ELPA 2014.06.004 Optional usage of detailed timings

At build time it can be specified that the ELPA test
programs give more detailed timing information, which
is usefull for performace measurements

ELPA_2014.06/Makefile.am

@@ -11,6 +11,18 @@ libelpa@SUFFIX@_la_LINK = $(FCLINK) $(AM_LDFLAGS) -version-info $(ELPA_SO_VERSIO
 
 libelpa@SUFFIX@_la_SOURCES = src/elpa1.F90 src/elpa2.F90
 
+if HAVE_DETAILED_TIMINGS
+  libelpa@SUFFIX@_la_SOURCES += src/timer.F90 \
+                                src/ftimings/ftimings.F90 \
+                                src/ftimings/ftimings_type.F90 \
+                                src/ftimings/ftimings_value.F90 \
+                                src/ftimings/highwater_mark.c \
+                                src/ftimings/resident_set_size.c \
+                                src/ftimings/time.c \
+                                src/ftimings/virtual_memory.c \
+                                src/ftimings/papi.c
+endif
+
 if WITH_REAL_GENERIC_KERNEL
   libelpa@SUFFIX@_la_SOURCES +=  src/elpa2_kernels/elpa2_kernels_real.f90
 endif

ELPA_2014.06/config.h.in

 /* config.h.in.  Generated from configure.ac by autoheader.  */
 
+/* Enable more timings */
+#undef HAVE_DETAILED_TIMINGS
+
 /* Define to 1 if you have the <dlfcn.h> header file. */
 #undef HAVE_DLFCN_H
 
@@ -12,6 +15,9 @@
 /* can use module iso_fortran_env */
 #undef HAVE_ISO_FORTRAN_ENV
 
+/* Use the PAPI library */
+#undef HAVE_LIBPAPI
+
 /* Define to 1 if you have the <memory.h> header file. */
 #undef HAVE_MEMORY_H
 

ELPA_2014.06/configure.ac

 AC_PREREQ([2.69])
 
-AC_INIT([elpa],[2014.06.003], [elpa-library@rzg.mpg.de])
+AC_INIT([elpa],[2014.06.004], [elpa-library@rzg.mpg.de])
 AC_SUBST([PACKAGE_VERSION])
 
 AC_CONFIG_SRCDIR([src/elpa1.F90])
@@ -100,6 +100,15 @@ install_complex_bgq=no
 install_complex_avx_block1=no
 install_complex_avx_block2=no
 
+dnl build with ftimings support
+AC_MSG_CHECKING(whether ELPA should be build with ftimings support)
+AC_ARG_WITH([ftimings],
+		AS_HELP_STRING([--with-ftimings],
+			       [detailed timings, default no.]),
+	      [with_ftimings=yes],
+	      [with_ftimings=no])
+AC_MSG_RESULT([${with_ftimings}])
+
 dnl build with the possibilty to redirect stdout and stderr
 dnl per MPI task in a file
 AC_MSG_CHECKING(whether stdout/stderr file redirect should be enabled)
@@ -114,7 +123,28 @@ if test x"${with_redirect}" = x"yes"; then
   AC_DEFINE([HAVE_REDIRECT], [1], [Redirect stdout and stderr of test programs per MPI tasks to a file])
 fi
 AM_CONDITIONAL([HAVE_REDIRECT],[test x"$with_redirect" = x"yes"])
-	
+
+if test x"${with_ftimings}" = x"yes"; then
+  AC_DEFINE([HAVE_DETAILED_TIMINGS], [1], [Enable more timings])
+  AC_ARG_ENABLE([papi],
+	[AS_HELP_STRING([--disable-papi],[Do not use PAPI to also measure flop count, autodetected by default])],
+	[want_papi=$enableval],[want_papi="auto"])
+  papi_found=unknown
+  if test x"$want_papi" != x"no" ; then
+    AC_CHECK_LIB([papi],[PAPI_library_init],[papi_found="yes"],[papi_found="no"])
+    if test x"$want_papi" = x"yes" ; then
+      if test x"$papi_found" = x"no" ; then
+        AC_MSG_ERROR(["Could not find usable PAPI installation, please adjust CFLAGS, LDFLAGS"])
+      fi
+    fi
+  fi
+  if test x"$papi_found" = x"yes"; then
+    AC_DEFINE([HAVE_LIBPAPI], [1], [Use the PAPI library])
+    LIBS="-lpapi $LIBS"
+  fi
+fi
+AM_CONDITIONAL([HAVE_DETAILED_TIMINGS],[test x"$with_ftimings" = x"yes"])
+
 AC_MSG_CHECKING(whether SSE assembler kernel can be compiled)
 
 $CC -c $srcdir/src/elpa2_kernels/elpa2_kernels_asm_x86_64.s -o test.o 2>/dev/null

ELPA_2014.06/src/ftimings/COPYING.LESSER

+                   GNU LESSER GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+
+  This version of the GNU Lesser General Public License incorporates
+the terms and conditions of version 3 of the GNU General Public
+License, supplemented by the additional permissions listed below.
+
+  0. Additional Definitions.
+
+  As used herein, "this License" refers to version 3 of the GNU Lesser
+General Public License, and the "GNU GPL" refers to version 3 of the GNU
+General Public License.
+
+  "The Library" refers to a covered work governed by this License,
+other than an Application or a Combined Work as defined below.
+
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+choice, if you do both of the following:
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+   a) Accompany the combined library with a copy of the same work based
+   on the Library, uncombined with any other library facilities,
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+   b) Give prominent notice with the combined library that part of it
+   is a work based on the Library, and explaining where to find the
+   accompanying uncombined form of the same work.
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+  6. Revised Versions of the GNU Lesser General Public License.
+
+  The Free Software Foundation may publish revised and/or new versions
+of the GNU Lesser General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
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+Library as you received it specifies that a certain numbered version
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+conditions either of that published version or of any later version
+published by the Free Software Foundation. If the Library as you
+received it does not specify a version number of the GNU Lesser
+General Public License, you may choose any version of the GNU Lesser
+General Public License ever published by the Free Software Foundation.
+
+  If the Library as you received it specifies that a proxy can decide
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+apply, that proxy's public statement of acceptance of any version is
+permanent authorization for you to choose that version for the
+Library.

ELPA_2014.06/src/ftimings/ftimings_type.F90

+! Copyright 2014 Lorenz Hüdepohl
+!
+! This file is part of ftimings.
+!
+! ftimings is free software: you can redistribute it and/or modify
+! it under the terms of the GNU Lesser General Public License as published by
+! the Free Software Foundation, either version 3 of the License, or
+! (at your option) any later version.
+!
+! ftimings is distributed in the hope that it will be useful,
+! but WITHOUT ANY WARRANTY; without even the implied warranty of
+! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+! GNU Lesser General Public License for more details.
+!
+! You should have received a copy of the GNU Lesser General Public License
+! along with ftimings.  If not, see <http://www.gnu.org/licenses/>.
+
+module ftimings_type
+  use, intrinsic :: iso_c_binding, only : C_INT64_T, C_DOUBLE, C_LONG_LONG, C_LONG, C_INT
+  implicit none
+  integer, parameter :: rk = C_DOUBLE
+  integer, parameter :: name_length = 40
+end module

ELPA_2014.06/src/ftimings/ftimings_value.F90

+! Copyright 2014 Lorenz Hüdepohl
+!
+! This file is part of ftimings.
+!
+! ftimings is free software: you can redistribute it and/or modify
+! it under the terms of the GNU Lesser General Public License as published by
+! the Free Software Foundation, either version 3 of the License, or
+! (at your option) any later version.
+!
+! ftimings is distributed in the hope that it will be useful,
+! but WITHOUT ANY WARRANTY; without even the implied warranty of
+! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+! GNU Lesser General Public License for more details.
+!
+! You should have received a copy of the GNU Lesser General Public License
+! along with ftimings.  If not, see <http://www.gnu.org/licenses/>.
+
+#ifdef HAVE_CONFIG_H
+#include "config-f90.h"
+#endif
+
+module ftimings_value
+  use ftimings_type
+  implicit none
+  public
+
+  type value_t
+    integer(kind=C_INT64_T) :: micros = 0         ! microseconds spent in this node
+    integer(kind=C_LONG) :: virtualmem = 0        ! newly created virtual memory
+    integer(kind=C_LONG) :: maxrsssize = 0            ! newly used max. resident mem ("high water mark")
+
+    integer(kind=C_LONG) :: rsssize = 0           ! newly used resident memory
+
+    integer(kind=C_LONG_LONG) :: flop_count = 0   ! floating point operations done in this node
+    integer(kind=C_LONG_LONG) :: ldst = 0         ! number of loads and stores
+  end type
+
+  interface operator(+)
+    module procedure value_add
+  end interface
+
+  interface operator(-)
+    module procedure value_minus
+    module procedure value_inverse
+  end interface
+
+  type(value_t), parameter :: null_value = value_t(micros = 0, &
+                                                   rsssize = 0, &
+                                                   virtualmem = 0, &
+                                                   maxrsssize = 0, &
+                                                   flop_count = 0)
+
+  contains
+
+  pure elemental function value_add(a,b) result(c)
+    class(value_t), intent(in) :: a, b
+    type(value_t) :: c
+    c%micros = a%micros + b%micros
+    c%rsssize = a%rsssize + b%rsssize
+    c%virtualmem = a%virtualmem + b%virtualmem
+    c%maxrsssize = a%maxrsssize + b%maxrsssize
+#ifdef HAVE_LIBPAPI
+    c%flop_count = a%flop_count + b%flop_count
+    c%ldst = a%ldst + b%ldst
+#endif
+  end function
+
+  pure elemental function value_minus(a,b) result(c)
+    class(value_t), intent(in) :: a, b
+    type(value_t) :: c
+    c%micros = a%micros - b%micros
+    c%rsssize = a%rsssize - b%rsssize
+    c%virtualmem = a%virtualmem - b%virtualmem
+    c%maxrsssize = a%maxrsssize - b%maxrsssize
+#ifdef HAVE_LIBPAPI
+    c%flop_count = a%flop_count - b%flop_count
+    c%ldst = a%ldst - b%ldst
+#endif
+  end function
+
+  pure elemental function value_inverse(a) result(neg_a)
+    class(value_t), intent(in) :: a
+    type(value_t) :: neg_a
+    neg_a%micros = - a%micros
+    neg_a%rsssize = - a%rsssize
+    neg_a%virtualmem = - a%virtualmem
+    neg_a%maxrsssize = - a%maxrsssize
+#ifdef HAVE_LIBPAPI
+    neg_a%flop_count = - a%flop_count
+    neg_a%ldst = - a%ldst
+#endif
+  end function
+end module

ELPA_2014.06/src/ftimings/highwater_mark.c

+/* Copyright 2014 Andreas Marek, Lorenz Hüdepohl
+ *
+ * This file is part of ftimings.
+ *
+ * ftimings is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * ftimings is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with ftimings.  If not, see <http://www.gnu.org/licenses/>.
+ */
+#include <sys/types.h>
+#define _GNU_SOURCE
+#include <stdio.h>
+#include <unistd.h>
+#include <stdlib.h>
+#include <string.h>
+
+long ftimings_highwater_mark() {
+	long hwm = 0L;
+	char line[1024];
+	FILE* fp = NULL;
+
+	if ((fp = fopen( "/proc/self/status", "r" )) == NULL ) {
+		return 0L;
+	}
+
+	/* Read memory size data from /proc/pid/status */
+	while(fgets(line, sizeof line, fp)) {
+		if (sscanf(line, "VmHWM: %ld kB", &hwm) == 1) {
+			break;
+		}
+	}
+	fclose(fp);
+
+	return hwm * 1024L;
+}

ELPA_2014.06/src/ftimings/papi.c

+/* Copyright 2014 Lorenz Hüdepohl
+ *
+ * This file is part of ftimings.
+ *
+ * ftimings is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * ftimings is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with ftimings.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <stdio.h>
+#include <stdlib.h>
+
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
+static int event_set;
+
+static int tried_papi_init = 0;
+static int papi_available = 0;
+static int flops_available = 0;
+static int ldst_available = 0;
+
+#ifdef HAVE_LIBPAPI
+#include <papi.h>
+
+int ftimings_papi_init(void) {
+	int ret;
+
+	if (tried_papi_init) {
+		return papi_available;
+	}
+
+#pragma omp critical
+	{
+		/* Think about it :) */
+		if (tried_papi_init) {
+			goto end;
+		}
+
+		tried_papi_init = 1;
+
+		event_set = PAPI_NULL;
+
+		if ((ret = PAPI_library_init(PAPI_VER_CURRENT)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d: PAPI_library_init(%d): %s\n",
+					__FILE__, __LINE__, PAPI_VER_CURRENT, PAPI_strerror(ret));
+			goto error;
+		}
+
+		if ((ret = PAPI_create_eventset(&event_set)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d PAPI_create_eventset(): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			goto error;
+		}
+
+		/* Check FLOP counter availability */
+		if ((ret = PAPI_query_event(PAPI_DP_OPS)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d: PAPI_query_event(PAPI_DP_OPS): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			flops_available = 0;
+		} else if ((ret = PAPI_add_event(event_set, PAPI_DP_OPS)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d PAPI_add_event(): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			flops_available = 0;
+		} else {
+			flops_available = 1;
+		}
+
+		/* Loads + Stores */
+		if ((ret = PAPI_query_event(PAPI_LD_INS)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d: PAPI_query_event(PAPI_LD_INS): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			ldst_available = 0;
+		} else if ((ret = PAPI_query_event(PAPI_SR_INS)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d: PAPI_query_event(PAPI_SR_INS): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			ldst_available = 0;
+		} else if ((ret = PAPI_add_event(event_set, PAPI_LD_INS)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d PAPI_add_event(event_set, PAPI_LD_INS): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			ldst_available = 0;
+		} else if ((ret = PAPI_add_event(event_set, PAPI_SR_INS)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d PAPI_add_event(event_set, PAPI_SR_INS): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			ldst_available = 0;
+		} else {
+			ldst_available = 1;
+		}
+
+		/* Start */
+		if ((ret = PAPI_start(event_set)) < 0) {
+			fprintf(stderr, "ftimings: %s:%d PAPI_start(): %s\n",
+					__FILE__, __LINE__, PAPI_strerror(ret));
+			goto error;
+		}
+
+		goto end;
+
+error:
+		/* PAPI works */
+		papi_available = 0;
+
+end:
+		/* PAPI works */
+		papi_available = 1;
+
+	} /* End of critical region */
+
+	return papi_available;
+}
+
+int ftimings_flop_init(void) {
+	int ret;
+
+	if (!tried_papi_init) {
+		ftimings_papi_init();
+	}
+
+	return flops_available;
+}
+
+int ftimings_loads_stores_init(void) {
+	int ret;
+
+	if (!tried_papi_init) {
+		ftimings_papi_init();
+	}
+
+	return ldst_available;
+}
+
+void ftimings_papi_counters(long long *flops, long long *ldst) {
+	long long res[3];
+	int i, ret;
+
+	if ((ret = PAPI_read(event_set, &res[0])) < 0) {
+		fprintf(stderr, "PAPI_read: %s\n", PAPI_strerror(ret));
+		exit(1);
+	}
+
+	i = 0;
+	if (flops_available) {
+		*flops = res[i++];
+	} else {
+		*flops = 0LL;
+	}
+	if (ldst_available) {
+		*ldst = res[i++];
+		*ldst += res[i++];
+	} else {
+		*ldst = 0LL;
+	}
+}
+#endif

ELPA_2014.06/src/ftimings/resident_set_size.c

+/* Copyright 2014 Lorenz Hüdepohl
+ *
+ * This file is part of ftimings.
+ *
+ * ftimings is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * ftimings is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with ftimings.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <stdio.h>
+#include <unistd.h>
+
+long ftimings_resident_set_size() {
+	long rss = 0L;
+	FILE* fp = NULL;
+	if ((fp = fopen( "/proc/self/statm", "r" )) == NULL ) {
+		return 0L;
+	}
+	if (fscanf(fp, "%*s%ld", &rss) != 1) {
+		fclose(fp);
+		return (size_t)0L;	  /* Can't read? */
+	}
+	fclose(fp);
+	return rss * sysconf( _SC_PAGESIZE);
+}

ELPA_2014.06/src/ftimings/time.c

+/* Copyright 2014 Lorenz Hüdepohl
+ *
+ * This file is part of ftimings.
+ *
+ * ftimings is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * ftimings is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with ftimings.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <sys/time.h>
+#include <stdio.h>
+#include <unistd.h>
+#include <stdint.h>
+#include <stddef.h>
+#include <stdlib.h>
+
+#ifdef HAVE_CONFIG_H
+#include "config-f90.h"
+#endif
+
+/* Return number of microseconds since 1.1.1970, in a 64 bit integer.
+ * (with 2^64 us ~ 6 * 10^5 years, this should be sufficiently overflow safe)
+ */
+int64_t ftimings_microseconds_since_epoch(void) {
+	struct timeval tv;
+	if (gettimeofday(&tv, NULL) != 0) {
+		perror("gettimeofday");
+		exit(1);
+	}
+	return (int64_t) (tv.tv_sec) * ((int64_t) 1000000) + (int64_t)(tv.tv_usec);
+}

ELPA_2014.06/src/ftimings/virtual_memory.c

+/* Copyright 2014 Andreas Marek, Lorenz Hüdepohl
+ *
+ * This file is part of ftimings.
+ *
+ * ftimings is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * ftimings is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the