode::set_test_value; std::string (CbrtParamNode::*expr_no_param)() const = &CbrtParamNode::expr; - class_<CbrtParamNode, bases<CbrtNode>>("CbrtParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_cbrt_param_node_set_value@") + class_<CbrtParamNode, bases<CbrtNode>>("CbrtParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_cbrt_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_cbrt_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_cbrt_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_cbrt_param_node_expr@") .add_property("unit", &CbrtParamNode::unit, "@DocString_cbrt_param_node_unit@") @@ -785,8 +951,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (SqParamNode::*set_test_value_no_param)(int, bool) const = &SqParamNode::set_test_value; std::string (SqParamNode::*expr_no_param)() const = &SqParamNode::expr; - class_<SqParamNode, bases<SqNode>>("SqParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sq_param_node_set_value@") + class_<SqParamNode, bases<SqNode>>("SqParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sq_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sq_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sq_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sq_param_node_expr@") .add_property("unit", &SqParamNode::unit, "@DocString_sq_param_node_unit@") @@ -800,8 +966,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (SqrtParamNode::*set_test_value_no_param)(int, bool) const = &SqrtParamNode::set_test_value; std::string (SqrtParamNode::*expr_no_param)() const = &SqrtParamNode::expr; - class_<SqrtParamNode, bases<SqrtNode>>("SqrtParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_sqrt_param_node_set_value@") + class_<SqrtParamNode, bases<SqrtNode>>("SqrtParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_sqrt_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_sqrt_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_sqrt_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_sqrt_param_node_expr@") .add_property("unit", &SqrtParamNode::unit, "@DocString_sqrt_param_node_unit@") @@ -815,8 +981,8 @@ void sisso::feature_creation::node::registerSixPowNode() void (SixPowParamNode::*set_test_value_no_param)(int, bool) const = &SixPowParamNode::set_test_value; std::string (SixPowParamNode::*expr_no_param)() const = &SixPowParamNode::expr; - class_<SixPowParamNode, bases<SixPowNode>>("SixPowParamNode", init<node_ptr, int, double, double>()) - .def("set_value", set_value_no_param, "@DocString_six_pow_param_node_set_value@") + class_<SixPowParamNode, bases<SixPowNode>>("SixPowParamNode", init<node_ptr, int, double, double>((arg("feat"), arg("feat_ind"), arg("min_abs_feat_val"), arg("max_abs_feat_val")), "@DocString_six_pow_param_node_init@")) + .def("set_value", set_value_no_param, (arg("offset"), arg("for_comp")), "@DocString_six_pow_param_node_set_value@") .def("set_test_value", set_test_value_no_param, "@DocString_six_pow_param_node_set_test_value@") .add_property("expr", expr_no_param, "@DocString_six_pow_param_node_expr@") .add_property("unit", &SixPowParamNode::unit, "@DocString_six_pow_param_node_unit@") @@ -835,13 +1001,13 @@ void sisso::descriptor_identifier::registerModel() double (Model::*eval_dict)(py::dict) const = &Model::eval_py; class_<sisso::descriptor_identifier::Model_Wrap, boost::noncopyable>("Model", no_init) - .def("eval_many", eval_many_dict) - .def("eval_many", eval_many_ndarr) - .def("eval", eval_ndarr) - .def("eval", eval_list) - .def("eval", eval_dict) - .def("write_matlab_fxn", &Model::write_matlab_fxn) - .def("to_file", &Model::to_file, "@DocString_model_to_file") + .def("eval", eval_ndarr, (arg("x_in")), "@DocString_model_eval_arr@") + .def("eval", eval_list, (arg("x_in")), "@DocString_model_eval_list@") + .def("eval", eval_dict, (arg("x_in")), "@DocString_model_eval_dict@") + .def("eval_many", eval_many_ndarr, (arg("x_in")), "@DocString_model_eval_many_arr@") + .def("eval_many", eval_many_dict, (arg("x_in")), "@DocString_model_eval_many_dict@") + .def("write_matlab_fxn", &Model::write_matlab_fxn, (arg("fxn_filename")), "@DocString_model_to_matlab@") + .def("to_file", &Model::to_file, (arg("filename"), arg("train")), "@DocString_model_to_file@") .add_property("n_samp_train", &Model::n_samp_train, "@DocString_model_n_samp_train@") .add_property("n_samp_test", &Model::n_samp_test, "@DocString_model_n_samp_test@") .add_property("n_dim", &Model::n_dim, "@DocString_model_n_dim@") @@ -865,8 +1031,8 @@ void sisso::descriptor_identifier::registerModel() void sisso::descriptor_identifier::registerModelRegressor() { - class_<ModelRegressor, bases<Model>>("ModelRegressor", init<std::string>()) - .def(init<std::string, std::string>()) + class_<ModelRegressor, bases<Model>>("ModelRegressor", init<std::string>((arg("train_file")), "@DocString_model_reg_init_train@")) + .def(init<std::string, std::string>((arg("train_file"), arg("test_file")), "@DocString_model_reg_init_test_train@")) .def("__str__", &ModelRegressor::toString, "@DocString_model_reg_str@") .def("__repr__", &ModelRegressor::toString, "@DocString_model_reg_str@") .add_property("latex_str", &ModelRegressor::toLatexString, "@DocString_model_reg_latex_str@") @@ -893,8 +1059,8 @@ void sisso::descriptor_identifier::registerModelRegressor() void sisso::descriptor_identifier::registerModelLogRegressor() { - class_<ModelLogRegressor, bases<ModelRegressor>>("ModelLogRegressor", init<std::string>()) - .def(init<std::string, std::string>()) + class_<ModelLogRegressor, bases<ModelRegressor>>("ModelLogRegressor", init<std::string>((arg("train_file")), "@DocString_model_log_reg_init_train@")) + .def(init<std::string, std::string>((arg("train_file"), arg("test_file")), "@DocString_model_log_reg_init_test_train@")) .def("__str__", &ModelLogRegressor::toString, "@DocString_model_log_reg_str@") .def("__repr__", &ModelLogRegressor::toString, "@DocString_model_log_reg_str@") .add_property("latex_str", &ModelLogRegressor::toLatexString, "@DocString_model_log_reg_latex_str@") @@ -903,10 +1069,10 @@ void sisso::descriptor_identifier::registerModelLogRegressor() void sisso::descriptor_identifier::registerModelClassifier() { - class_<ModelClassifier, bases<Model>>("ModelClassifier", init<std::string>()) - .def(init<std::string, std::string>()) - .def(init<ModelClassifier, py::list, np::ndarray, np::ndarray>()) - .def(init<ModelClassifier, np::ndarray, np::ndarray, np::ndarray>()) + class_<ModelClassifier, bases<Model>>("ModelClassifier", init<std::string>((arg("train_file")), "@DocString_model_class_init_train@")) + .def(init<std::string, std::string>((arg("train_file"), arg("test_file")), "@DocString_model_class_init_test_train@")) + .def(init<ModelClassifier, py::list, np::ndarray, np::ndarray>((arg("o"), arg("new_coefs"), arg("prop_train_est"), arg("prop_test_est")), "@DocString_model_class_init_new_coefs_list@")) + .def(init<ModelClassifier, np::ndarray, np::ndarray, np::ndarray>((arg("o"), arg("new_coefs"), arg("prop_train_est"), arg("prop_test_est")), "@DocString_model_class_init_new_coefs_arr@")) .def("__str__", &ModelClassifier::toString, "@DocString_model_class_str@") .def("__repr__", &ModelClassifier::toString, "@DocString_model_class_str@") .add_property("latex_str", &ModelClassifier::toLatexString, "@DocString_model_class_latex_str@") @@ -936,26 +1102,25 @@ void sisso::descriptor_identifier::registerSISSO_DI() void sisso::descriptor_identifier::registerSISSORegressor() { - class_<SISSORegressor, bases<SISSO_DI>>("SISSORegressor", init<std::shared_ptr<FeatureSpace>, std::string, Unit, np::ndarray, np::ndarray, py::list, py::list, py::list, int, int, int, optional<bool>>()) + class_<SISSORegressor, bases<SISSO_DI>>("SISSORegressor", init<std::shared_ptr<FeatureSpace>, std::string, Unit, np::ndarray, np::ndarray, py::list, py::list, py::list, int, int, int, optional<bool>>((arg("feat_space"),arg("prop_label"),arg("prop_unit"),arg("prop"),arg("prop_test"),arg("task_sizes_train"),arg("task_sizes_test"),arg("leave_out_inds"),arg("n_dim"),arg("n_residual"),arg("n_models_store"),arg("fix_intercept")), "@DocString_model_reg_init_arr@")) + .def(init<std::shared_ptr<FeatureSpace>, std::string, Unit, py::list, py::list, py::list, py::list, py::list, int, int, int, optional<bool>>((arg("feat_space"),arg("prop_label"),arg("prop_unit"),arg("prop"),arg("prop_test"),arg("task_sizes_train"),arg("task_sizes_test"),arg("leave_out_inds"),arg("n_dim"),arg("n_residual"),arg("n_models_store"),arg("fix_intercept")), "@DocString_model_reg_init_list@")) .def("fit", &SISSORegressor::fit, "@DocString_sisso_reg_fit@") - .def(init<std::shared_ptr<FeatureSpace>, std::string, Unit, py::list, py::list, py::list, py::list, py::list, int, int, int, optional<bool>>()) .add_property("models", &SISSORegressor::models_py, "@DocString_sisso_reg_models_py@") ; } void sisso::descriptor_identifier::registerSISSOLogRegressor() { - class_<SISSOLogRegressor, bases<SISSORegressor>>("SISSOLogRegressor", init<std::shared_ptr<FeatureSpace>, std::string, Unit, np::ndarray, np::ndarray, py::list, py::list, py::list, int, int, int, optional<bool>>()) - .def("fit", &SISSOLogRegressor::fit, "@DocString_sisso_reg_fit@") - .def(init<std::shared_ptr<FeatureSpace>, std::string, Unit, py::list, py::list, py::list, py::list, py::list, int, int, int, optional<bool>>()) + class_<SISSOLogRegressor, bases<SISSORegressor>>("SISSOLogRegressor", init<std::shared_ptr<FeatureSpace>, std::string, Unit, np::ndarray, np::ndarray, py::list, py::list, py::list, int, int, int, optional<bool>>((arg("feat_space"),arg("prop_label"),arg("prop_unit"),arg("prop"),arg("prop_test"),arg("task_sizes_train"),arg("task_sizes_test"),arg("leave_out_inds"),arg("n_dim"),arg("n_residual"),arg("n_models_store"),arg("fix_intercept")), "@DocString_model_log_reg_init_arr@")) + .def(init<std::shared_ptr<FeatureSpace>, std::string, Unit, py::list, py::list, py::list, py::list, py::list, int, int, int, optional<bool>>((arg("feat_space"),arg("prop_label"),arg("prop_unit"),arg("prop"),arg("prop_test"),arg("task_sizes_train"),arg("task_sizes_test"),arg("leave_out_inds"),arg("n_dim"),arg("n_residual"),arg("n_models_store"),arg("fix_intercept")), "@DocString_model_log_reg_init_list@")) .add_property("models", &SISSOLogRegressor::models_log_reg_py, "@DocString_sisso_log_reg_models_py@") ; } void sisso::descriptor_identifier::registerSISSOClassifier() { - class_<SISSOClassifier, bases<SISSO_DI>>("SISSOClassifier", init<std::shared_ptr<FeatureSpace>, std::string, Unit, np::ndarray, np::ndarray, py::list, py::list, py::list, int, int, int>()) - .def(init<std::shared_ptr<FeatureSpace>, std::string, Unit, py::list, py::list, py::list, py::list, py::list, int, int, int>()) + class_<SISSOClassifier, bases<SISSO_DI>>("SISSOClassifier", init<std::shared_ptr<FeatureSpace>, std::string, Unit, np::ndarray, np::ndarray, py::list, py::list, py::list, int, int, int>((arg("feat_space"), arg("prop_label"), arg("prop_unit"), arg("prop"), arg("prop_test"), arg("task_sizes_train"), arg("task_sizes_test"), arg("leave_out_inds"), arg("n_dim"), arg("n_residual"), arg("n_models_store")), "@DocString_sisso_class_init_arr@")) + .def(init<std::shared_ptr<FeatureSpace>, std::string, Unit, py::list, py::list, py::list, py::list, py::list, int, int, int>((arg("feat_space"), arg("prop_label"), arg("prop_unit"), arg("prop"), arg("prop_test"), arg("task_sizes_train"), arg("task_sizes_test"), arg("leave_out_inds"), arg("n_dim"), arg("n_residual"), arg("n_models_store")), "@DocString_sisso_class_init_list@")) .def("fit", &SISSOClassifier::fit, "@DocString_sisso_class_fit@") .add_property("models", &SISSOClassifier::models_py, "@DocString_sisso_class_models_py@") ; diff --git a/src/python/bindings_docstring_keyed.hpp b/src/python/bindings_docstring_keyed.hpp index c9d2878b..71752347 100644 --- a/src/python/bindings_docstring_keyed.hpp +++ b/src/python/bindings_docstring_keyed.hpp @@ -320,20 +320,12 @@ namespace sisso py::class_<OperatorNodeWrap<N>, py::bases<Node>, boost::noncopyable>("OperatorNode") .def("is_nan", &OperatorNode<N>::is_nan, "@DocString_op_node_is_nan@") .def("is_const", &OperatorNode<N>::is_const, "@DocString_op_node_is_const@") - .def("set_value", py::pure_virtual(&OperatorNode<N>::set_value), "@DocString_op_node_set_value@") - .def("set_test_value", py::pure_virtual(&OperatorNode<N>::set_test_value), "@DocString_op_node_set_test_value@") - .def("rung", py::pure_virtual(&OperatorNode<N>::rung), "@DocString_op_node_rung@") - .def("expr", py::pure_virtual(&OperatorNode<N>::expr), "@DocString_op_node_expr@") - .def("unit", py::pure_virtual(&OperatorNode<N>::unit), "@DocString_op_node_unit@") .add_property("n_feats", &OperatorNode<N>::n_feats, "@DocString_op_node_n_feats@") - .add_property("feat", &OperatorNode<N>::feat, "@DocString_op_node_feat@") - .add_property("n_leaves", &OperatorNode<N>::n_leaves) + .add_property("feat", &OperatorNode<N>::feat, (py::arg("ind")), "@DocString_op_node_feat@") + .add_property("n_leaves", &OperatorNode<N>::n_leaves, (py::arg("cur_n_leaves")), "@DocString_op_node_n_leaves@") ; } #else - /** - * @brief Register the OperatorNode for accessing the object via python - */ template<int N> static void registerOperatorNode() { @@ -342,8 +334,6 @@ namespace sisso py::class_<OperatorNodeWrap<N>, py::bases<Node>, boost::noncopyable>("OperatorNode") .def("is_nan", &OperatorNode<N>::is_nan, "@DocString_op_node_is_nan@") .def("is_const", &OperatorNode<N>::is_const, "@DocString_op_node_is_const@") - .def("rung", py::pure_virtual(&OperatorNode<N>::rung), "@DocString_op_node_rung@") - .def("unit", py::pure_virtual(&OperatorNode<N>::unit), "@DocString_op_node_unit@") .def("get_parameters", py::pure_virtual(&OperatorNode<N>::get_parameters), "@DocString_op_node_get_params@") .def("set_parameters", set_params_arr, "@DocString_op_node_set_param_arr@") .def("set_parameters", set_params_list, "@DocString_op_node_set_param_list@") @@ -352,6 +342,7 @@ namespace sisso .add_property("n_leaves", &OperatorNode<N>::n_leaves) ; } + #endif /** diff --git a/src/python/feature_creation/FeatureSpace.cpp b/src/python/feature_creation/FeatureSpace.cpp index c31f8f7b..c0e9b7e7 100644 --- a/src/python/feature_creation/FeatureSpace.cpp +++ b/src/python/feature_creation/FeatureSpace.cpp @@ -6,7 +6,6 @@ FeatureSpace::FeatureSpace( py::list allowed_ops, py::list allowed_param_ops, py::list prop, - py::list task_sizes, std::string project_type, int max_phi, int n_sis_select, @@ -26,7 +25,7 @@ FeatureSpace::FeatureSpace( _allowed_ops(python_conv_utils::from_list<std::string>(allowed_ops)), _prop(python_conv_utils::from_list<double>(prop)), _scores(py::len(phi_0), 0.0), - _task_sizes(python_conv_utils::from_list<int>(task_sizes)), + _task_sizes(node_value_arrs::TASK_SZ_TRAIN), _start_gen(1, 0), _feature_space_file("feature_space/selected_features.txt"), _feature_space_summary_file("feature_space/SIS_summary.txt"), @@ -52,7 +51,6 @@ FeatureSpace::FeatureSpace( py::list allowed_ops, py::list allowed_param_ops, np::ndarray prop, - py::list task_sizes, std::string project_type, int max_phi, int n_sis_select, @@ -72,7 +70,7 @@ FeatureSpace::FeatureSpace( _allowed_ops(python_conv_utils::from_list<std::string>(allowed_ops)), _prop(python_conv_utils::from_ndarray<double>(prop)), _scores(py::len(phi_0), 0.0), - _task_sizes(python_conv_utils::from_list<int>(task_sizes)), + _task_sizes(node_value_arrs::TASK_SZ_TRAIN), _start_gen(1, 0), _feature_space_file("feature_space/selected_features.txt"), _feature_space_summary_file("feature_space/SIS_summary.txt"), @@ -97,7 +95,6 @@ FeatureSpace::FeatureSpace( py::list phi_0, py::list allowed_ops, py::list prop, - py::list task_sizes, std::string project_type, int max_phi, int n_sis_select, @@ -112,7 +109,7 @@ FeatureSpace::FeatureSpace( _allowed_ops(python_conv_utils::from_list<std::string>(allowed_ops)), _prop(python_conv_utils::from_list<double>(prop)), _scores(py::len(phi_0), 0.0), - _task_sizes(python_conv_utils::from_list<int>(task_sizes)), + _task_sizes(node_value_arrs::TASK_SZ_TRAIN), _start_gen(1, 0), _feature_space_file("feature_space/selected_features.txt"), _feature_space_summary_file("feature_space/SIS_summary.txt"), @@ -137,7 +134,6 @@ FeatureSpace::FeatureSpace( py::list phi_0, py::list allowed_ops, np::ndarray prop, - py::list task_sizes, std::string project_type, int max_phi, int n_sis_select, @@ -152,7 +148,7 @@ FeatureSpace::FeatureSpace( _allowed_ops(python_conv_utils::from_list<std::string>(allowed_ops)), _prop(python_conv_utils::from_ndarray<double>(prop)), _scores(py::len(phi_0), 0.0), - _task_sizes(python_conv_utils::from_list<int>(task_sizes)), + _task_sizes(node_value_arrs::TASK_SZ_TRAIN), _start_gen(1, 0), _feature_space_file("feature_space/selected_features.txt"), _feature_space_summary_file("feature_space/SIS_summary.txt"), diff --git a/src/python/feature_creation/node_utils.hpp b/src/python/feature_creation/node_utils.hpp index 149e3e3d..1adb9ec3 100644 --- a/src/python/feature_creation/node_utils.hpp +++ b/src/python/feature_creation/node_utils.hpp @@ -13,6 +13,7 @@ namespace py = boost::python; namespace str2node { + // DocString: node_utils_phi_sel_from_file /** * @brief Convert a feature_space/selected_features.txt into a phi_selected; * @details Read in the file to get the postfix expressions and regenerate the selected features using phi_0 diff --git a/src/utils/string_utils.hpp b/src/utils/string_utils.hpp index 28a4ff59..5a3b4583 100644 --- a/src/utils/string_utils.hpp +++ b/src/utils/string_utils.hpp @@ -35,6 +35,7 @@ namespace str_utils */ std::string latexify(const std::string str); + // DocString: str_utils_matlabify /** * @brief Convert a string into a matlab valid name * -- GitLab