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Commit 31a03aa2 authored by Andreas Marek's avatar Andreas Marek
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Add migration notice

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*.o
*.lo
*.deps
*.dirstamp
*.libs
*.fortran_dependencies
modules/
Makefile.in
aclocal.m4
ar-lib
autom4te.cache
compile
config.guess
config.h.in
config.sub
configure
depcomp
install-sh
ltmain.sh
missing
test-driver
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jobs:
script: ./autogen.sh && ./configure && make && make check TEST_FLAGS='1500 50 16'
COPYING/COPYING deleted 100644 → 0
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Licensing and copyright terms for the ELPA library:
ELPA Consortium (2011)
****
Copyright of the original code rests with the authors inside the ELPA
consortium. The copyright of any additional modifications shall rest
with their original authors, but shall adhere to the licensing terms
set forth below.
****
The code is distributed under the terms of the GNU Lesser General Public
License version 3 (LGPL). The full text can be found in the file "lgpl.txt"
in this repository. "lgpl.txt" makes reference to the GPL v3, which can also
be found in this repository ("gpl.txt").
****
ELPA reflects a substantial effort on the part of the original
ELPA consortium, and we ask you to respect the spirit of the
license that we chose: i.e., please contribute any changes you
may have back to the original ELPA library distribution, and keep
any derivatives of ELPA under the same license that we chose for
the original distribution, the GNU Lesser General Public License.
When in doubt, talk to us. What we would like to ensure is that the ELPA
code can be used as needed, while providing a strong incentive for
others to contribute their modifications back to the original development.
****
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COPYING/lgpl.txt deleted 100644 → 0
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GNU LESSER GENERAL PUBLIC LICENSE
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Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
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INSTALL deleted 100644 → 0
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How to install ELPA
===================
First of all, if you do not want to build ELPA yourself, and you run Linux,
it is worth having a look at the ELPA webpage http://elpa.rzg.mpg.de
and/or the repositories of your Linux distribution: there exist
pre-build packages for a number of Linux distributions like Fedora,
Debian, and OpenSuse. More, will hopefully follow in the future.
If you want to build (or have to since no packages are available) ELPA yourself,
please note that ELPA is shipped with a typical "configure" and "make"
autotools procedure. This is the only supported way how to build and install ELPA.
If you obtained ELPA from the official git repository, you will not find
the needed configure script! Please look at the "INSTALL_FROM_GIT_VERSION" file
for the documentation how to proceed.
If --- against our recommendations --- you do not want to install ELPA as
library, or you do not want to use the autotools you will have to find a solution
by yourself. This approach is NOT supported by us in any way and we strongly discourage
this approach.
If you do this, because you want to include ELPA within your code project (i.e. use
ELPA not as an external library but "assimilate" it in your projects ),
please distribute then _ALL_ files (as obtained from an official release tar-ball)
of ELPA with your code. Note, however, that including the ELPA source files in your
code projects (and not using ELPA as external library) is only allowed under the terms of
the LGPL license if your code is ALSO under LGPL.
(A): Installing ELPA as library with configure
===================================================
The configure installation is best done in four steps
1) run configure:
Check the available options with "configure --help".
ELPA is shipped with several different versions of the
elpa2-kernel, each is optimized and tuned for a different
architecture.
1.1) Choice of MPI compiler (wrappers)
It is mandatory that the C and C++ parts are compiled with the
GNU C, C++ compilers. Thus, all ELPA test programs which are written
in C must be compiled and linked with the MPI compiler (wrapper) which uses
the GNU C compilers.
The Fortran parts of ELPA can be compiled with any Fortran compiler of
your choice. It is for example quite common to compile the Fortran part
with the Intel Fortran compiler but the C,C++ parts must be compiled with
the GNU compilers.
Thus special care has to be taken that the correct MPI compiler (wrappers)
are found by the autotools! The configure script tries to find the correct
wrappers automatically, but sometimes it will fail.
In these cases it is necessary to set these compilers by hand:
../configure FC=fortran_compiler_wrapper_of_your_choice CC=gnu_compiler_wrapper
will tell autotools which wrappers to take.
1.2) Choice of ELPA2 kernels
With the release of ELPA (2014.06 or newer) it is _not_
mandatory any more to define the (real and complex) kernels
at build time. The configure procedure will build all the
kernels which can be used on the build system. The choice of
the kernels is now a run-time option. This is the most
convenient and also recommended way. It is intended to augment
this with an auto-tuning feature.
Nevertheless, one can still define at build-time _one_
specific kernel (for the real and the complex case each).
Then, ELPA is configured only with this real (and complex)
kernel, and all run-time checking is disabled. Have a look
at the "configure --help" messages and please refer to the
file "./src/elpa2_kernels/README_elpa2_kernels.txt".
1.3) Setting up Blacs/Scalapack
The configure script tries to auto-detect an installed Blacs/Scalapack
library. If this is successful, you do not have to specify anything
in this regard. However, this will fail, if you do not use Netlib
Blacs/Scalapack but vendor specific implementations (e.g. Intel's MKL
library or the implementation of Cray and so forth...).
In this case, please point to your Blacs/Scalapack installation and the
link-line with the variables "SCALAPACK_LDFLAGS" and "SCALAPACK_FCFLAGS".
"SCALAPACK_LDFLAGS" should contain the correct link-line for your
Blacs/Scalapack installation and "SCALAPACK_FCFLAGS" the include path
and any other flags you need at compile time.
For example with Intel's MKL 11.2 library one might have to set
SCALAPACK_LDFLAGS="-L$MKLROOT/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 \
-lmkl_sequential -lmkl_core -lmkl_blacs_intelmpi_lp64 \
-lpthread -lm -Wl,-rpath,$MKL_HOME/lib/intel64"
and
SCALAPACK_FCFLAGS="-I$MKLROOT/include/intel64/lp64"
Note, that the actual MKL linkline depends on the installed MKL version.
If your libraries are in non-standard locations, you can think about
specifying a runtime library search path ("rpath") in the link-line,
otherwise it will be necessary to update the LD_LIBRARY_PATH environment
variable.
In any case, auto-detection or manual specification of Blacs/Scalapack,
the configure procedure will check whether Blacs/Scalapack is available
at build-time and try to link with it.
1.4) Setting optimizations
Please set the optimisation that you prefer with the
variable "FCFLAGS", "CFLAGS", and "CXXFLAGS",
please see "./src/elpa2_kernels/README_elpa2_kernels.txt".
Note that _NO_ compiler optimization flags are set automatically. It
is always adviced to set them by e.g.:
./configure CFLAGS="-O2" CXXFLAGS="-O2" FCFLAGS="-O2"
Note that it is mandatory to set optimization flags for C, C++, and Fortran
since ELPA uses source files and compile steps from all these languages.
Also note that building of the SSE and AVX kernels, requires
compilation with the GNU C Compiler (gcc). It is advised to
set also CFLAGS="-march=native" CXXFLAGS="-march=native",
since otherwise the GNU compiler does not support AVX, even
if the hardware does. If you already included "-mAVX" in the
flags, you can skip "-march=native".
If you want to use the newer AVX2 instructions, assuming they are supported on
your hardware, please set CFLAGS="-march=avx2 -mfma" and CXXFLAGS="-march=avx2 -mfma".
Setting the optimization flags for the AVX kernels can be a hassle. If AVX
kernels are build for your system, you can set the configure option
"--with-avx-optimizations=yes". This will automatically set a few compiler
optimization flags which turned out to be beneficial for AVX support.
However, it might be that on your system/compiler version etc. other flags
are the better choice. AND this does _not_ set the above mentioned flags,
which you should still set by hand:
./configure CFLAGS="-O2" CXXFLAGS="-O2" FCFLAGS="-O2"
An istallation with AVX2 and best-optimizations could thus look like this:
./configure CFLAGS="-O2 -mavx2 -mfma" CXXFLAGS="-O2 -mavx2 -mfma" FCFLAGS="-O2" --with-avx-optimization
1.5) Installation location
Set the "--prefix" flag if you wish another installation location than
the default "/usr/local/".
1.6) Hybrid OpenMP support
If you want to use the hybrid MPI/OpenMP version of ELPA please specify
"--enable-openmp". Note that the ELPA library will then contain a "_mt" in
it's name to indicate multi threading support.
1.7) Other
Note, that at the moment we do not officially support "cross compilation"
although it should work.
2) run "make"
3) run "make check"
A simple test of ELPA is done. At the moment the usage of "mpiexec"
is required. If this is not possible at your system, you can run the
binaries
elpa1_test_real
elpa2_test_real
elpa1_test_complex
elpa2_test_complex
elpa2_test_complex_default_kernel
elpa2_test_complex_choose_kernel_with_api
elpa2_test_real_default_kernel
elpa2_test_real_choose_kernel_with_api
yourself. At the moment the tests check whether the residual and the
orthogonality of the found eigenvectors are lower than a threshold of
5e-12. If this test fails, or if you believe the threshold should be
even lower, please talk to us. Furthermore, your run-time choice of
ELPA kernels is tested. This is intended as a help to get used to this
new feature. With the same thought in mind, a binary "elpa2_print_kernels"
is provided, which is rather self-explanatory.
Also some of the above mentioned tests are provided as C source files.
These should demonstrate, how to call ELPA from a C program (i.e. which headers to include
and call the ELPA functions). They are NOT intended as a copy and paste solution!
4) run "make install"
Note that a pkg-config file for ELPA is produced. You should then be
able to link the ELPA library to your own applications.
B) Installing ELPA without the autotools procedure
===================================================
We do not support installation without the autotools anymore!
If you think you need this, sorry, but then you are on your own.
How to use ELPA
===============
Using ELPA should be quite simple. It is similar to ScalaPack but the API
is different. See the examples in the directory "./test". There it is shown how
to evoke ELPA from a Fortran code.
If you installed ELPA, a pkg-config file is produced which will tell you how to
link your own program with ELPA.
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Welcome to the git-based distribution of the ELPA eigensolver library.
If you are reading this file, you have obtained the ELPA library
through the git repository that hosts the source code and also allows
you to contribute improvements to the project if necessary.
The git version does not contain the necessary build script:
configure, Makefile ...
If you use the git version, you are most likely actively developing
features/improvements for ELPA, and a rebuild of the autotools scripts
will be necessary anyway.
Thus please run "autogen.sh" after your changes, in order to build the
autotoos scripts. Note that autoconf version >= 2.69 is needed for
ELPA.
After this step, please proceed as written in the "INSTALL" file.
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Libtool interface number history (the "c" in [c:r:a] of
https://www.gnu.org/software/libtool/manual/html_node/Updating-version-info.html).
- 0
Legacy interface number for all releases prior to 2014.06
- 1
Incompatible API change. Most subroutines were converted into functions
returning a success flag. Previously, the library called exit() on error
conditions.
The state of release 2014.06.001 defines this interface
- 2
Incompatible API change. The routine for ELPA 2 real case takes an
optional argument, defining whether QR decomposition is used or not
The state of release 2015.02.001 defines this interface
- 3
Incompatible API change. C Functions are added to provide an C interface.
The subroutine "get_elpa_row_col_comms" has been converted to a function
which returns an error code.
The state of release 2015.02.002 defines this interface
- 4
Incompatible API change. The Fortran versions of the library functions return
a logical indicating success or failure. The C versions of the library functions
return an integer {0,1} for success and failure.
Some interface need an extra argument, specifying the number of matrix columns
(see the documentation)
Makefile.am deleted 100644 → 0
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## Process this file with automake to produce Makefile.in
ACLOCAL_AMFLAGS = ${ACLOCAL_FLAGS} -I m4
AM_FCFLAGS = $(SCALAPACK_FCFLAGS) @FC_MODINC@modules @FC_MODOUT@modules
AM_LDFLAGS = $(SCALAPACK_LDFLAGS)
# libelpa
lib_LTLIBRARIES = libelpa@SUFFIX@.la
libelpa@SUFFIX@_la_LINK = $(FCLINK) $(AM_LDFLAGS) -version-info $(ELPA_SO_VERSION) -lstdc++
libelpa@SUFFIX@_la_SOURCES = src/mod_precision.f90 \
src/elpa_utilities.F90 \
src/elpa1_compute.F90 \
src/elpa1.F90 \
src/elpa2_utilities.F90 \
src/mod_pack_unpack_real.F90 \
src/elpa2_kernels/mod_single_hh_trafo_real.F90 \
src/mod_compute_hh_trafo_real.F90 \
src/mod_compute_hh_trafo_complex.F90 \
src/mod_pack_unpack_complex.F90 \
src/elpa2_compute.F90 \
src/elpa2.F90 \
src/elpa_c_interface.F90 \
src/elpa_qr/qr_utils.f90 \
src/elpa_qr/elpa_qrkernels.f90 \
src/elpa_qr/elpa_pdlarfb.f90 \
src/elpa_qr/elpa_pdgeqrf.F90
if HAVE_DETAILED_TIMINGS
libelpa@SUFFIX@_la_SOURCES += src/timer.F90 \
src/ftimings/ftimings.F90 \
src/ftimings/ftimings_type.F90 \
src/ftimings/ftimings_value.F90 \
src/ftimings/highwater_mark.c \
src/ftimings/resident_set_size.c \
src/ftimings/time.c \
src/ftimings/virtual_memory.c \
src/ftimings/papi.c
endif
if WITH_REAL_GENERIC_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real.F90
endif
if WITH_COMPLEX_GENERIC_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_complex.F90
endif
if WITH_REAL_GENERIC_SIMPLE_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_simple.F90
endif
if WITH_COMPLEX_GENERIC_SIMPLE_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_complex_simple.F90
endif
if WITH_REAL_BGP_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_bgp.f90
endif
if WITH_REAL_BGQ_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_bgq.f90
endif
if WITH_REAL_SSE_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_asm_x86_64.s
else
if WITH_COMPLEX_SSE_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_asm_x86_64.s
endif
endif
if WITH_REAL_AVX_BLOCK2_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_sse-avx_2hv.c
endif
if WITH_REAL_AVX_BLOCK4_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_sse-avx_4hv.c
endif
if WITH_REAL_AVX_BLOCK6_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_sse-avx_6hv.c
endif
if WITH_COMPLEX_AVX_BLOCK1_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_complex_sse-avx_1hv.cpp
endif
if WITH_COMPLEX_AVX_BLOCK2_KERNEL
libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_complex_sse-avx_2hv.cpp
endif
#if WITH_AVX_SANDYBRIDGE
# libelpa@SUFFIX@_la_SOURCES += src/elpa2_kernels/elpa2_kernels_real_sse-avx_2hv.c \
# src/elpa2_kernels/elpa2_kernels_complex_sse-avx_1hv.cpp
#endif
# install any .mod files in the include/ dir
elpa_includedir = $(includedir)/elpa@SUFFIX@-@PACKAGE_VERSION@
nobase_elpa_include_HEADERS = $(wildcard modules/*)
nobase_elpa_include_HEADERS += elpa/elpa.h elpa/elpa_kernel_constants.h elpa/elpa_generated.h
man_MANS = man/solve_evp_real.3 \
man/solve_evp_real_1stage.3 \
man/solve_evp_complex.3 \
man/solve_evp_complex_1stage.3 \
man/solve_evp_real_2stage.3 \
man/solve_evp_complex_2stage.3 \
man/get_elpa_row_col_comms.3 \
man/get_elpa_communicators.3 \
man/print_available_elpa2_kernels.1
# other files to distribute
filesdir = $(docdir)/examples
dist_files_DATA = \
test/fortran_test_programs/read_real.F90 \
test/fortran_test_programs/test_complex2.F90 \
test/fortran_test_programs/test_complex2_default_kernel.F90 \
test/fortran_test_programs/test_complex2_choose_kernel_with_api.F90 \
test/fortran_test_programs/test_complex.F90 \
test/fortran_test_programs/test_real2.F90 \
test/fortran_test_programs/test_real2_default_kernel.F90 \
test/fortran_test_programs/test_real2_default_kernel_qr_decomposition.F90 \
test/fortran_test_programs/test_real2_choose_kernel_with_api.F90 \
test/fortran_test_programs/test_real.F90 \
test/fortran_test_programs/test_real_with_c.F90 \
src/print_available_elpa2_kernels.F90
dist_doc_DATA = README COPYING/COPYING COPYING/gpl.txt COPYING/lgpl.txt
# pkg-config stuff
pkgconfigdir = $(libdir)/pkgconfig
pkgconfig_DATA = @PKG_CONFIG_FILE@
# programs
bin_PROGRAMS = \
elpa1_test_real@SUFFIX@ \
elpa1_test_complex@SUFFIX@ \
elpa2_test_real@SUFFIX@ \
elpa2_test_complex@SUFFIX@ \
elpa2_print_kernels@SUFFIX@
noinst_PROGRAMS = \
elpa2_test_real_default_kernel@SUFFIX@ \
elpa2_test_real_default_kernel_qr_decomposition@SUFFIX@ \
elpa2_test_complex_default_kernel@SUFFIX@ \
elpa2_test_real_choose_kernel_with_api@SUFFIX@ \
elpa2_test_complex_choose_kernel_with_api@SUFFIX@ \