Commit 0c7a7e95 authored by lucas_miranda's avatar lucas_miranda
Browse files

Added phenotype classification rule to snakemake pipeline

parent 12e58bb7
......@@ -67,12 +67,12 @@ rule deepof_experiments:
rule explore_encoding_dimension_and_loss_function:
input:
data_path="/u/lucasmir/DLC/DLC_models/deepof_single_topview/",
data_path=ancient("/u/lucasmir/DLC/DLC_models/deepof_single_topview/"),
output:
trained_models=ancient(os.path.join(
trained_models=os.path.join(
outpath,
"dimension_and_loss_experiments/trained_weights/GMVAE_loss={loss}_encoding={encs}_k={k}_run_1_final_weights.h5",
)),
),
shell:
"pipenv run python -m deepof.train_model "
"--train-path {input.data_path} "
......
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