From 021e24d8aa5c715b15c4933d6b7f43092df2f293 Mon Sep 17 00:00:00 2001
From: lucas_miranda <lucasmiranda42@gmail.com>
Date: Sun, 6 Dec 2020 22:42:30 +0100
Subject: [PATCH] Added negative log likelihood of a Bernoulli distribution as
reconstruction loss
---
deepof_experiments.smk | 16 +---------------
1 file changed, 1 insertion(+), 15 deletions(-)
diff --git a/deepof_experiments.smk b/deepof_experiments.smk
index 99ce16b8..7ae06969 100644
--- a/deepof_experiments.smk
+++ b/deepof_experiments.smk
@@ -68,7 +68,7 @@ rule explore_encoding_dimension_and_loss_function:
shell:
"pipenv run python -m deepof.train_model "
"--train-path {input.data_path} "
- "--val-num 10 "
+ "--val-num 25 "
"--components {wildcards.k} "
"--input-type coords "
"--predictor 0 "
@@ -83,17 +83,3 @@ rule explore_encoding_dimension_and_loss_function:
"--exclude-bodyparts Tail_base,Tail_1,Tail_2,Tail_tip,Spine_2 "
"--stability-check 3 "
"--output-path {outpath}dimension_and_loss_experiments"
-
-
-# rule explore_number_of_components:
-# input:
-# output:
-# shell:
-# rule explore_phenotype_prediction:
-# input:
-# output:
-# shell:
-# rule explore_predictor_branch:
-# input:
-# output:
-# shell:
--
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