[ci skip]

# Conflicts:
#	Manual/BioEM_Manual.pdf
#	Manual/BioEM_Manual.tex
#	Manual/Fig1_10Dec.eps
#	README.md
#	autotuner.cpp
#	bioem.cpp
#	bioem_algorithm.h
#	bioem_cuda.cu
#	doc/bib_manual.bib
#	include/autotuner.h
#	include/bioem.h
#	include/bioem_cuda_internal.h
#	include/defs.h
#	map.cpp
#	param.cpp

Although for pdflatex this issue generates just a warning, some other tools (e.g., pandoc) have bigger problems with it

profiling: improving NVTX profiling CPU+GPU execution

See merge request !5

nvtx+summary: improving nvtx by tracing initialization, which also fixes potential bogus first measurement of Projection for the summary

bugfix (from valgrind): even when CC is not used, it should be initialized to a…

See merge request !4

To enable it use undisclosed CMake option -DUSE_NVTX=ON (by default it is OFF)

bugfix (from valgrind): even when CC is not used, it should be initialized to a value (e.g. 0?) as it is printed later. Also some new code developments might use this CC value (by mistake), so better to keep it initialized

doc and copyright update

See merge request !3

minor fixes

See merge request !2