Added fftw tests.

.gitlab-ci.yml

@@ -18,6 +18,17 @@ test_mpi:
   - mpirun -n 2 nosetests
   - mpirun -n 5 nosetests
 
-#  - pip install cython
-#  - chmod +x continuous_integration/install_h5py.sh
-#  - continuous_integration/install_h5py.sh
+test_mpi_fftw:
+  script:
+  - continuous_integration/install_mpi.sh
+  - continuous_integration/install_fftw.sh
+  - python setup.py install
+  - mpirun -n 2 nosetests
+
+test_mpi_hdf5:
+  script:
+  - continuous_integration/install_mpi.sh
+  - continuous_integration/install_h5py.sh
+  - python setup.py install
+  - mpirun -n 2 nosetests
+

continuous_integration/install_fftw.sh

+#!/bin/bash
+
+pip install cython
+
+apt-get install -y libfftw3-3 libfftw3-bin libfftw3-dev libfftw3-mpi-dev libfftw3-mpi3
+git clone -b mpi https://github.com/fredRos/pyFFTW.git
+cd pyFFTW/
+#export LDFLAGS="-L/usr/include"
+#export CFLAGS="-I/usr/include"
+CC=mpicc python setup.py build_ext install
+cd ..

continuous_integration/install_h5py.sh

 #!/bin/bash
+pip install cython
+
+apt-get update -qy
 apt-get install -y libhdf5-openmpi-dev
+
 curl -s https://api.github.com/repos/h5py/h5py/tags | grep tarball_url | head -n 1 | cut -d '"' -f 4 | wget -i - -O h5py.tar.gz
 tar xzf h5py.tar.gz
 cd h5py-h5py*

continuous_integration/install_mpi.sh

+#!/bin/bash
+
 apt-get update -qy
 apt-get install -y openmpi-bin libopenmpi-dev
 pip install mpi4py