diff --git a/bfps/_code.py b/bfps/_code.py index 473e2a0483762686edfa347b5df00ee37d22b747..78302109148844761eb849a3a4cbf1fcdf71f8c5 100644 --- a/bfps/_code.py +++ b/bfps/_code.py @@ -223,7 +223,7 @@ class _code(_base): self.write_src() print('compiling code with command\n' + ' '.join(command_strings)) - return subprocess.call(command_strings) + return subprocess.check_call(command_strings) def set_host_info( self, host_info = {}): @@ -282,7 +282,7 @@ class _code(_base): qsub_atoms = ['qsub'] if len(job_name_list) >= 1: qsub_atoms += ['-hold_jid', job_name_list[-1]] - subprocess.call(qsub_atoms + [qsub_script_name]) + subprocess.check_call(qsub_atoms + [qsub_script_name]) os.chdir(current_dir) job_name_list.append(suffix) if self.host_info['type'] == 'SLURM': @@ -342,7 +342,7 @@ class _code(_base): submit_atoms = ['llsubmit'] if not no_submit: - subprocess.call(submit_atoms + [os.path.join(self.work_dir, job_script_name)]) + subprocess.check_call(submit_atoms + [os.path.join(self.work_dir, job_script_name)]) elif self.host_info['type'] == 'pc': os.chdir(self.work_dir) @@ -352,7 +352,7 @@ class _code(_base): for j in range(njobs): suffix = self.simname + '_{0}'.format(iter0 + j*self.parameters['niter_todo']) print('running code with command\n' + ' '.join(command_atoms)) - subprocess.call(command_atoms, + subprocess.check_call(command_atoms, stdout = open(out_file + '_' + suffix, 'w'), stderr = open(err_file + '_' + suffix, 'w')) os.chdir(current_dir)