From 9ca5deea75cf85daf26ae6fde9edde7854679f5b Mon Sep 17 00:00:00 2001
From: Robert Forkel <xrotwang@googlemail.com>
Date: Tue, 14 Mar 2023 10:56:20 +0100
Subject: [PATCH] release 1.9.0
---
CHANGELOG.md | 2 +-
README.md | 25 +++++++++++++++++--------
setup.cfg | 3 ++-
src/newick.py | 2 +-
4 files changed, 21 insertions(+), 11 deletions(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 98143f1..9308304 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,7 +2,7 @@
The `newick` package adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
-## [Unreleased]
+## [v1.9.0] - 2023-03-14
Support round-tripping Newick with two annotations per node, one before and one after the
length separator.
diff --git a/README.md b/README.md
index 30e6bb5..26cbf69 100644
--- a/README.md
+++ b/README.md
@@ -128,14 +128,23 @@ can be accessed from the `dict` `Node.properties`:
{'k1': 'v1', 'k2': 'v2'}
```
-Note that we still don't support **typed** node properties. I.e. values in `Node.properties` are
-always strings. Since typed properties tend to be specific to the application writing the newick,
-this level of support would require more knowledge of the creation context of the tree than can
-safely be inferred from the Newick string alone.
-```python
->>> newick.loads('(A,B)C[&range={1,5},support="100"];')[0].properties
-{'range': '{1,5}', 'support': '"100"'}
-```
+**Limitations:**
+
+- **Typed** node properties are not supported. I.e. values in `Node.properties` are
+ always strings. Since typed properties tend to be specific to the application writing the newick,
+ this level of support would require more knowledge of the creation context of the tree than can
+ safely be inferred from the Newick string alone.
+ ```python
+ >>> newick.loads('(A,B)C[&range={1,5},support="100"];')[0].properties
+ {'range': '{1,5}', 'support': '"100"'}
+ ```
+- Node annotations in comments are not completely round-trip-safe. In particular multiple comments
+ per node may be lumped together (using `|` as separator) when serializing a Newick node:
+ ```python
+ >>> newick.loads('(a,b)c[c1][c2]:3')[0].newick
+ '(a,b)c[c1|c2]:3'
+ ```
+
## Writing Newick
diff --git a/setup.cfg b/setup.cfg
index 62a8376..acb026b 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,7 @@
[metadata]
name = newick
-version = 1.8.2.dev0
+version = 1.9.0
+
author = Robert Forkel
author_email = robert_forkel@eva.mpg.de
description = A python module to read and write the Newick format
diff --git a/src/newick.py b/src/newick.py
index cfe4f1c..cf01b6e 100644
--- a/src/newick.py
+++ b/src/newick.py
@@ -10,7 +10,7 @@ import pathlib
import itertools
import dataclasses
-__version__ = "1.8.2.dev0"
+__version__ = "1.9.0"
QUOTE = "'"
ESCAPE = {"'", "\\"}
--
GitLab