version 0.1

README.md

@@ -9,6 +9,12 @@ version: 2.3.0/1.53f
 ## Plugins
 Grid/Collection Stiching version: 1.2
 
+issues: snake order argument has white space in it
+
+```
+^Right & Down                $
+```
+
 ## Running headless script
 
 ```
@@ -20,4 +26,16 @@ Grid/Collection Stiching version: 1.2
 [issue](https://forum.image.sc/t/converting-16-bit-signed-tiffs-to-16-bit-unsigned/5847/3) signed vs unsigned 16 bit images
 
 ## Microscopy Image Stitching Tool (MIST)
-[MIST](https://github.com/USNISTGOV/MIST/wiki/Install-Guide)
\ No newline at end of file
+[MIST](https://github.com/USNISTGOV/MIST/wiki/Install-Guide)
+
+## Pipeline
+
+* even stack = "right & down"
+* odd stack = "right & up"
+* alternate based on the stack number
+
+## Run
+
+```
+Plugins > Macros > Run ... > ScanImageStitching.ijm
+```
\ No newline at end of file