From 9266c1b3abc538a05297eba3ef95bda3c5f71de8 Mon Sep 17 00:00:00 2001
From: Cristian C Lalescu <Cristian.Lalescu@ds.mpg.de>
Date: Fri, 15 Mar 2019 14:03:12 +0100
Subject: [PATCH] update host_info installation
---
CMakeLists.txt | 5 +++
CMakeLists_packages.txt | 71 -----------------------------------------
bfps/DNS.py | 6 ----
bfps/PP.py | 6 ----
bfps/TEST.py | 6 ----
bfps/_code.py | 12 +++----
setup.py | 32 +------------------
7 files changed, 10 insertions(+), 128 deletions(-)
delete mode 100644 CMakeLists_packages.txt
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 86385736..2011f0e8 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -273,6 +273,11 @@ install(EXPORT BFPS_EXPORT DESTINATION lib/)
#####################################################################################
## Install the python wrapper
# copy command
+if(EXISTS "${PROJECT_SOURCE_DIR}/host_info.py")
+ install(CODE "execute_process(COMMAND ${CMAKE_COMMAND} -E copy ${PROJECT_SOURCE_DIR}/host_info.py ${PROJECT_BINARY_DIR}/python/bfps/)")
+else()
+ install(CODE "execute_process(COMMAND ${CMAKE_COMMAND} -E copy ${PROJECT_SOURCE_DIR}/pc_host_info.py ${PROJECT_BINARY_DIR}/python/bfps/host_info.py)")
+endif()
install(CODE "execute_process(COMMAND ${CMAKE_COMMAND} -E copy_directory ${PROJECT_SOURCE_DIR}/bfps ${PROJECT_BINARY_DIR}/python/bfps/)")
install(CODE "execute_process(COMMAND python ${PROJECT_SOURCE_DIR}/setup.py install --force --prefix=${CMAKE_INSTALL_PREFIX} WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/python/)")
diff --git a/CMakeLists_packages.txt b/CMakeLists_packages.txt
deleted file mode 100644
index 17a1099c..00000000
--- a/CMakeLists_packages.txt
+++ /dev/null
@@ -1,71 +0,0 @@
-# vim: syntax=cmake
-
-#cmake_policy(SET CMP0074 NEW)
-
-set(MPI_STATIC ON)
-find_package(MPI REQUIRED)
-
-set(HDF5_STATIC ON)
-find_package(HDF5 REQUIRED)
-
-###############################################################################
-# ugly manual setting for HDF5
-if(NOT DEFINED HDF5_INCLUDE_PATH)
- set(HDF5_INCLUDE_PATH "$ENV{HDF5_ROOT}/include")
-endif()
-###############################################################################
-
-###############################################################################
-# ugly manual settings for FFTW.
-set(FFTW_STATIC ON)
-if (NOT DEFINED ENV{FFTW_BASE})
- message(FATAL_ERROR "Required FFTW_BASE environment variable is not defined.")
-endif()
-set(FFTW_INCLUDE_FLAGS
- "$ENV{FFTW_BASE}/include"
- )
-if (NOT DEFINED ENV{FFTW_LIB})
- message(FATAL_ERROR "Required FFTW_LIB environment variable is not defined.")
-endif()
-if (NOT DEFINED ENV{FFTW_OPENMP_LIB})
- message(FATAL_ERROR "Required FFTW_OPENMP_LIB environment variable is not defined.")
-endif()
-set(FFTW_LINK_FLAGS
- "$ENV{FFTW_OPENMP_LIB} $ENV{FFTW_LIB}"
- )
-###############################################################################
-
-###############################################################################
-# ugly manual settings for SZIP.
-# needed for non-gcc environments.
-if(DEFINED env{SZIP_LIB})
- set(SZIP_LINK_FLAGS
- "$env{SZIP_LIB} -lz")
-else()
- set(SZIP_LINK_FLAGS
- "")
-endif()
-###############################################################################
-
-include_directories(
- ${MPI_INCLUDE_PATH}
- ${HDF5_INCLUDE_PATH}
- ${FFTW_INCLUDE_PATH}
- )
-
-set(CMAKE_CXX_COMPILE_FLAGS
- ${CMAKE_CXX_COMPILE_FLAGS}
- "-Wall -std=c++11 -fopenmp"
- )
-set(CMAKE_CXX_COMPILE_FLAGS
- ${CMAKE_CXX_COMPILE_FLAGS}
- ${HDF5_COMPILE_FLAGS}
- ${MPI_COMPILE_FLAGS}
- )
-set(CMAKE_CXX_LINK_FLAGS
- ${MPI_LINK_FLAGS}
- ${HDF5_LINK_FLAGS}
- ${FFTW_LINK_FLAGS}
- ${CMAKE_CXX_LINK_FLAGS}
- )
-
diff --git a/bfps/DNS.py b/bfps/DNS.py
index e0d83caf..4388a292 100644
--- a/bfps/DNS.py
+++ b/bfps/DNS.py
@@ -50,12 +50,6 @@ class DNS(_code):
self,
work_dir = work_dir,
simname = simname)
- self.host_info = {'type' : 'cluster',
- 'environment' : None,
- 'deltanprocs' : 1,
- 'queue' : '',
- 'mail_address': '',
- 'mail_events' : None}
self.generate_default_parameters()
self.statistics = {}
return None
diff --git a/bfps/PP.py b/bfps/PP.py
index 77bf9d6c..4a8cff4b 100644
--- a/bfps/PP.py
+++ b/bfps/PP.py
@@ -51,12 +51,6 @@ class PP(_code):
self,
work_dir = work_dir,
simname = simname)
- self.host_info = {'type' : 'cluster',
- 'environment' : None,
- 'deltanprocs' : 1,
- 'queue' : '',
- 'mail_address': '',
- 'mail_events' : None}
self.generate_default_parameters()
return None
def set_precision(
diff --git a/bfps/TEST.py b/bfps/TEST.py
index 66b2b4aa..80adf39f 100644
--- a/bfps/TEST.py
+++ b/bfps/TEST.py
@@ -51,12 +51,6 @@ class TEST(_code):
self,
work_dir = work_dir,
simname = simname)
- self.host_info = {'type' : 'cluster',
- 'environment' : None,
- 'deltanprocs' : 1,
- 'queue' : '',
- 'mail_address': '',
- 'mail_events' : None}
self.generate_default_parameters()
return None
def set_precision(
diff --git a/bfps/_code.py b/bfps/_code.py
index f06e7198..ee196fe7 100644
--- a/bfps/_code.py
+++ b/bfps/_code.py
@@ -1,7 +1,7 @@
#######################################################################
# #
-# Copyright 2015 Max Planck Institute #
-# for Dynamics and Self-Organization #
+# Copyright 2015-2019 Max Planck Institute #
+# for Dynamics and Self-Organization #
# #
# This file is part of bfps. #
# #
@@ -35,6 +35,7 @@ import math
import warnings
import bfps
+from bfps.host_info import host_info
from ._base import _base
class _code(_base):
@@ -174,12 +175,7 @@ class _code(_base):
}
//endcpp
"""
- self.host_info = {'type' : 'cluster',
- 'environment' : None,
- 'deltanprocs' : 1,
- 'queue' : '',
- 'mail_address': '',
- 'mail_events' : None}
+ self.host_info = host_info
self.main = ''
return None
def write_src(self):
diff --git a/setup.py b/setup.py
index 925f6521..c9a8b70b 100644
--- a/setup.py
+++ b/setup.py
@@ -34,37 +34,12 @@ import sys
import subprocess
import pickle
-
-### compiler configuration
-# check if .config/bfps/machine_settings.py file exists, create it if not
-homefolder = os.path.expanduser('~')
-bfpsfolder = os.path.join(homefolder, '.config', 'bfps')
-if not os.path.exists(os.path.join(bfpsfolder, 'machine_settings.py')):
- if not os.path.isdir(bfpsfolder):
- os.mkdir(bfpsfolder)
- shutil.copyfile('./machine_settings_py.py', os.path.join(bfpsfolder, 'machine_settings.py'))
-# check if .config/bfps/host_information.py file exists, create it if not
-if not os.path.exists(os.path.join(bfpsfolder, 'host_information.py')):
- if not os.path.isdir(bfpsfolder):
- os.mkdir(bfpsfolder)
- open(os.path.join(bfpsfolder, 'host_information.py'),
- 'w').write('host_info = {\'type\' : \'none\'}\n')
- shutil.copyfile('./machine_settings_py.py', os.path.join(bfpsfolder, 'machine_settings.py'))
-sys.path.insert(0, bfpsfolder)
-# import stuff required for compilation of static library
-from machine_settings import compiler, include_dirs, library_dirs, extra_compile_args, extra_libraries
-
-
### package versioning
import get_version
VERSION = get_version.main()
print('This is bfps version ' + VERSION)
-### libraries
-libraries = extra_libraries
-
-
import distutils.cmd
class CompileLibCommand(distutils.cmd.Command):
@@ -90,12 +65,7 @@ class CompileLibCommand(distutils.cmd.Command):
def run(self):
### save compiling information
pickle.dump(
- {'include_dirs' : include_dirs,
- 'library_dirs' : library_dirs,
- 'compiler' : compiler,
- 'extra_compile_args' : eca,
- 'libraries' : libraries,
- 'install_date' : now,
+ {'install_date' : now,
'VERSION' : VERSION,
'git_revision' : git_revision},
open('bfps/install_info.pickle', 'wb'),
--
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