Commits · 80fad0ede361e3484c6a8cf9ec16fa2353499e86 · Lucas Miranda / deepOF · GitLab

10 Mar, 2021 2 commits
- Added nose2body to rule_based_annotation() · 80fad0ed
  lucas_miranda authored Mar 10, 2021
  
  80fad0ed
- Added nose2body to rule_based_annotation() · 2acacb00
  lucas_miranda authored Mar 10, 2021
  
  2acacb00
01 Mar, 2021 1 commit
- Added a custom docker image to the CI pipeline · 1db0415e
  lucas_miranda authored Mar 01, 2021
  
  1db0415e
10 Feb, 2021 1 commit
- Added latent space regularization options to GMVAE · 2d21ca43
  lucas_miranda authored Feb 10, 2021
  
  2d21ca43
08 Feb, 2021 1 commit
- Integrated autoencoder fitting to coordinates class in data.py · 2c4a0abf
  lucas_miranda authored Feb 08, 2021
  
  2c4a0abf
25 Jan, 2021 1 commit
- Updated setup.py · bf3be370
  lucas_miranda authored Jan 25, 2021
  
  bf3be370
21 Jan, 2021 2 commits
- Updated pipfile.lock · fca2b12c
  lucas_miranda authored Jan 21, 2021
  
  fca2b12c
- Added l1_l2 regularization to the z_cat layer (that controls the weights for each cluster) · f5ed99e6
  lucas_miranda authored Jan 21, 2021
  
  f5ed99e6
10 Dec, 2020 4 commits
- Added balanced validation set creation option for phenotype classification models · 147595c2
  lucas_miranda authored Dec 10, 2020
  
  147595c2
- Refactored GMVAE code · 4559cbd9
  lucas_miranda authored Dec 10, 2020
  
  4559cbd9
- Refactored GMVAE code · 5edc8e77
  lucas_miranda authored Dec 10, 2020
  
  5edc8e77
- Refactored GMVAE code · c3c746e0
  lucas_miranda authored Dec 10, 2020
  
  c3c746e0
09 Dec, 2020 4 commits
- Added phenotype classification to train_model.py · 1af9f3de
  lucas_miranda authored Dec 10, 2020
  
  1af9f3de
- Updated Pipfile.lock · 3113b526
  lucas_miranda authored Dec 10, 2020
  
  3113b526
- Added CustomStopper class to train_utils.py, to start early stopping only after annealing is over · 67c7b974
  lucas_miranda authored Dec 09, 2020
  
  67c7b974
- Added CustomStopper class to train_utils.py, to start early stopping only after annealing is over · 20d84de8
  lucas_miranda authored Dec 09, 2020
  
  20d84de8
08 Dec, 2020 1 commit
- Added CustomStopper class to train_utils.py, to start early stopping only after annealing is over · 0253009f
  lucas_miranda authored Dec 08, 2020
  
  0253009f
07 Dec, 2020 4 commits
- Added CustomStopper class to train_utils.py, to start early stopping only after annealing is over · 1aa84f65
  lucas_miranda authored Dec 08, 2020
  
  1aa84f65
- Updated prior to a slightly simpler trainable distribution · 5b343dc4
  lucas_miranda authored Dec 07, 2020
  
  5b343dc4
- Updated prior to a slightly simpler trainable distribution · 437df3f5
  lucas_miranda authored Dec 07, 2020
  
  437df3f5
- Updated prior to a slightly simpler trainable distribution · 14fbab61
  lucas_miranda authored Dec 07, 2020
  
  14fbab61
06 Dec, 2020 4 commits
- Added negative log likelihood of a Bernoulli distribution as reconstruction loss · 7d89b57d
  lucas_miranda authored Dec 06, 2020
  
  7d89b57d
- Scaled loss functions with batch size · b9d0905e
  lucas_miranda authored Dec 06, 2020
  
  b9d0905e
- Added more thorough testing of KLDivergence loss · 3fd15b6c
  lucas_miranda authored Dec 06, 2020
  
  3fd15b6c
- Added more thorough testing of KLDivergence loss · b8d3c926
  lucas_miranda authored Dec 06, 2020
  
  b8d3c926
05 Dec, 2020 1 commit
- Added hyperparameter logging for run trial and cluster number · 63f500bc
  lucas_miranda authored Dec 05, 2020
  
  63f500bc
04 Dec, 2020 2 commits
- Adds output path option to train_model.py · 211ac876
  lucas_miranda authored Dec 04, 2020
  
  211ac876
- Adds output path option to train_model.py · 72e9b0ef
  lucas_miranda authored Dec 04, 2020
  
  72e9b0ef
03 Dec, 2020 3 commits
- Added encoding size as a CL parameter in train_model.py · 7aaa0341
  lucas_miranda authored Dec 03, 2020
  
  7aaa0341
- Added encoding size as a CL parameter in train_model.py · b0b65f83
  lucas_miranda authored Dec 03, 2020
  
  b0b65f83
- Added encoding size as a CL parameter in train_model.py · 486fe222
  lucas_miranda authored Dec 03, 2020
  
  486fe222
01 Dec, 2020 1 commit
- Solved TODO · 14ff7473
  lucas_miranda authored Dec 01, 2020
  
  14ff7473
30 Nov, 2020 1 commit
- Reformatted files using last version of Black; fixed seaborn update issues · 3234508f
  lucas_miranda authored Nov 30, 2020
  
  3234508f
27 Nov, 2020 3 commits
- Added hyperband support for hyperparameter tuning · b28d1e5a
  lucas_miranda authored Nov 27, 2020
  
  b28d1e5a
- Added bidirectional merge mode to the list of hyperparameters · 501b4d07
  lucas_miranda authored Nov 27, 2020
  
  501b4d07
- Updated requirements.txt · 60cb0f7b
  lucas_miranda authored Nov 27, 2020
  
  60cb0f7b
25 Nov, 2020 4 commits
- Added a hyperparameter controlling the number of layers near the latent space · 4516d533
  lucas_miranda authored Nov 25, 2020
  
  4516d533
- Added a hyperparameter controlling the number of layers near the latent space · 41670663
  lucas_miranda authored Nov 25, 2020
  
  41670663
- Updated default GMVAE models · 13c2a34e
  lucas_miranda authored Nov 25, 2020
  
  13c2a34e
- Updated default GMVAE models · 2bdf2679
  lucas_miranda authored Nov 25, 2020
  
  2bdf2679