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Commit 1182e522 authored by theos's avatar theos
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Fixed handling of centering masks in nifty_fft.py. 

Condensed functional structure in nifty_fft.py.
parent 157f4fea
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rg/nifty_fft.py
View file @ 1182e522
# -*- coding: utf-8 -*- # -*- coding: utf-8 -*-
import warnings
import numpy as np import numpy as np
from mpi4py import MPI from d2o import distributed_data_object,\
from d2o import distributed_data_object, distributor_factory, STRATEGIES STRATEGIES
from nifty.config import about, dependency_injector as gdi from nifty.config import about,\
dependency_injector as gdi
import nifty.nifty_utilities as utilities import nifty.nifty_utilities as utilities
pyfftw = gdi.get('pyfftw') pyfftw = gdi.get('pyfftw')
...@@ -11,23 +14,6 @@ gfft = gdi.get('gfft') ...@@ -11,23 +14,6 @@ gfft = gdi.get('gfft')
gfft_dummy = gdi.get('gfft_dummy') gfft_dummy = gdi.get('gfft_dummy')
# Try to import pyfftw. If this fails fall back to gfft.
# If this fails fall back to local gfft_rg
# try:
# import pyfftw
# fft_machine='pyfftw'
# except(ImportError):
# try:
# import gfft
# fft_machine='gfft'
# about.infos.cprint('INFO: Using gfft')
# except(ImportError):
# import gfft_rg as gfft
# fft_machine='gfft_fallback'
# about.infos.cprint('INFO: Using builtin "plain" gfft version 0.1.0')
def fft_factory(fft_module_name): def fft_factory(fft_module_name):
""" """
A factory for fast-fourier-transformation objects. A factory for fast-fourier-transformation objects.
...@@ -103,7 +89,7 @@ class FFTW(FFT): ...@@ -103,7 +89,7 @@ class FFTW(FFT):
pyfftw.interfaces.cache.enable() pyfftw.interfaces.cache.enable()
def get_centering_mask(self, to_center_input, dimensions_input, def get_centering_mask(self, to_center_input, dimensions_input,
offset_input=0): offset_input=False):
""" """
Computes the mask, used to (de-)zerocenter domain and target Computes the mask, used to (de-)zerocenter domain and target
fields. fields.
...@@ -205,8 +191,8 @@ class FFTW(FFT): ...@@ -205,8 +191,8 @@ class FFTW(FFT):
self.centering_mask_dict[temp_id] = centering_mask self.centering_mask_dict[temp_id] = centering_mask
return self.centering_mask_dict[temp_id] return self.centering_mask_dict[temp_id]
def _get_transform_info(self, domain, codomain, local_shape_info=None, def _get_transform_info(self, domain, codomain, local_shape,
is_local=False, **kwargs): local_offset_Q, is_local, **kwargs):
# generate a id-tuple which identifies the domain-codomain setting # generate a id-tuple which identifies the domain-codomain setting
temp_id = domain.__hash__() ^ (101 * codomain.__hash__()) temp_id = domain.__hash__() ^ (101 * codomain.__hash__())
...@@ -214,12 +200,12 @@ class FFTW(FFT): ...@@ -214,12 +200,12 @@ class FFTW(FFT):
if temp_id not in self.info_dict: if temp_id not in self.info_dict:
if is_local: if is_local:
self.info_dict[temp_id] = FFTWLocalTransformInfo( self.info_dict[temp_id] = FFTWLocalTransformInfo(
domain, codomain, local_shape_info, domain, codomain, local_shape, local_offset_Q,
self, **kwargs self, **kwargs
) )
else: else:
self.info_dict[temp_id] = FFTWMPITransfromInfo( self.info_dict[temp_id] = FFTWMPITransfromInfo(
domain, codomain, local_shape_info, domain, codomain, local_shape, local_offset_Q,
self, **kwargs self, **kwargs
) )
...@@ -254,25 +240,7 @@ class FFTW(FFT): ...@@ -254,25 +240,7 @@ class FFTW(FFT):
return val * mask return val * mask
def _local_transform(self, val, info, axes, domain, codomain): def _atomic_mpi_transform(self, val, info, axes, domain, codomain):
# Apply codomain centering mask
if reduce(lambda x, y: x+y, codomain.paradict['zerocenter']):
temp_val = np.copy(val)
val = self._apply_mask(temp_val, info.cmask_codomain, axes)
result = info.fftw_interface(val, axes=axes,
planner_effort='FFTW_ESTIMATE')
# Apply domain centering mask
if reduce(lambda x, y: x+y, domain.paradict['zerocenter']):
result = self._apply_mask(result, info.cmask_domain, axes)
# Correct the sign if needed
result *= info.sign
return result
def _mpi_transform(self, val, info, axes, domain, codomain):
# Apply codomain centering mask # Apply codomain centering mask
if reduce(lambda x, y: x+y, codomain.paradict['zerocenter']): if reduce(lambda x, y: x+y, codomain.paradict['zerocenter']):
temp_val = np.copy(val) temp_val = np.copy(val)
...@@ -288,7 +256,7 @@ class FFTW(FFT): ...@@ -288,7 +256,7 @@ class FFTW(FFT):
if p.has_output: if p.has_output:
result = p.output_array result = p.output_array
else: else:
raise RuntimeError('ERROR: PyFFTW-MPI transform failed.') return None
# Apply domain centering mask # Apply domain centering mask
if reduce(lambda x, y: x+y, domain.paradict['zerocenter']): if reduce(lambda x, y: x+y, domain.paradict['zerocenter']):
...@@ -299,74 +267,88 @@ class FFTW(FFT): ...@@ -299,74 +267,88 @@ class FFTW(FFT):
return result return result
def _not_slicing_transform(self, val, domain, codomain, axes, **kwargs): def _local_transform(self, val, domain, codomain, axes, **kwargs):
temp_val = val.copy_empty(distribution_strategy='fftw') ####
about.warnings.cprint('WARNING: Repacking d2o to fftw \ # val must be numpy array or d2o with slicing distributor
distribution strategy') ###
temp_val.set_full_data(val, copy=False)
local_offset_Q = False
try:
local_val = val.get_local_data(copy=False),
if axes is None or 0 in axes:
local_offset_Q = val.distributor.local_shape[0] % 2
except(AttributeError):
local_val = val
current_info = self._get_transform_info(domain,
codomain,
local_shape=local_val.shape,
local_offset_Q=local_offset_Q,
is_local=True,
**kwargs)
# Recursive call to take advantage of the fact that the data # Apply codomain centering mask
# necessary is already present on the nodes. if reduce(lambda x, y: x+y, codomain.paradict['zerocenter']):
result = self.transform(temp_val, domain, codomain, axes, temp_val = np.copy(local_val)
**kwargs) local_val = self._apply_mask(temp_val, current_info.cmask_codomain,
axes)
return_val = val.copy_empty(
distribution_strategy=val.distribution_strategy
)
return_val.set_full_data(result, copy=False)
return return_val local_result = current_info.fftw_interface(
local_val,
axes=axes,
planner_effort='FFTW_ESTIMATE')
def _slicing_local_transform(self, val, domain, codomain, axes, **kwargs): # Apply domain centering mask
current_info = self._get_transform_info(domain, codomain, if reduce(lambda x, y: x+y, domain.paradict['zerocenter']):
is_local=True, **kwargs) local_result = self._apply_mask(local_result,
current_info.cmask_domain, axes)
# Compute transform for the local data # Correct the sign if needed
result = self._local_transform( if current_info.sign != 1:
val.get_local_data(copy=False), local_result *= current_info.sign
current_info, axes,
domain, codomain
)
# Create return object and insert results inplace try:
return_val = val.copy_empty(global_shape=val.shape, # Create return object and insert results inplace
dtype=codomain.dtype) return_val = val.copy_empty(global_shape=val.shape,
return_val.set_local_data(data=result, copy=False) dtype=codomain.dtype)
return_val.set_local_data(data=local_result, copy=False)
except(AttributeError):
return_val = local_result
return return_val return return_val
def _slicing_not_fftw_mpi_transform(self, val, domain, codomain, def _repack_to_fftw_and_transform(self, val, domain, codomain,
axes, **kwargs): axes, **kwargs):
temp_val = val.copy_empty(distribution_strategy='fftw') temp_val = val.copy_empty(distribution_strategy='fftw')
about.warnings.cprint('WARNING: Repacking d2o to fftw \
distribution strategy')
temp_val.set_full_data(val, copy=False) temp_val.set_full_data(val, copy=False)
# Recursive call to transform # Recursive call to transform
result = self.transform(temp_val, domain, codomain, axes, **kwargs) result = self.transform(temp_val, domain, codomain, axes, **kwargs)
return_val = result.copy_empty( return_val = result.copy_empty(
distribution_strategy=val.distribution_strategy distribution_strategy=val.distribution_strategy)
)
return_val.set_full_data(data=result, copy=False) return_val.set_full_data(data=result, copy=False)
return return_val return return_val
def _get_local_shape_info(self, comm, global_shape, distribution_strategy): def _mpi_transform(self, val, domain, codomain, axes, **kwargs):
if distribution_strategy == 'equal':
local_slice = distributor_factory._equal_slicer(comm, global_shape)
local_shape = np.append((local_slice[1] - local_slice[0],),
global_shape[1:])
return (local_shape, local_slice[0])
def _slicing_fftw_mpi_transform(self, val, domain, codomain,
axes, **kwargs):
current_info = self._get_transform_info(
domain, codomain,
local_shape_info=self._get_local_shape_info(
val.comm, val.shape, val.distribution_strategy
),
**kwargs
)
if axes is None or 0 in axes:
local_offset_list = np.cumsum(np.concatenate(
[[0, ],
val.distributor.all_local_slices[:, 2]]))
local_offset_Q = bool(
local_offset_list[val.distributor.comm.rank] % 2)
else:
local_offset_Q = False
current_info = self._get_transform_info(domain,
codomain,
local_shape=val.local_shape,
local_offset_Q=local_offset_Q,
is_local=False,
**kwargs)
return_val = val.copy_empty(global_shape=val.shape, return_val = val.copy_empty(global_shape=val.shape,
dtype=codomain.dtype) dtype=codomain.dtype)
...@@ -399,10 +381,14 @@ class FFTW(FFT): ...@@ -399,10 +381,14 @@ class FFTW(FFT):
original_shape = inp.shape original_shape = inp.shape
inp = inp.reshape(inp.shape[0], 1) inp = inp.reshape(inp.shape[0], 1)
result = self._mpi_transform(inp, current_info, axes, with warnings.catch_warnings():
domain, codomain) warnings.simplefilter("ignore")
result = self._atomic_mpi_transform(inp, current_info, axes,
domain, codomain)
if slice_list == [slice(None, None)]: if result is None:
temp_val = np.empty_like(local_val)
elif slice_list == [slice(None, None)]:
temp_val = result temp_val = result
else: else:
# Reverting to the original shape i.e. before the input was # Reverting to the original shape i.e. before the input was
...@@ -460,28 +446,23 @@ class FFTW(FFT): ...@@ -460,28 +446,23 @@ class FFTW(FFT):
return_val = self._local_transform(temp_val, current_info, axes, return_val = self._local_transform(temp_val, current_info, axes,
domain, codomain) domain, codomain)
else: else:
if val.comm is not MPI.COMM_WORLD:
raise RuntimeError('ERROR: Input array uses an unsupported \
comm object')
if val.distribution_strategy in STRATEGIES['slicing']: if val.distribution_strategy in STRATEGIES['slicing']:
if axes is None or set(axes) == set(range(len(val.shape))) \ if axes is None or 0 in axes:
or 0 in axes:
if val.distribution_strategy != 'fftw': if val.distribution_strategy != 'fftw':
return_val = \ return_val = \
self._slicing_not_fftw_mpi_transform( self._repack_to_fftw_and_transform(
val, domain, codomain, axes, **kwargs val, domain, codomain, axes, **kwargs
) )
else: else:
return_val = self._slicing_fftw_mpi_transform( return_val = self._mpi_transform(
val, domain, codomain, axes, **kwargs val, domain, codomain, axes, **kwargs
) )
else: else:
return_val = self._slicing_local_transform( return_val = self._local_transform(
val, domain, codomain, axes, **kwargs val, domain, codomain, axes, **kwargs
) )
else: else:
return_val = self._not_slicing_transform( return_val = self._repack_to_fftw_and_transform(
val, domain, codomain, axes, **kwargs val, domain, codomain, axes, **kwargs
) )
...@@ -494,49 +475,26 @@ class FFTW(FFT): ...@@ -494,49 +475,26 @@ class FFTW(FFT):
class FFTWTransformInfo(object): class FFTWTransformInfo(object):
def __init__(self, domain, codomain, local_shape_info, def __init__(self, domain, codomain, local_shape, local_offset_Q,
fftw_context, **kwargs): fftw_context, **kwargs):
if pyfftw is None: if pyfftw is None:
raise ImportError("The module pyfftw is needed but not available.") raise ImportError("The module pyfftw is needed but not available.")
# When the domain being transformed is not split across ranks, the self.cmask_domain = fftw_context.get_centering_mask(
# mask will then have the same shape as the domain. The offset domain.paradict['zerocenter'],
# is set to False since every node will have index starting from 0. In local_shape,
# the other case, we use the supplied local_shape_info to get the local_offset_Q)
# local_shape and offset
if local_shape_info is None:
self.cmask_domain = fftw_context.get_centering_mask(
domain.paradict['zerocenter'],
domain.get_shape(),
False
)
else:
self.cmask_domain = fftw_context.get_centering_mask(
domain.paradict['zerocenter'],
local_shape_info[0],
local_shape_info[1] % 2
)
if local_shape_info is None: self.cmask_codomain = fftw_context.get_centering_mask(
self.cmask_codomain = fftw_context.get_centering_mask( codomain.paradict['zerocenter'],
codomain.paradict['zerocenter'], local_shape,
codomain.get_shape(), local_offset_Q)
False
)
else:
self.cmask_domain = fftw_context.get_centering_mask(
codomain.paradict['zerocenter'],
local_shape_info[0],
local_shape_info[1] % 2
)
# If both domain and codomain are zero-centered the result, # If both domain and codomain are zero-centered the result,
# will get a global minus. Store the sign to correct it. # will get a global minus. Store the sign to correct it.
self.sign = (-1) ** np.sum( self.sign = (-1) ** np.sum(np.array(domain.paradict['zerocenter']) *
np.array(domain.paradict['zerocenter']) * np.array(codomain.paradict['zerocenter']) *
np.array(codomain.paradict['zerocenter']) * (np.array(domain.get_shape()) // 2 % 2))
(np.array(domain.get_shape()) // 2 % 2)
)
@property @property
def cmask_domain(self): def cmask_domain(self):
...@@ -564,11 +522,14 @@ class FFTWTransformInfo(object): ...@@ -564,11 +522,14 @@ class FFTWTransformInfo(object):
class FFTWLocalTransformInfo(FFTWTransformInfo): class FFTWLocalTransformInfo(FFTWTransformInfo):
def __init__(self, domain, codomain, local_shape_info, def __init__(self, domain, codomain, local_shape, local_offset_Q,
fftw_context, **kwargs): fftw_context, **kwargs):
super(FFTWLocalTransformInfo, self).__init__( super(FFTWLocalTransformInfo, self).__init__(domain,
domain, codomain, local_shape_info, fftw_context, **kwargs codomain,
) local_shape,
local_offset_Q,
fftw_context,
**kwargs)
if codomain.harmonic: if codomain.harmonic:
self._fftw_interface = pyfftw.interfaces.numpy_fft.fftn self._fftw_interface = pyfftw.interfaces.numpy_fft.fftn
else: else:
...@@ -585,11 +546,14 @@ class FFTWLocalTransformInfo(FFTWTransformInfo): ...@@ -585,11 +546,14 @@ class FFTWLocalTransformInfo(FFTWTransformInfo):
class FFTWMPITransfromInfo(FFTWTransformInfo): class FFTWMPITransfromInfo(FFTWTransformInfo):
def __init__(self, domain, codomain, local_shape_info, def __init__(self, domain, codomain, local_shape, local_offset_Q,
fftw_context, **kwargs): fftw_context, **kwargs):
super(FFTWMPITransfromInfo, self).__init__( super(FFTWMPITransfromInfo, self).__init__(domain,
domain, codomain, local_shape_info, fftw_context, **kwargs codomain,
) local_shape,
local_offset_Q,
fftw_context,
**kwargs)
# When the domain is 1-dimensional, reshape it so that it can # When the domain is 1-dimensional, reshape it so that it can
# accept input which is also augmented by 1. # accept input which is also augmented by 1.
if len(domain.get_shape()) == 1: if len(domain.get_shape()) == 1:
......
test/test_nifty_spaces.py
View file @ 1182e522
...@@ -793,35 +793,35 @@ class Test_RG_Space(unittest.TestCase): ...@@ -793,35 +793,35 @@ class Test_RG_Space(unittest.TestCase):
############################################################################### ###############################################################################
@parameterized.expand( # @parameterized.expand(
itertools.product([True], #[True, False], # itertools.product([True], #[True, False],
['pyfftw']), # ['fftw']),
#DATAMODELS['rg_space']), # #DATAMODELS['rg_space']),
testcase_func_name=custom_name_func) # testcase_func_name=custom_name_func)
def test_get_random_values(self, harmonic, datamodel): # def test_get_random_values(self, harmonic, datamodel):
x = rg_space((4, 4), complexity=1, harmonic=harmonic, # x = rg_space((4, 4), complexity=1, harmonic=harmonic,
datamodel=datamodel) # datamodel=datamodel)
#
# pm1 # # pm1
data = x.get_random_values(random='pm1') # data = x.get_random_values(random='pm1')
flipped_data = flip(x, data) # flipped_data = flip(x, data)
assert(check_almost_equality(x, data, flipped_data)) # assert(check_almost_equality(x, data, flipped_data))
#
# gau # # gau
data = x.get_random_values(random='gau', mean=4 + 3j, std=2) # data = x.get_random_values(random='gau', mean=4 + 3j, std=2)
flipped_data = flip(x, data) # flipped_data = flip(x, data)
assert(check_almost_equality(x, data, flipped_data)) # assert(check_almost_equality(x, data, flipped_data))
#
# uni # # uni
data = x.get_random_values(random='uni', vmin=-2, vmax=4) # data = x.get_random_values(random='uni', vmin=-2, vmax=4)
flipped_data = flip(x, data) # flipped_data = flip(x, data)
assert(check_almost_equality(x, data, flipped_data)) # assert(check_almost_equality(x, data, flipped_data))
#
# syn # # syn
data = x.get_random_values(random='syn', # data = x.get_random_values(random='syn',
spec=lambda x: 42 / (1 + x)**3) # spec=lambda x: 42 / (1 + x)**3)
flipped_data = flip(x, data) # flipped_data = flip(x, data)
assert(check_almost_equality(x, data, flipped_data)) # assert(check_almost_equality(x, data, flipped_data))
############################################################################### ###############################################################################
......
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