Commit 5d15e43f authored by lucas_miranda's avatar lucas_miranda
Browse files

Added latent regularization control to deepof.data.coordinates.deep_unsupervised_embedding()

parent 4e373883
Pipeline #93410 canceled with stage
in 17 seconds
......@@ -23,9 +23,10 @@ pheno_weights = [0.01, 0.1, 0.25, 0.5, 1.0, 2.0, 4.0, 10.0, 100.0]
rule deepof_experiments:
input:
expand( "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/hyperparameter_tuning/trained_weights/"
"GMVAE_loss={loss}_encoding=4_run_1_final_weights.h5",
expand( os.path.join(outpath, "hyperparameter_tuning/trained_weights/GMVAE_loss={loss}_k={k}_encoding={enc}_final_weights.h5"),
loss=losses,
k=cluster_numbers,
enc=encodings,
)
# expand(
# "/psycl/g/mpsstatgen/lucas/DLC/DLC_autoencoders/DeepOF/deepof/logs/latent_regularization_experiments/trained_weights/"
......@@ -51,7 +52,7 @@ rule coarse_hyperparameter_tuning:
output:
trained_models=os.path.join(
outpath,
"hyperparameter_tuning/trained_weights/GMVAE_loss={loss}_encoding=2_run_1_final_weights.h5",
"hyperparameter_tuning/trained_weights/GMVAE_loss={loss}_k={k}_encoding={enc}_final_weights.h5",
),
shell:
"pipenv run python -m deepof.train_model "
......
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