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Lucas Miranda
deepOF
Commits
961b47fa
Commit
961b47fa
authored
Apr 15, 2021
by
lucas_miranda
Browse files
Added extra branch to main autoencoder for rule_based prediction
parent
ae1e3d4e
Pipeline
#98480
canceled with stages
in 6 minutes and 1 second
Changes
1
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deepof_experiments.smk
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961b47fa
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@@ -116,20 +116,17 @@ rule train_models:
"/psycl/g/mpsstatgen/lucas/DLC/DLC_models/deepof_single_topview/"
),
output:
trained_models=os.path.join(
outpath,
"trained_weights/"
"GMVAE_NextSeqPred={nspredweight}_"
"PhenoPred={phenpredweight}_"
"RuleBasedPred={rulesweight}_"
"loss={loss}_"
"encoding={encs}_"
"k={k}_"
"latreg={latreg}_"
"entropyknn={entknn}_"
"run={run}_"
"final_weights.h5",
),
trained_models=outpath + "train_models/trained_weights/"
"GMVAE_NextSeqPred={nspredweight}_"
"PhenoPred={phenpredweight}_"
"RuleBasedPred={rulesweight}_"
"loss={loss}_"
"encoding={encs}_"
"k={k}_"
"latreg={latreg}_"
"entropyknn={entknn}_"
"run={run}_"
"final_weights.h5",
shell:
"pipenv run python -m deepof.train_model "
"--train-path {input.data_path} "
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