diff --git a/deepof_experiments.smk b/deepof_experiments.smk index a1941aa852bba9acd7a1c2dfab83d0c19fd0122e..0b5ed5fd0d24e575e32433177ea4707aea46be40 100644 --- a/deepof_experiments.smk +++ b/deepof_experiments.smk @@ -16,7 +16,7 @@ import os outpath = "/u/lucasmir/DLC/DLC_autoencoders/DeepOF/deepof/logs/" losses = ["ELBO"] # , "MMD", "ELBO+MMD"] encodings = [4, 6, 8] # [2, 4, 6, 8, 10, 12, 14, 16] -cluster_numbers = [10, 15] # [1, 5, 10, 15, 20] +cluster_numbers = [10, 15, 20] # [1, 5, 10, 15, 20] pheno_weights = [0.01, 0.1, 0.25, 0.5, 1.0, 2.0, 4.0, 10.0, 100.0] @@ -29,14 +29,14 @@ rule deepof_experiments: encs=encodings, k=cluster_numbers, ), - expand( - "/u/lucasmir/DLC/DLC_autoencoders/DeepOF/deepof/logs/pheno_classification_experiments/trained_weights/" - "GMVAE_loss={loss}_encoding={encs}_k={k}_pheno={phenos}_run_1_final_weights.h5", - loss=losses, - encs=encodings, - k=cluster_numbers, - phenos=pheno_weights, - ), + # expand( + # "/u/lucasmir/DLC/DLC_autoencoders/DeepOF/deepof/logs/pheno_classification_experiments/trained_weights/" + # "GMVAE_loss={loss}_encoding={encs}_k={k}_pheno={phenos}_run_1_final_weights.h5", + # loss=losses, + # encs=encodings, + # k=cluster_numbers, + # phenos=pheno_weights, + # ), # rule coarse_hyperparameter_tuning: