Commits · 8aaccee7c6d9c4db14cd85fcef5c345b3b33a473 · Lucas Miranda / deepOF · GitLab

14 Apr, 2021 1 commit
- Added extra branch to main autoencoder for rule_based prediction · 8aaccee7
  lucas_miranda authored Apr 14, 2021
  
  8aaccee7
12 Apr, 2021 1 commit
- Updated supplementary notebooks · a5c0d808
  lucas_miranda authored Apr 12, 2021
  
  a5c0d808
07 Apr, 2021 1 commit
- Updated deepof experiments · 9c3c78bd
  lucas_miranda authored Apr 07, 2021
  
  9c3c78bd
30 Mar, 2021 1 commit
- Changed trained_models folder location · 69e29d79
  lucas_miranda authored Mar 30, 2021
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Former-commit-id: f192a750
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  69e29d79
29 Mar, 2021 6 commits
- Updated .ipynb files to follow Black style guidelines · 3bd3d968
  lucas_miranda authored Mar 29, 2021
  
  3bd3d968
- Updated .ipynb files to follow Black style guidelines · 485a3553
  lucas_miranda authored Mar 29, 2021
  
  485a3553
- Updated .ipynb files to follow Black style guidelines · 0e7f7f00
  lucas_miranda authored Mar 29, 2021
  
  0e7f7f00
- Updated .ipynb files to follow Black style guidelines · 4be1f4b5
  lucas_miranda authored Mar 29, 2021
  
  4be1f4b5
- Updated .ipynb files to follow Black style guidelines · 40c38bc7
  lucas_miranda authored Mar 29, 2021
  
  40c38bc7
- Updated .ipynb files to follow Black style guidelines · 04753bdc
  lucas_miranda authored Mar 29, 2021
  
  04753bdc
24 Mar, 2021 1 commit
- Rolled back to KNN instead of radius · bda995ce
  lucas_miranda authored Mar 24, 2021
  
  bda995ce
18 Mar, 2021 1 commit
- Reimplemented KL warmup using optimizer iterators; getting rid of the clumsy callback · 547af774
  lucas_miranda authored Mar 18, 2021
  
  547af774
17 Mar, 2021 2 commits

Fixed a bug in model_utils.py that yielded nan entropy values when there were... · 8d39e5e0

lucas_miranda authored Mar 17, 2021

Fixed a bug in model_utils.py that yielded nan entropy values when there were no neighbors in the radius and the selected cluster was 0

8d39e5e0

Fixed a bug in model_utils.py that yielded nan entropy values when there were... · 27e9cc02

lucas_miranda authored Mar 17, 2021

Fixed a bug in model_utils.py that yielded nan entropy values when there were no neighbors in the radius and the selected cluster was 0

27e9cc02

10 Mar, 2021 1 commit
- Added nose2body to rule_based_annotation() · 2acacb00
  lucas_miranda authored Mar 10, 2021
  
  2acacb00
25 Feb, 2021 2 commits
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 11353256
  lucas_miranda authored Feb 25, 2021
  
  11353256
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 7e0a1405
  lucas_miranda authored Feb 25, 2021
  
  7e0a1405
12 Feb, 2021 6 commits
- reformatted smk · 27daa823
  Lucas Miranda authored Feb 12, 2021
  
  27daa823
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 7d09d069
  lucas_miranda authored Feb 12, 2021
  
  7d09d069
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 5d15e43f
  lucas_miranda authored Feb 12, 2021
  
  5d15e43f
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · ad52fd4d
  lucas_miranda authored Feb 12, 2021
  
  ad52fd4d
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 85baa19a
  lucas_miranda authored Feb 12, 2021
  
  85baa19a
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · ff091f9a
  lucas_miranda authored Feb 12, 2021
  
  ff091f9a
11 Feb, 2021 4 commits
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · c7bb409c
  lucas_miranda authored Feb 12, 2021
  
  c7bb409c
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 4cde2f4f
  lucas_miranda authored Feb 11, 2021
  
  4cde2f4f
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 190a812b
  lucas_miranda authored Feb 11, 2021
  
  190a812b
- Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding() · 5199c2c8
  lucas_miranda authored Feb 11, 2021
  
  5199c2c8
10 Feb, 2021 2 commits
- Refactored train_utils.py · 6137bb99
  lucas_miranda authored Feb 10, 2021
  
  6137bb99
- Refactored train_utils.py · 9096578a
  lucas_miranda authored Feb 10, 2021
  
  9096578a
26 Jan, 2021 1 commit
- Changed defaults in deepof_experiments.smk · 4830457d
  lucas_miranda authored Jan 26, 2021
  
  4830457d
25 Jan, 2021 2 commits
- Changed defaults in deepof_experiments.smk · 8ae6ee69
  lucas_miranda authored Jan 25, 2021
  
  8ae6ee69
- Changed defaults in deepof_experiments.smk · 3c642b04
  lucas_miranda authored Jan 25, 2021
  
  3c642b04
21 Jan, 2021 1 commit
- Updated pipfile.lock · 1de3d9b9
  lucas_miranda authored Jan 21, 2021
  
  1de3d9b9
10 Dec, 2020 4 commits
- Autoformatted experiment snakefile · c826cb08
  Lucas Miranda authored Dec 10, 2020
  
  c826cb08
- Added balanced validation set creation option for phenotype classification models · a7d7fa2a
  lucas_miranda authored Dec 10, 2020
  
  a7d7fa2a
- Added balanced validation set creation option for phenotype classification models · 24db48d9
  lucas_miranda authored Dec 10, 2020
  
  24db48d9
- Added phenotype classification to train_model.py · 00b6a59b
  lucas_miranda authored Dec 10, 2020
  
  00b6a59b
09 Dec, 2020 3 commits
- Added phenotype classification to train_model.py · 1af9f3de
  lucas_miranda authored Dec 10, 2020
  
  1af9f3de
- Updated Pipfile.lock · 3113b526
  lucas_miranda authored Dec 10, 2020
  
  3113b526
- Added phenotype classification rule to snakemake pipeline · 0c7a7e95
  lucas_miranda authored Dec 09, 2020
  
  0c7a7e95