Commit 537ff73f authored by Theo Steininger's avatar Theo Steininger
Browse files

Started to implement the hammurapy observer classes.

parent 44b10efa
# -*- coding: utf-8 -*-
import abc
import os
import tempfile
import healpy
from nifty import Field, FieldArray, HPSpace
from imagine.magnetic_fields.magnetic_field import MagneticField
from import Observer
class HammurapyBase(Observer):
def __init__(self, hammurabi_executable, conf_directory='./confs',
self.hammurabi_executable = os.path.abspath(hammurabi_executable)
self.conf_directory = os.path.abspath(conf_directory)
self.working_directory = os.path.abspath(working_directory)
self.last_call_log = ""
self.basic_parameters = {'obs_shell_index_numb': '1',
'total_shell_numb': '1',
'obs_NSIDE': '128',
'vec_size_R': '100',
'max_radius': '35',
'B_field_transform_lon': '-999',
'B_field_transform_lat': '-999',
'TE_grid_filename': 'negrid_n400.bin',
'TE_nx': '400',
'TE_ny': '400',
'TE_nz': '80',
'B_field_do_random': 'T',
'B_ran_mem_lim': '4',
'do_sync_emission': 'T',
'do_rm': 'T',
'do_dm': 'F',
'do_dust': 'F',
'do_tau': 'F',
'do_ff': 'F'}
def valid_magnetic_field_descriptor(self):
return []
def check_magnetic_field_descriptor(self, magnetic_field):
for d in self.valid_magnetic_field_descriptor:
if d not in magnetic_field.descriptor:
raise TypeError(
"Given magnetic field does not match the "
"needed descriptor of Hammurapy-Class: "
"%s vs. %s" % (str(self.valid_magnetic_field_descriptor),
def _make_temp_folder(self):
prefix = os.path.join(self.working_directory, 'temp_hammurabi_')
return tempfile.mkdtemp(prefix=prefix)
def _make_parameter_file(self, working_directory, resolution, dimensions,
# setup the default parameters
parameters_dict = {'B_field_lx': dimensions[0],
'B_field_ly': dimensions[1],
'B_field_lz': dimensions[2],
'B_field_nx': int(resolution[0]),
'B_field_ny': int(resolution[1]),
'B_field_nz': int(resolution[2]),
if self.parameters_dict['do_sync_emission'] == 'T':
obs_sync_file_name = os.path.join(working_directory,
parameters_dict['obs_file_name'] = obs_sync_file_name
if self.parameters_dict['do_rm'] == 'T':
obs_RM_file_name = os.path.join(working_directory, 'rm.fits')
parameters_dict['obs_RM_file_name'] = obs_RM_file_name
if self.parameters_dict['do_dm'] == 'T':
obs_DM_file_name = os.path.join(working_directory,
parameters_dict['obs_DM_file_name'] = obs_DM_file_name
if self.parameters_dict['do_dust'] == 'T':
obs_dust_file_name = os.path.join(working_directory,
parameters_dict['obs_dust_file_name'] = obs_dust_file_name
if self.parameters_dict['do_tau'] == 'T':
obs_tau_file_name = os.path.join(working_directory,
parameters_dict['obs_tau_file_name'] = obs_tau_file_name
if self.parameters_dict['do_ff'] == 'T':
obs_ff_file_name = os.path.join(working_directory,
parameters_dict['obs_ff_file_name'] = obs_ff_file_name
# ammend the parameters_dict
# add custom parameters
parameters_string = ''
for item in parameters_dict:
parameters_string += item + '=' + str(parameters_dict[item]) + '\n'
parameters_file_path = os.path.join(working_directory,
with open(parameters_file_path, 'wb') as config_file:
def _build_observables(self, temp_folder):
observables = {}
if self.parameters_dict['do_sync_emission'] == 'T':
[sync_I, sync_Q, sync_U] = self._read_fits_file(temp_folder,
logger.debug('Read the sync_map')
observables['sync_observable'] = {'sync_I': sync_I,
'sync_Q': sync_Q,
'sync_U': sync_U}
if self.parameters_dict['do_rm'] == 'T':
[rm_map] = self._read_fits_file(temp_folder, 'rm.fits')
logger.debug('Read the rm_map')
observables['rm_observable'] = {'rm_map': rm_map}
if self.parameters_dict['do_dm'] == 'T':
[dm_map] = self._read_fits_file(temp_folder, 'dm.fits')
logger.debug('Read the dm_map')
observables['dm_observable'] = {'dm_map': dm_map}
if self.parameters_dict['do_dust'] == 'T':
[dust_I, dust_Q, dust_U] = self._read_fits_file(temp_folder,
logger.debug('Read the dust_map')
observables['dust_observable'] = {'dust_I': dust_I,
'dust_Q': dust_Q,
'dust_U': dust_U}
if self.parameters_dict['do_tau'] == 'T':
[tau_map] = self._read_fits_file(temp_folder, 'tau.fits')
logger.debug('Read the tau_map')
observables['tau_observable'] = {'tau_map': tau_map}
if self.parameters_dict['do_ff'] == 'T':
[ff_map] = self._read_fits_file(temp_folder, 'free.fits')
logger.debug('Read the ff_map')
observables['ff_observable'] = {'ff_map': ff_map}
return observables
def _read_fits_file(self, path, name):
map_path = os.path.join(path, name)
result_list = []
i = 0
while True:
loaded_map = healpy.read_map(map_path, verbose=False,
loaded_map = healpy.ud_grade(loaded_map, nside_out=128)
result_list += [loaded_map]
i += 1
except IndexError:
return result_list
def _call_hammurabi(self, path):
parameters_file_path = os.path.join(path, 'parameters.txt')
temp_process = subprocess.Popen([self.hammurabi_executable,
self.last_call_log = temp_process.communicate()[0]
def _remove_folder(self, path):
# Try multiple times in order to overcome 'Directory not empty' errors
# Hopefully open file handles get closed in the meantime
n = 0
while n < 10:
temp_process = subprocess.Popen(['rm', '-rf', path],
# wait until process is finished
errlog = temp_process.communicate()[1]
# check if there were some errors
if errlog == '':
logger.warning('Could not delete %s', path)
\ No newline at end of file
# -*- coding: utf-8 -*-
from hammurapy_base import HammurapyBase
class HammurapyJF12(HammurapyBase):
def valid_magnetic_field_descriptor(self):
d = super(HammurapyJF12, self).valid_magnetic_field_descriptor
d += ['JF12']
return d
# -*- coding: utf-8 -*-
from keepers import Loggable
class Observer(object):
class Observer(Loggable, object):
def observe(magnetic_field):
raise NotImplementedError
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment