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### Model file
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The name of the file containing the model has to be provided in the commandline when bioEM is executed using the keyword
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- --Modelfile *arg*
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where *arg* is the model filename.
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There are two types of model file formats that are read by BioEM:
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... | ... | @@ -13,6 +14,7 @@ There are two types of model file formats that are read by BioEM: |
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### Particle file
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The name of the experimental particle-image file is passed to the BioEM executable using the commandline:
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- --Particlesfile *arg*
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where *arg* is the particle-image filename.
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There are two types of particle file formats that are read by BioEM:
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1. **Default** *Text file*: Data are formatted as ”%8d%8d%16.8f” where the first two columns are the pixel indexes, and the third column is the intensity at that pixel. Multiple particles are read in the same file with the separator "PARTICLE". Pixel indexes should start at 0, and all pixels should be included.
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