Commit 5025ca6f authored by lucas_miranda's avatar lucas_miranda
Browse files

Added hyperparameter logging for run trial and cluster number

parent 63f500bc
......@@ -28,6 +28,34 @@ rule deepof_experiments:
),
rule coarse_hyperparameter_tuning:
input:
data_path="/u/lucasmir/DLC/DLC_models/deepof_single_topview/",
output:
trained_models=os.path.join(
outpath,
"coarse_hyperparameter_tuning/trained_weights/GMVAE_loss={loss}_encoding={encs}_run_1_final_weights.h5",
),
shell:
"pipenv run python -m deepof.train_model "
"--train-path {input.data_path} "
"--val-num 25 "
"--components 10 "
"--input-type coords "
"--predictor 0 "
"--variational True "
"--loss {wildcards.loss} "
"--kl-warmup 20 "
"--mmd-warmup 20 "
"--encoding-size 2 "
"--batch-size 256 "
"--window-size 11 "
"--window-step 11 "
"--exclude-bodyparts Tail_base,Tail_1,Tail_2,Tail_tip,Spine_2 "
"--output-path {outpath}coarse_hyperparameter_tuning "
"--hyperparameter-tuning hyperband "
"--hpt-trials 3"
rule explore_encoding_dimension_and_loss_function:
input:
data_path="/u/lucasmir/DLC/DLC_models/deepof_single_topview/",
......
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