1. 16 Nov, 2020 1 commit
  2. 20 Oct, 2020 3 commits
    • Manas Joshi's avatar
      Update README.md · 242d2d00
      Manas Joshi authored
      242d2d00
    • Manas Joshi's avatar
      Update README.md · b434d312
      Manas Joshi authored
      b434d312
    • Manas Joshi's avatar
      Update pop_files/iberian_60_pure.txt, includes/analyse_cds_data.R,... · c8e740be
      Manas Joshi authored
      Update pop_files/iberian_60_pure.txt, includes/analyse_cds_data.R, includes/analyse_upstream_data.R, includes/calculate_divergence_on_region.R, includes/convert_cds_info_to_cds_coordinates.R, includes/convert_cds_to_genomic_coordinates.R, includes/convert_protein_to_genomic_coordinates.R, includes/create_file_system_for_output.R, includes/dnabd_statistics.R, includes/filter_alignments.R, includes/get_alignment.R, includes/get_alignment_cds.R, includes/get_alpha_nonsyn.R, includes/get_alpha_upstream.R, includes/get_ancestral_state.R, includes/get_cds_intervals.R, includes/get_divergence.R, includes/get_divergence_stats_dnabd_nondnabd.R, includes/get_divergent_sites.R, includes/get_divergent_sites2.R, includes/get_dnabd_aa.R, includes/get_dnabd_info.R, includes/get_dnabd_syn_nonsyn_length.R, includes/get_exons_coordinates.R, includes/get_gene_coordinates.R, includes/get_largest_transcript_per_gene.R, includes/get_nei_gojobori_table.R, includes/get_nondnabd_coordinates.R, includes/get_number_of_synonymous_sites.R, includes/get_polymorphim_stats.R, includes/get_polymorphim_stats_dnabd.R, includes/get_polymorphism.R, includes/get_polymorphism_stats_dnabd_nondnabd.R, includes/get_size_of_accessible_data_for_divergence.R, includes/get_transcript_alignment.R, includes/get_transcript_cds.R, includes/get_uniprot_id.R, includes/get_upstream_coordinates.R, includes/get_upstream_divergence_per_gene.R, includes/get_upstream_regions.R, includes/get_variation.R, includes/get_variation_effect.R, includes/get_vcf_subset.R, includes/get_vcf_subset2.R, includes/is_unambiguous_ortholog.R, includes/misc.R, includes/polarize_data.R, includes/resolve_ambiguous_orthology.R, includes/split_syn_nonsyn_sites.R, includes/split_syn_nonsyn_sites_poly.R, includes/step1-4_combined.R, key.R, main.R files
      Deleted all_one_package.R, pop_files/iberian_populations_5pc.txt files
      c8e740be
  3. 29 May, 2020 5 commits