Commit c826cb08 authored by Lucas Miranda's avatar Lucas Miranda
Browse files

Autoformatted experiment snakefile

parent a7d7fa2a
Pipeline #89345 passed with stage
in 74 minutes and 52 seconds
......@@ -14,11 +14,12 @@ Plot rule graph: snakemake --snakefile deepof_experiments.smk --forceall --ruleg
import os
outpath = "/u/lucasmir/DLC/DLC_autoencoders/DeepOF/deepof/logs/"
losses = ["ELBO"]#, "MMD", "ELBO+MMD"]
encodings = [4, 6, 8]#[2, 4, 6, 8, 10, 12, 14, 16]
cluster_numbers = [10, 15]#[1, 5, 10, 15, 20]
losses = ["ELBO"] # , "MMD", "ELBO+MMD"]
encodings = [4, 6, 8] # [2, 4, 6, 8, 10, 12, 14, 16]
cluster_numbers = [10, 15] # [1, 5, 10, 15, 20]
pheno_weights = [0.01, 0.1, 0.25, 0.5, 1.0, 2.0, 4.0, 10.0, 100.0]
rule deepof_experiments:
input:
expand(
......@@ -35,7 +36,7 @@ rule deepof_experiments:
encs=encodings,
k=cluster_numbers,
phenos=pheno_weights,
)
),
# rule coarse_hyperparameter_tuning:
......@@ -65,6 +66,7 @@ rule deepof_experiments:
# "--hyperparameter-tuning hyperband "
# "--hpt-trials 3"
rule explore_encoding_dimension_and_loss_function:
input:
data_path=ancient("/u/lucasmir/DLC/DLC_models/deepof_single_topview/"),
......@@ -121,4 +123,3 @@ rule explore_phenotype_classification:
"--window-step 11 "
"--stability-check 3 "
"--output-path {outpath}pheno_classification_experiments"
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