# This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . # # Copyright(C) 2013-2018 Max-Planck-Society # # NIFTy is being developed at the Max-Planck-Institut fuer Astrophysik # and financially supported by the Studienstiftung des deutschen Volkes. import nifty5 as ift import numpy as np def get_2D_exposure(): x_shape, y_shape = position_space.shape exposure = np.ones(position_space.shape) exposure[x_shape//3:x_shape//2, :] *= 2. exposure[x_shape*4//5:x_shape, :] *= .1 exposure[x_shape//2:x_shape*3//2, :] *= 3. exposure[:, x_shape//3:x_shape//2] *= 2. exposure[:, x_shape*4//5:x_shape] *= .1 exposure[:, x_shape//2:x_shape*3//2] *= 3. exposure = ift.Field.from_global_data(position_space, exposure) return exposure if __name__ == '__main__': # FIXME description of the tutorial np.random.seed(41) # Set up the position space of the signal # # # One dimensional regular grid with uniform exposure # position_space = ift.RGSpace(1024) # exposure = np.ones(position_space.shape) # Two-dimensional regular grid with inhomogeneous exposure position_space = ift.RGSpace([512, 512]) exposure = get_2D_exposure() # # Sphere with with uniform exposure # position_space = ift.HPSpace(128) # exposure = ift.Field.full(position_space, 1.) # Defining harmonic space and transform harmonic_space = position_space.get_default_codomain() HT = ift.HarmonicTransformOperator(harmonic_space, position_space) domain = ift.MultiDomain.make({'xi': harmonic_space}) position = ift.from_random('normal', domain) # Define power spectrum and amplitudes def sqrtpspec(k): return 1. / (20. + k**2) p_space = ift.PowerSpace(harmonic_space) pd = ift.PowerDistributor(harmonic_space, p_space) a = ift.PS_field(p_space, sqrtpspec) A = pd(a) # Set up a sky model xi = ift.Variable(position)['xi'] logsky_h = xi * A logsky = HT(logsky_h) sky = ift.PointwiseExponential(logsky) M = ift.DiagonalOperator(exposure) GR = ift.GeometryRemover(position_space) # Set up instrumental response R = GR * M # Generate mock data d_space = R.target[0] lamb = R(sky) mock_position = ift.from_random('normal', lamb.position.domain) data = lamb.at(mock_position).value data = np.random.poisson(data.to_global_data().astype(np.float64)) data = ift.Field.from_global_data(d_space, data) # Compute likelihood and Hamiltonian position = ift.from_random('normal', lamb.position.domain) likelihood = ift.PoissonianEnergy(lamb, data) ic_cg = ift.GradientNormController(iteration_limit=50) ic_newton = ift.GradientNormController(name='Newton', iteration_limit=50, tol_abs_gradnorm=1e-3) minimizer = ift.RelaxedNewton(ic_newton) # Minimize the Hamiltonian H = ift.Hamiltonian(likelihood) H = H.make_invertible(ic_cg) H, convergence = minimizer(H) # Plot results result_sky = sky.at(H.position).value # FIXME PLOTTING