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Commit 141d2f2a authored by Theo Steininger's avatar Theo Steininger
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updated default_parameters.xml to newest version.

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imagine/likelihoods/__init__.py
View file @ 141d2f2a
......@@ -2,3 +2,4 @@
from likelihood import Likelihood
from ensemble_likelihood import *
from simple_likelihood import SimpleLikelihood
imagine/likelihoods/simple_likelihood/__init__.py
View file @ 141d2f2a
# -*- coding: utf-8 -*-
from simple_likelihood import SimpleLikelihood
imagine/observers/hammurapy/input/default_parameters.xml
View file @ 141d2f2a
......@@ -4,15 +4,14 @@
<!-- email, jiwang@sissa.it -->
<!-- "cue", switches for usage -->
<root>
<Output>
<!-- observable output -->
<Obsout>
</Output>
</Obsout>
<!-- physical field grid in/out -->
<!-- resolution defined in './Grid/Box' -->
<!-- CRE field resolution defined in './CRE/Numeric' -->
<Interface>
<Fieldout>
<!-- regular magnetic field -->
<breg_grid read="0" write="0" filename="breg.bin"/>
<!-- turbulent magnetic field -->
......@@ -23,21 +22,21 @@
<fernd_grid read="0" write="0" filename="fernd.bin"/>
<!-- cosmic ray electron field -->
<cre_grid read="0" write="0" filename="cre.bin"/>
</Interface>
</Fieldout>
<!-- main field grid -->
<Grid type="3D">
<!-- field & observable grid -->
<Grid>
<SunPosition>
<x value="-8.3"/> <!-- kpc -->
<y value="0"/> <!-- kpc -->
<z value="6"/> <!-- pc -->
</SunPosition>
<!-- field grid -->
<Box>
<!-- grid vertex number -->
<nx value="400"/>
<ny value="400"/>
<nz value="80"/>
<nx value="800"/>
<ny value="800"/>
<nz value="160"/>
<!-- box limit, in Galactic-centric frame -->
<x_min value="-20.0"/> <!-- kpc -->
<x_max value="20.0"/> <!-- kpc -->
......@@ -49,214 +48,219 @@
<!-- LOS integration setting -->
<Integration>
<shell type="auto">
<!-- default setting of shells -->
<auto>
<shell_num value="1"/> <!-- total shell number -->
<nside_min value="64"/> <!-- inner most shell resolution -->
<nside_min value="32"/> <!-- inner most shell resolution -->
</auto>
<!-- set shell resolution from inside out -->
<!-- total shell number calculated automatically -->
<manual>
<manual> <!-- total shell number calculated automatically -->
<nside value="32"/> <!-- inner most shell Nside -->
<nside value="16"/>
</manual>
</shell>
<nside_sim value="64"/> <!-- output map resolution -->
<nside_sim value="32"/> <!-- output map resolution -->
<!-- maximum radius in earth/Galactic centric frame -->
<ec_r_max value="30.0"/> <!-- kpc -->
<gc_r_max value="20.0"/> <!-- kpc -->
<!-- maximum height in galactic centric frame -->
<gc_z_max value="10.0"/> <!-- kpc -->
<!-- radial resolution -->
<ec_r_res value="0.1"/> <!-- kpc -->
<ec_r_res value="0.5"/> <!-- kpc -->
<!-- galactic latitude lower limit -->
<lat_lim value="0."/> <!-- [0,90] -->
</Integration>
</Grid>
<!-- galaxy settings -->
<Galaxy>
<!-- magnetic fields -->
<MagneticField>
<!-- regular fields -->
<Regular type="WMAP">
<!-- WMAP3yr -->
<WMAP>
<b0 value="2.0"/>
<psi0 value="27.0"/>
<psi1 value="0.9"/>
<chi0 value="25.0"/>
</WMAP>
<!-- verification -->
<Verify>
<b0 value="2.0"/>
<l0 value="70"/>
<r value="0.3"/>
</Verify>
</Regular>
<!-- turbulent fields -->
<!-- seed works for IMAGINE -->
<Random cue="0" type="Anisolocal" seed="0">
<!-- isotropic -->
<Iso>
<rms value="0.1"/> <!-- norm at k0 -->
<k0 value="0.5"/> <!-- cutoff, 1/(Lambda in kpc) -->
<a0 value="1.7"/> <!-- 5/3, Kolmogorov -->
</Iso>
<!-- global anisotropy -->
<Anisoglob>
<rho value="0.5"/>
</Anisoglob>
<!-- local turbulent -->
<Anisolocal>
<rms value="1"/> <!-- Alfven RMS -->
<rf value="1.0"/> <!-- fast to Alfven ratio -->
<rs value="1.0"/> <!-- slow to Alfven ratio -->
<aa0 value="1.7"/> <!-- Kolmogorov -->
<af0 value="1.5"/>
<as0 value="1.7"/>
<k0 value="0.5"/> <!-- cutoff, 1/(Lambda in kpc) -->
<beta value="0.1"/> <!-- plasma beta -->
<ma value="0.5"/> <!-- Alfven Mach number -->
</Anisolocal>
<!-- magnetic fields -->
<MagneticField>
<!-- regular fields -->
<Regular type="WMAP">
<!-- WMAP LSA -->
<WMAP>
<b0 value="1.2"/> <!-- microG -->
<psi0 value="27.0"/> <!-- deg -->
<psi1 value="0.9"/> <!-- deg -->
<chi0 value="25.0"/> <!-- deg -->
</WMAP>
<!-- Jaffe -->
<Jaffe>
<quadruple cue="0"/> <!-- quadruple pattern in halo -->
<bss cue="0"/> <!-- bi-symmetric -->
<disk_amp value="0.167"/> <!-- disk amplitude, microG -->
<disk_z0 value="0.1"/> <!-- disk height scale, kpc -->
<halo_amp value="1.38"/> <!-- halo amplitude, microG -->
<halo_z0 value="3.0"/> <!-- halo height scale, kpc -->
<r_inner value="0.5"/> <!-- inner R scale, kpc -->
<r_scale value="20"/> <!-- R scale, kpc -->
<r_peak value="0"/> <!-- R peak, kpc -->
<ring cue="0"/> <!-- molecular ring -->
<bar cue="1"/> <!-- elliptical bar -->
<!-- either ring or bar -->
<ring_amp value="0.023"/> <!-- ring field amplitude, microG -->
<ring_r value="5.0"/> <!-- ring radius, kpc -->
<bar_amp value="0.023"/> <!-- bar field amplitude, microG -->
<bar_a value="5.0"/> <!-- major scale, kpc -->
<bar_b value="3.0"/> <!-- minor scale, kpc -->
<bar_phi0 value="45.0"/> <!-- bar major direction -->
<arm_num value="4"/> <!-- spiral arms -->
<arm_r0 value="7.1"/> <!-- arm ref radius -->
<arm_z0 value="0.1"/> <!-- arm heigth scale, kpc -->
<arm_phi1 value="70"/> <!-- arm ref angles, deg -->
<arm_phi2 value="160"/>
<arm_phi3 value="250"/>
<arm_phi4 value="340"/>
<arm_amp1 value="2"/> <!-- arm field amplitudes, microG -->
<arm_amp2 value="0.133"/>
<arm_amp3 value="-3.78"/>
<arm_amp4 value="0.32"/>
<arm_pitch value="11.5"/> <!-- pitch angle, deg -->
<comp_c value="0.5"/> <!-- compress factor -->
<comp_d value="0.3"/> <!-- arm cross-sec scale, kpc -->
<comp_r value="12"/> <!-- radial cutoff scale, kpc -->
<comp_p value="3"/> <!-- cutoff power -->
</Jaffe>
<!-- verification -->
<Verify>
<b0 value="2.0"/> <!-- microG -->
<l0 value="70"/> <!-- deg -->
<r value="0.3"/>
</Verify>
</Regular>
<!-- turbulent fields -->
<Random cue="0" type="Local" seed="0">
<!-- global anisotropy -->
<Global>
<rms value="0.8"/> <!-- RMS at k0 -->
<k0 value="0.5"/> <!-- cutoff, 1/(Lambda in kpc) -->
<a0 value="1.7"/> <!-- 5/3, Kolmogorov -->
<rho value="0.5"/> <!-- [0,1] -->
<!-- energy density rescaling -->
<Rescal>
<r0 value="8.0"/> <!-- in kpc -->
<z0 value="1.0"/> <!-- in kpc -->
</Rescal>
</Random>
</MagneticField>
<!-- free electron field -->
<FreeElectron>
<Regular type="YMW16">
<!-- YMW16 -->
<YMW16>
<Warp>
<R_warp value="8.4"/>
<Gamma_w value="0.14"/>
<R0 value="8.3"/>
</Warp>
<ThickDisk>
<Ad value="2500"/>
<Bd value="15000"/>
<n1 value="0.01132"/>
<H1 value="1673"/>
</ThickDisk>
<ThinDisk>
<A2 value="1200"/>
<B2 value="4000"/>
<n2 value="0.404"/>
<K2 value="1.54"/>
</ThinDisk>
<!-- using HH14 SpiralArms -->
<SpiralArm>
<B2s value="4000"/>
<Ele_arm_0 value="0.135000"/>
<Ele_arm_1 value="0.129000"/>
<Ele_arm_2 value="0.103000"/>
<Ele_arm_3 value="0.116000"/>
<Ele_arm_4 value="0.005700"/>
<Wid_arm_0 value="300"/>
<Wid_arm_1 value="500"/>
<Wid_arm_2 value="300"/>
<Wid_arm_3 value="500"/>
<Wid_arm_4 value="300"/>
<Aa value="11680"/>
<Ka value="5.015"/>
<ncn value="2.4"/>
<wcn value="8.2"/>
<thetacn value="109"/>
<nsg value="0.626"/>
<wsg value="20"/>
<thetasg value="75.8"/>
</SpiralArm>
<GalCenter>
<ngc value="6.2"/>
<Agc value="160"/>
<Hgc value="35"/>
</GalCenter>
<GumNebula>
<ngn value="1.84"/>
<Wgn value="15.1"/>
<Agn value="125.8"/>
<Kgn value="1.4"/>
</GumNebula>
<LocalBubble>
<J_LB value="0.480"/>
<nlb1 value="1.094"/>
<detlb1 value="28.4"/>
<wlb1 value="14.2"/>
<hlb1 value="112.9"/>
<thetalb1 value="195.4"/>
<nlb2 value="2.33"/>
<detlb2 value="14.7"/>
<wlb2 value="15.6"/>
<hlb2 value="43.6"/>
<thetalb2 value="278.2"/>
</LocalBubble>
<LoopI>
<nLI value="1.907"/>
<RLI value="80.0"/>
<WLI value="15.0"/>
<detthetaLI value="30.0"/>
<thetaLI value="40.0"/>
</LoopI>
</YMW16>
<!-- verification -->
<Verify>
<n0 value="0.01"/> <!-- pccm -->
<r0 value="3.0"/> <!-- kpc -->
</Verify>
</Regular>
<!-- turbulent free electron -->
<Random cue="0" type="Iso" seed="0">
<Iso>
<rms value="1.0"/>
<k0 value="2.0"/> <!-- cutoff 1/Lambda in kpc -->
<a0 value="-1.7"/>
</Iso>
<r0 value="8.0"/> <!-- in kpc -->
<z0 value="1.0"/> <!-- in kpc -->
</Global>
<!-- local turbulent -->
<Local>
<pa0 value="1"/> <!-- Alfven power norm at k0 -->
<pf0 value="1"/> <!-- fast power norm at k0 -->
<ps0 value="1"/> <!-- slow power norm at k0 -->
<aa0 value="1.7"/> <!-- Kolmogorov -->
<af0 value="1.5"/>
<as0 value="1.7"/>
<k0 value="0.5"/> <!-- cutoff, 1/(Lambda in kpc) -->
<beta value="0.1"/> <!-- plasma beta -->
<ma value="0.5"/> <!-- Alfven Mach number -->
</Local>
<!-- Jaffe turbulent -->
<Jaffe>
</Jaffe>
</Random>
</MagneticField>
<!-- free electron field -->
<FreeElectron>
<Regular type="YMW16">
<!-- YMW16 -->
<YMW16>
<Warp>
<R_warp value="8.4"/> <!-- Galactic warp, kpc -->
<Gamma_w value="0.14"/> <!-- warp ratio -->
<R0 value="8.3"/> <!-- Sun radial position, kpc -->
</Warp>
<ThickDisk>
<Ad value="2500"/>
<Bd value="15000"/>
<n1 value="0.01132"/>
<H1 value="1673"/>
</ThickDisk>
<ThinDisk>
<A2 value="1200"/>
<B2 value="4000"/>
<n2 value="0.404"/>
<K2 value="1.54"/>
</ThinDisk>
<!-- using HH14 SpiralArms -->
<SpiralArm>
<B2s value="4000"/>
<Ele_arm_0 value="0.135000"/>
<Ele_arm_1 value="0.129000"/>
<Ele_arm_2 value="0.103000"/>
<Ele_arm_3 value="0.116000"/>
<Ele_arm_4 value="0.005700"/>
<Wid_arm_0 value="300"/>
<Wid_arm_1 value="500"/>
<Wid_arm_2 value="300"/>
<Wid_arm_3 value="500"/>
<Wid_arm_4 value="300"/>
<Aa value="11680"/>
<Ka value="5.015"/>
<ncn value="2.4"/>
<wcn value="8.2"/>
<thetacn value="109"/>
<nsg value="0.626"/>
<wsg value="20"/>
<thetasg value="75.8"/>
</SpiralArm>
<GalCenter>
<ngc value="6.2"/>
<Agc value="160"/>
<Hgc value="35"/>
</GalCenter>
<GumNebula>
<ngn value="1.84"/>
<Wgn value="15.1"/>
<Agn value="125.8"/>
<Kgn value="1.4"/>
</GumNebula>
<LocalBubble>
<J_LB value="0.480"/>
<nlb1 value="1.094"/>
<detlb1 value="28.4"/>
<wlb1 value="14.2"/>
<hlb1 value="112.9"/>
<thetalb1 value="195.4"/>
<nlb2 value="2.33"/>
<detlb2 value="14.7"/>
<wlb2 value="15.6"/>
<hlb2 value="43.6"/>
<thetalb2 value="278.2"/>
</LocalBubble>
<LoopI>
<nLI value="1.907"/>
<RLI value="80.0"/>
<WLI value="15.0"/>
<detthetaLI value="30.0"/>
<thetaLI value="40.0"/>
</LoopI>
</YMW16>
<!-- verification -->
<Verify>
<n0 value="0.01"/> <!-- pccm -->
<r0 value="3.0"/> <!-- kpc -->
</Verify>
</Regular>
<!-- turbulent free electron -->
<Random cue="0" type="Global" seed="0">
<Global>
<rms value="1.0"/>
<k0 value="2.0"/> <!-- cutoff 1/Lambda in kpc -->
<a0 value="-1.7"/>
<!-- field strength rescaling -->
<Rescal>
<r0 value="8.0"/> <!-- in kpc -->
<z0 value="1.0"/> <!-- in kpc -->
</Rescal>
</Random>
</FreeElectron>
<!-- spiral arms setting -->
<SpiralArms type="HH14">
<!-- Hou & Han, A&A 569 A125 (2014), used in YMW16, R0=8.3 -->
<HH14>
<NumArms value="5"/>
<R_1 value="3.35"/> <!-- Noma-Outer Arm -->
<R_2 value="3.71"/> <!-- Peseus Arm -->
<R_3 value="3.56"/> <!-- Carina-Segittarius Arm -->
<R_4 value="3.67"/> <!-- Crux-Scutum Arm -->
<R_5 value="8.21"/> <!-- Local Arm -->
<phi_1 value="44.4"/>
<phi_2 value="120.0"/>
<phi_3 value="218.6"/>
<phi_4 value="330.3"/>
<phi_5 value="55.1"/>
<psi_1 value="11.43"/>
<psi_2 value="9.84"/>
<psi_3 value="10.38"/>
<psi_4 value="10.64"/>
<psi_5 value="2.77"/>
</HH14>
</SpiralArms>
</Galaxy>
<r0 value="8.0"/> <!-- in kpc -->
<z0 value="1.0"/> <!-- in kpc -->
</Global>
<Local>
</Local>
</Random>
</FreeElectron>
<!-- analytic/numeric CRE -->
<CRE type="Analytic">
<!-- verification -->
<Verify>
<alpha value="3.0"/>
<r0 value="3.0"/> <!-- kpc -->
<je value="0.25"/> <!-- local CRE flux norm factor @ 10GeV -->
</Verify>
<Analytic>
<!-- CRE spectral index: -alpha+beta*r+theta*z, Galactic cylindric frame -->
<alpha value="3.0"/>
......@@ -274,7 +278,7 @@
<nx value="80"/> <!-- silent if type="2D" -->
<ny value="80"/> <!-- silent if type="2D" -->
<!-- box limit, in Galactic-centric frame -->
<!-- grid setting -->
<r_max value="20.0"/> <!-- kpc -->
<x_min value="0.0"/> <!-- kpc -->
<x_max value="0.0"/> <!-- kpc -->
......@@ -288,6 +292,12 @@
<E_max value="100.0"/> <!-- GeV -->
<E_fact value="0.1"/> <!-- dimensionless -->
</Numeric>
<!-- verification -->
<Verify>
<alpha value="3.0"/>
<r0 value="3.0"/> <!-- cutoff radius, kpc -->
<je value="0.25"/> <!-- local CRE flux norm factor @ 10GeV -->
</Verify>
</CRE>
</root>
imagine/observers/hammurapy/model_mixins/wmap3yr_mixin.py
View file @ 141d2f2a
......@@ -7,9 +7,9 @@ from imagine.magnetic_fields.wmap3yr_magnetic_field import WMAP3yrMagneticField
class WMAP3yrMixin(MagneticFieldModel):
def update_parameter_xml(self, root):
custom_parameters = [
['./Galaxy/MagneticField/Regular', 'type', 'WMAP'],
['./Galaxy/MagneticField/Random', 'cue', '1'],
['./Galaxy/MagneticField/Random', 'type', 'Anisoglob']]
['./MagneticField/Regular', 'type', 'WMAP'],
['./MagneticField/Random', 'cue', '1'],
['./MagneticField/Random', 'type', 'Global']]
for parameter in custom_parameters:
root.find(parameter[0]).set(parameter[1], str(parameter[2]))
......
imagine/observers/hammurapy/observable_mixins/dm_mixin.py
View file @ 141d2f2a
......@@ -17,5 +17,5 @@ class DMMixin(ObservableMixin):
def update_parameter_xml(self, root):
element = et.Element('DM', {'cue': '1',
'filename': self.obs_name+'.fits'})
output = root.find('Output')
output = root.find('Obsout')
output.append(element)
imagine/observers/hammurapy/observable_mixins/fd_mixin.py
View file @ 141d2f2a
......@@ -17,5 +17,5 @@ class FDMixin(ObservableMixin):
def update_parameter_xml(self, root):
element = et.Element('Faraday', {'cue': '1',
'filename': self.obs_name+'.fits'})
output = root.find('Output')
output = root.find('Obsout')
output.append(element)
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