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Commit 5c0e173d authored by Theo Steininger's avatar Theo Steininger
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Updated Dockerfile

parent ab51aa24
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Showing with 54 additions and 21 deletions
docker/Dockerfile
View file @ 5c0e173d
FROM python:2.7-wheezy
FROM ubuntu:latest
RUN apt-get update
RUN apt-get install -y build-essential python python-pip python-dev git gfortran autoconf gsl-bin libgsl-dev wget unzip
RUN pip install numpy scipy cython astropy ipython
RUN mkdir /home/Downloads
WORKDIR /home/Downloads
......@@ -12,7 +17,7 @@ WORKDIR ..
#FFTW
RUN wget http://www.fftw.org/fftw-3.3.5.tar.gz && tar xzf fftw-3.3.5.tar.gz
WORKDIR fftw-3.3.5
RUN ./configure --enable-threads --enable-shared --prefix=/usr/local/ && make && make install
RUN ./configure --enable-threads --enable-openmp --enable-shared --prefix=/usr/local/ && make && make install
WORKDIR ..
#GSL
......@@ -32,9 +37,13 @@ WORKDIR ..
ENV HEALPIX_TARGET optimized_gcc
ENV HEALPIX /home/Downloads/Healpix_3.31
#healpy
RUN pip install healpy
#Hammurabi
RUN wget http://downloads.sourceforge.net/project/hammurabicode/hammurabi_v3.01.tar.gz && tar xzf hammurabi_v3.01.tar.gz
WORKDIR hammurabicode-code
RUN wget https://sourceforge.net/code-snapshots/svn/h/ha/hammurabicode/code/hammurabicode-code-41-trunk.zip
RUN unzip hammurabicode-code-41-trunk.zip
WORKDIR hammurabicode-code-41-trunk
COPY hammurabi_Makefile Makefile
RUN [ -r /root/.healpix/3_31_Linux/config ] && . /root/.healpix/3_31_Linux/config && make hammurabi && make clean
WORKDIR ..
......@@ -46,7 +55,8 @@ RUN apt-get update && apt-get install -y libblas3 libblas-dev \
cmake \
build-essential \
git \
gfortran
gfortran\
python-tk
#RUN apt-get install -y libopenmpi-dev openmpi-bin openmpi-doc
RUN pip install numpy scipy matplotlib progressbar ipython
......@@ -60,11 +70,26 @@ WORKDIR PyMultiNest
RUN python setup.py install
WORKDIR ..
#mpi4py
RUN apt-get install -y libopenmpi-dev openmpi-bin openmpi-doc
RUN pip install mpi4py
RUN pip install mpi4py
#hdf5
RUN apt-get install -y libhdf5-10 libhdf5-dev libhdf5-openmpi-10 libhdf5-openmpi-dev hdf5-tools
#h5py
RUN wget https://api.github.com/repos/h5py/h5py/tags -O - | grep tarball_url | grep -v rc | head -n 1 | cut -d '"' -f 4 | wget -i - -O h5py.tar.gz
RUN mkdir h5py
RUN tar xzf h5py.tar.gz -C h5py --strip-components=1
WORKDIR h5py
ENV CC=mpicc
ENV HDF5_DIR=/usr/lib/x86_64-linux-gnu/hdf5/openmpi
RUN python setup.py configure --mpi
RUN python setup.py build
RUN python setup.py install
WORKDIR ..
RUN pip install cython healpy
#NIFTy
RUN git clone https://gitlab.mpcdf.mpg.de/ift/NIFTy.git -b master
WORKDIR NIFTy
RUN python setup.py install
......
docker/hammurabi_Makefile
View file @ 5c0e173d
......@@ -34,7 +34,7 @@ CFITSIO = /usr/local
#
GALPROP = $(BASE_DIR)/galprop/galprop/build
CCFITS = $(BASE_DIR)/ccfits/CCfits//build/
CLHEP = $(BASE_DIR)/clhep/2.0.4.5/CLHEP/build/
CLHEP = $(BASE_DIR)/clhep/clhep/build/
#
# What c++ compiler you are using?
......@@ -42,7 +42,7 @@ CLHEP = $(BASE_DIR)/clhep/2.0.4.5/CLHEP/build/
CXX = g++
#
# On OSX, maybe
#CXX = g++-mp-4.3
#CXX = g++-mp-5
#
# Compile options? 64bit system (-m64), optimization (-O2), openMP (-fopenmp), warnings (-Wall), etc.
......@@ -58,7 +58,7 @@ CXXFLAGS = -m64 -O2 -fopenmp -Wall
FC = gfortran
#
# On OSX, maybe
#FC = gfortran-mp-4.3
#FC = gfortran-mp-5
# For gfortran
FCFLAGS = -O2 -ffixed-form -ffixed-line-length-132 -c
......@@ -77,9 +77,10 @@ LFORTFLAGS= -Df2cFortran
#
# Additional options depending on how you want to run:
#
# Use openMP ? (Even for hammurabi.debug, at link stage, need this if HEALPix compiled with it.)
LFLAGS_CUSTOM = -fopenmp
# Use openMP. Right now, this is mandatory. (Contact
# trjaffe@gmail.com for help compiling without if for some reason you
# need it.)
LFLAGS_CUSTOM = -fopenmp
#
# OSX with gfortran-mp-4.3
#LFLAGS_CUSTOM = -fopenmp -lgcc_s.1
......@@ -125,10 +126,10 @@ hammurabi.debug : CXXFLAGS+= $(ALL_INC) -c -DGALDEF_PATH=\"./GALDEF\" -DFITSDATA
libhamprop.a: CXXFLAGS+= $(ALL_INC) -c -DGALDEF_PATH=\"./GALDEF\" -DFITSDATA_PATH=\"./FITS/\" -DDATA_PATH=\"./DATA\" -DLIBHAMPROP -DGALPROP -DNE2001
hammurabi: LFLAGS = $(ALL_L) -lhammurabi -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 $(LFLAGS_CUSTOM)
hammurabi.ne2001: LFLAGS = $(ALL_L) -lhammurabi -lNE2001 -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lgfortran $(LFLAGS_CUSTOM)
hammurabi.debug: LFLAGS = $(ALL_L) -lhammurabi -lNE2001 -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lgfortran -lgalprop -lskymap -lCCfits -lCLHEP $(LFLAGS_CUSTOM)
hammurabi.galprop: LFLAGS = $(ALL_L) -lhammurabi -lNE2001 -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lgfortran -lgalprop -lskymap -lCCfits -lCLHEP $(LFLAGS_CUSTOM)
hammurabi: LFLAGS = $(ALL_L) -lhammurabi -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lfftw3_omp $(LFLAGS_CUSTOM)
hammurabi.ne2001: LFLAGS = $(ALL_L) -lhammurabi -lNE2001 -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lfftw3_omp -lgfortran $(LFLAGS_CUSTOM)
hammurabi.debug: LFLAGS = $(ALL_L) -lhammurabi -lNE2001 -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lfftw3_omp -lgfortran -lgalprop -lskymap -lCCfits -lCLHEP $(LFLAGS_CUSTOM)
hammurabi.galprop: LFLAGS = $(ALL_L) -lhammurabi -lNE2001 -lhealpix_cxx -lcxxsupport -lc_utils -lfftpack -lcfitsio -lgsl -lgslcblas -lm -lfftw3 -lfftw3_omp -lgfortran -lgalprop -lskymap -lCCfits -lCLHEP $(LFLAGS_CUSTOM)
......@@ -173,7 +174,10 @@ hammurabi.galprop: $(HAMMURABI_OBJ) $(NE2001_OBJ) $(NE2001_DATA) libNE2001.a li
hammurabi.debug: $(HAMMURABI_OBJ) $(NE2001_DATA) libNE2001.a libhammurabi.a run hammurabi.o
$(CXX) -o run/hammurabi.debug hammurabi.o $(LFLAGS) $(LFORTFLAGS)
ifeq ($(OSTYPE),darwin)
install_name_tool -change "@rpath/libCLHEP-2.3.3.1.dylib" "$(CLHEP)/lib/libCLHEP-2.3.3.1.dylib" run/hammurabi.debug
endif
print_constants: print_constants.o
$(CXX) -o run/print_constants print_constants.o
......@@ -186,7 +190,7 @@ libhammurabi.a: $(HAMMURABI_OBJ)
clean:
rm *a *.o
rm *.a *.o
test:
(cd unit_test; ./test.csh)
......@@ -196,4 +200,8 @@ test_big:
tarfile:
tar cvzf hammurabi.tgz *cpp *h Makefile *.f README
tar cvzf hammurabi.tgz *cpp *h Makefile *.f README hampy
unittar:
tar cvzf hammurabi_unit_test.tgz unit_test/inputs unit_test/GALDEF unit_test/FITS unit_test/negrid_n400.bin unit_test/ref.mini unit_test/ref unit_test/ref.big
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