Commit afcabb43 authored by Georgi Tushev's avatar Georgi Tushev
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fix tables

parent b57da632
ERCC 2and3Hc2 2and3Hc3 4and5Hc2 4and5Hc3 6and7Hc2 6and7Hc3 80SHc2 80SHc3 InputHc2 InputHc3 bigger7Hc2 bigger7Hc3
ERCC-00002 9140 12382 15199 9748 11895 9531 3575 6079 31329 26857 26377 9934
ERCC-00003 382 456 632 280 374 300 106 152 1438 1280 957 233
ERCC-00004 3920 4865 6757 3681 4579 3910 1274 1961 13739 11403 11893 3558
ERCC-00009 346 439 551 392 464 401 143 220 1193 992 1055 374
ERCC-00012 7 16 21 24 24 7 3 1 5 9 17 8
ERCC-00013 6 2 3 4 5 2 0 2 2 5 4 3
ERCC-00014 1 0 1 1 2 2 0 1 2 4 0 4
ERCC-00016 0 2 0 2 3 0 0 0 1 2 0 0
ERCC-00017 9 9 7 19 8 6 1 4 5 2 6 3
ERCC-00019 27 29 43 23 43 43 10 14 73 51 48 28
ERCC-00022 114 148 170 111 127 100 35 70 345 284 372 150
ERCC-00024 6 4 4 1 2 4 2 4 4 5 9 1
ERCC-00025 28 40 44 37 35 20 11 20 83 77 109 31
ERCC-00028 4 7 3 6 6 0 2 4 8 7 6 3
ERCC-00031 0 0 0 1 0 0 0 0 3 1 2 0
ERCC-00033 1 1 0 1 0 0 2 0 5 2 4 0
ERCC-00034 21 22 22 16 15 12 13 14 37 19 19 3
ERCC-00035 39 51 63 39 54 51 8 23 134 102 119 41
ERCC-00039 4 2 3 1 0 0 0 1 4 6 4 3
ERCC-00040 3 5 3 1 5 3 0 0 1 2 4 4
ERCC-00042 256 349 443 261 314 242 94 137 880 806 881 280
ERCC-00043 193 238 305 118 141 105 36 74 767 632 335 86
ERCC-00044 57 72 88 48 65 60 21 27 178 152 166 44
ERCC-00046 2446 2708 4260 1997 2564 2193 772 1024 9161 7814 7827 1669
ERCC-00048 3 4 4 1 10 10 1 2 4 0 13 1
ERCC-00051 17 17 34 11 18 18 5 6 77 51 63 18
ERCC-00053 13 12 33 13 9 9 2 5 55 57 28 10
ERCC-00054 10 16 16 18 12 14 1 10 31 31 47 22
ERCC-00058 2 4 2 3 3 4 1 0 8 4 3 3
ERCC-00059 3 10 20 7 7 3 3 6 31 25 34 14
ERCC-00060 167 238 328 163 181 152 63 80 677 534 560 134
ERCC-00062 43 55 81 41 53 29 11 11 161 161 77 31
ERCC-00067 3 0 4 4 4 4 2 2 6 9 3 1
ERCC-00069 5 7 5 3 3 2 1 2 2 1 7 4
ERCC-00071 41 56 71 37 53 31 15 31 129 105 100 35
ERCC-00073 0 0 3 0 2 0 0 2 2 2 2 1
ERCC-00074 13302 15432 24005 12680 15608 13132 4567 6799 47394 40293 46083 13560
ERCC-00075 0 3 1 2 2 2 0 1 1 1 3 0
ERCC-00076 100 138 170 137 178 107 36 66 389 324 387 115
ERCC-00077 5 11 14 3 5 5 1 4 13 9 14 3
ERCC-00078 11 25 14 14 18 16 5 8 43 35 37 14
ERCC-00079 25 41 45 33 34 30 14 27 102 86 113 42
ERCC-00081 0 1 0 1 1 4 1 0 0 1 1 0
ERCC-00083 0 3 6 3 6 2 0 0 3 1 4 3
ERCC-00084 8 6 8 9 2 4 3 7 36 19 17 4
ERCC-00085 3 3 1 1 5 3 0 0 5 8 7 1
ERCC-00086 3 9 7 6 7 11 0 2 2 1 8 6
ERCC-00092 123 156 199 105 172 104 48 59 429 315 396 114
ERCC-00095 115 129 191 121 135 106 41 57 395 346 386 121
ERCC-00096 8959 11803 15590 9175 11673 8868 3300 5513 30355 25374 31219 9966
ERCC-00097 1 0 0 0 0 1 1 2 2 1 1 3
ERCC-00098 11 17 17 15 7 13 2 2 6 14 11 3
ERCC-00099 10 9 17 4 13 5 5 5 35 25 18 4
ERCC-00104 0 0 0 1 0 0 0 0 0 0 0 1
ERCC-00108 511 780 812 551 669 501 202 363 1963 1501 1428 505
ERCC-00109 3 3 2 2 2 2 1 1 1 2 1 0
ERCC-00111 297 403 492 296 382 282 121 186 896 869 1029 353
ERCC-00112 57 68 107 56 68 38 15 35 207 153 179 54
ERCC-00113 2496 3218 3985 2596 3193 2313 931 1446 8142 6925 8185 2572
ERCC-00116 117 170 219 94 159 122 42 83 409 300 328 144
ERCC-00117 1 1 2 1 0 1 0 0 0 1 2 1
ERCC-00120 0 0 2 1 1 1 0 1 4 1 1 0
ERCC-00123 2 0 3 2 2 4 0 0 0 0 3 0
ERCC-00126 2 3 1 3 1 0 0 0 11 10 1 1
ERCC-00130 12438 16141 20738 12749 15525 12259 4117 7210 43780 37279 43489 13366
ERCC-00131 53 100 114 66 74 89 20 35 200 157 195 76
ERCC-00134 0 1 0 1 1 0 0 0 0 1 2 1
ERCC-00136 825 999 1432 731 943 731 195 375 2530 2392 2346 726
ERCC-00137 24 10 23 27 15 17 5 11 17 13 20 19
ERCC-00138 9 10 26 26 11 8 5 3 11 13 18 11
ERCC-00142 0 0 4 2 3 1 0 0 1 1 3 0
ERCC-00143 4 6 8 7 5 5 2 0 4 5 8 4
ERCC-00144 18 36 26 22 18 17 3 14 66 50 53 19
ERCC-00145 252 378 392 227 289 220 94 147 865 814 602 224
ERCC-00147 0 0 1 0 0 0 0 0 2 2 1 0
ERCC-00148 11 15 25 24 24 18 2 7 28 23 39 16
ERCC-00150 4 8 7 2 5 4 1 2 5 6 10 1
ERCC-00154 4 8 4 5 4 2 6 3 7 13 10 4
ERCC-00156 0 1 0 0 0 0 0 0 1 0 0 0
ERCC-00157 4 3 4 2 7 6 0 0 5 15 12 3
ERCC-00158 1 2 1 3 4 2 1 1 1 1 3 2
ERCC-00160 5 8 8 4 3 9 1 4 12 11 18 5
ERCC-00162 45 58 83 45 49 40 20 17 132 137 144 44
ERCC-00163 13 10 21 19 22 15 4 7 45 28 41 11
ERCC-00164 0 0 0 3 2 2 0 0 1 1 2 0
ERCC-00165 51 38 76 50 60 39 16 19 103 83 128 55
ERCC-00168 0 0 0 1 0 0 0 0 0 0 0 0
ERCC-00170 5 6 4 5 7 2 1 2 11 12 10 5
ERCC-00171 1694 2194 2885 1982 2383 1843 665 1154 5678 4801 6049 2041
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#!/usr/bin/perl
use warnings;
use strict;
sub parseSupplementary($$);
sub parseCountsUtrs($$);
MAIN:
{
my $fileSupplementary = shift;
my $fileCountsUtrs = shift;
my $fileCountsErcc = shift;
my %data = ();
parseSupplementary($fileSupplementary, \%data);
parseCountsUtrs($fileCountsUtrs, \%data);
}
sub parseSupplementary($$)
{
my $fileSupplementary = $_[0];
my $data = $_[1];
my $lineCounter = 0;
open(my $fh, '<', $fileSupplementary) or die $!;
while(<$fh>)
{
chomp($_);
next if($lineCounter++ == 0);
my @line = split("\t", $_);
$data->{"supplementary"}{$line[0]}++;
}
close($fh);
return;
}
sub parseSupplementary($$)
{
my $fileSupplementary = $_[0];
my $data = $_[1];
my $lineCounter = 0;
open(my $fh, '<', $fileSupplementary) or die $!;
while(<$fh>)
{
chomp($_);
next if($lineCounter++ == 0);
my @line = split("\t", $_);
$data->{"supplementary"}{$line[0]}++;
}
close($fh);
return;
}
ERCC InputHc2 InputHc3 80SHc2 80SHc3 2and3Hc2 2and3Hc3 4and5Hc2 4and5Hc3 6and7Hc2 6and7Hc3 bigger7Hc2 bigger7Hc3
ERCC-00002 31329 26857 3575 6079 9140 12382 15199 9748 11895 9531 26377 9934
ERCC-00003 1438 1280 106 152 382 456 632 280 374 300 957 233
ERCC-00004 13739 11403 1274 1961 3920 4865 6757 3681 4579 3910 11893 3558
ERCC-00009 1193 992 143 220 346 439 551 392 464 401 1055 374
ERCC-00012 5 9 3 1 7 16 21 24 24 7 17 8
ERCC-00013 2 5 0 2 6 2 3 4 5 2 4 3
ERCC-00014 2 4 0 1 1 0 1 1 2 2 0 4
ERCC-00016 1 2 0 0 0 2 0 2 3 0 0 0
ERCC-00017 5 2 1 4 9 9 7 19 8 6 6 3
ERCC-00019 73 51 10 14 27 29 43 23 43 43 48 28
ERCC-00022 345 284 35 70 114 148 170 111 127 100 372 150
ERCC-00024 4 5 2 4 6 4 4 1 2 4 9 1
ERCC-00025 83 77 11 20 28 40 44 37 35 20 109 31
ERCC-00028 8 7 2 4 4 7 3 6 6 0 6 3
ERCC-00031 3 1 0 0 0 0 0 1 0 0 2 0
ERCC-00033 5 2 2 0 1 1 0 1 0 0 4 0
ERCC-00034 37 19 13 14 21 22 22 16 15 12 19 3
ERCC-00035 134 102 8 23 39 51 63 39 54 51 119 41
ERCC-00039 4 6 0 1 4 2 3 1 0 0 4 3
ERCC-00040 1 2 0 0 3 5 3 1 5 3 4 4
ERCC-00042 880 806 94 137 256 349 443 261 314 242 881 280
ERCC-00043 767 632 36 74 193 238 305 118 141 105 335 86
ERCC-00044 178 152 21 27 57 72 88 48 65 60 166 44
ERCC-00046 9161 7814 772 1024 2446 2708 4260 1997 2564 2193 7827 1669
ERCC-00048 4 0 1 2 3 4 4 1 10 10 13 1
ERCC-00051 77 51 5 6 17 17 34 11 18 18 63 18
ERCC-00053 55 57 2 5 13 12 33 13 9 9 28 10
ERCC-00054 31 31 1 10 10 16 16 18 12 14 47 22
ERCC-00058 8 4 1 0 2 4 2 3 3 4 3 3
ERCC-00059 31 25 3 6 3 10 20 7 7 3 34 14
ERCC-00060 677 534 63 80 167 238 328 163 181 152 560 134
ERCC-00062 161 161 11 11 43 55 81 41 53 29 77 31
ERCC-00067 6 9 2 2 3 0 4 4 4 4 3 1
ERCC-00069 2 1 1 2 5 7 5 3 3 2 7 4
ERCC-00071 129 105 15 31 41 56 71 37 53 31 100 35
ERCC-00073 2 2 0 2 0 0 3 0 2 0 2 1
ERCC-00074 47394 40293 4567 6799 13302 15432 24005 12680 15608 13132 46083 13560
ERCC-00075 1 1 0 1 0 3 1 2 2 2 3 0
ERCC-00076 389 324 36 66 100 138 170 137 178 107 387 115
ERCC-00077 13 9 1 4 5 11 14 3 5 5 14 3
ERCC-00078 43 35 5 8 11 25 14 14 18 16 37 14
ERCC-00079 102 86 14 27 25 41 45 33 34 30 113 42
ERCC-00081 0 1 1 0 0 1 0 1 1 4 1 0
ERCC-00083 3 1 0 0 0 3 6 3 6 2 4 3
ERCC-00084 36 19 3 7 8 6 8 9 2 4 17 4
ERCC-00085 5 8 0 0 3 3 1 1 5 3 7 1
ERCC-00086 2 1 0 2 3 9 7 6 7 11 8 6
ERCC-00092 429 315 48 59 123 156 199 105 172 104 396 114
ERCC-00095 395 346 41 57 115 129 191 121 135 106 386 121
ERCC-00096 30355 25374 3300 5513 8959 11803 15590 9175 11673 8868 31219 9966
ERCC-00097 2 1 1 2 1 0 0 0 0 1 1 3
ERCC-00098 6 14 2 2 11 17 17 15 7 13 11 3
ERCC-00099 35 25 5 5 10 9 17 4 13 5 18 4
ERCC-00104 0 0 0 0 0 0 0 1 0 0 0 1
ERCC-00108 1963 1501 202 363 511 780 812 551 669 501 1428 505
ERCC-00109 1 2 1 1 3 3 2 2 2 2 1 0
ERCC-00111 896 869 121 186 297 403 492 296 382 282 1029 353
ERCC-00112 207 153 15 35 57 68 107 56 68 38 179 54
ERCC-00113 8142 6925 931 1446 2496 3218 3985 2596 3193 2313 8185 2572
ERCC-00116 409 300 42 83 117 170 219 94 159 122 328 144
ERCC-00117 0 1 0 0 1 1 2 1 0 1 2 1
ERCC-00120 4 1 0 1 0 0 2 1 1 1 1 0
ERCC-00123 0 0 0 0 2 0 3 2 2 4 3 0
ERCC-00126 11 10 0 0 2 3 1 3 1 0 1 1
ERCC-00130 43780 37279 4117 7210 12438 16141 20738 12749 15525 12259 43489 13366
ERCC-00131 200 157 20 35 53 100 114 66 74 89 195 76
ERCC-00134 0 1 0 0 0 1 0 1 1 0 2 1
ERCC-00136 2530 2392 195 375 825 999 1432 731 943 731 2346 726
ERCC-00137 17 13 5 11 24 10 23 27 15 17 20 19
ERCC-00138 11 13 5 3 9 10 26 26 11 8 18 11
ERCC-00142 1 1 0 0 0 0 4 2 3 1 3 0
ERCC-00143 4 5 2 0 4 6 8 7 5 5 8 4
ERCC-00144 66 50 3 14 18 36 26 22 18 17 53 19
ERCC-00145 865 814 94 147 252 378 392 227 289 220 602 224
ERCC-00147 2 2 0 0 0 0 1 0 0 0 1 0
ERCC-00148 28 23 2 7 11 15 25 24 24 18 39 16
ERCC-00150 5 6 1 2 4 8 7 2 5 4 10 1
ERCC-00154 7 13 6 3 4 8 4 5 4 2 10 4
ERCC-00156 1 0 0 0 0 1 0 0 0 0 0 0
ERCC-00157 5 15 0 0 4 3 4 2 7 6 12 3
ERCC-00158 1 1 1 1 1 2 1 3 4 2 3 2
ERCC-00160 12 11 1 4 5 8 8 4 3 9 18 5
ERCC-00162 132 137 20 17 45 58 83 45 49 40 144 44
ERCC-00163 45 28 4 7 13 10 21 19 22 15 41 11
ERCC-00164 1 1 0 0 0 0 0 3 2 2 2 0
ERCC-00165 103 83 16 19 51 38 76 50 60 39 128 55
ERCC-00168 0 0 0 0 0 0 0 1 0 0 0 0
ERCC-00170 11 12 1 2 5 6 4 5 7 2 10 5
ERCC-00171 5678 4801 665 1154 1694 2194 2885 1982 2383 1843 6049 2041
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