Commits · 048ebbce58111d851dd9cfa7ee8d1e3935e96cff · MPIBP-Hummer / BioEM

11 Nov, 2015 1 commit
- Polished creat map & others · 048ebbce
  Pilar Cossio authored Nov 11, 2015
  
  048ebbce
08 Oct, 2015 1 commit
- Debug anglefile name · a2c28842
  Pilar Cossio authored Oct 08, 2015
  
  a2c28842
29 Sep, 2015 1 commit
- Corrected and debugged Sep.29.15 · 8ae18d67
  Pilar Cossio authored Sep 29, 2015
  
  8ae18d67
17 Mar, 2015 1 commit
- Print map modifications · 9cd5275d
  Pilar Cossio authored Mar 17, 2015
  
  9cd5275d
13 Mar, 2015 1 commit
- Cleaning/debuging input · 987c9a7d
  Pilar Cossio authored Mar 13, 2015
  
  987c9a7d
12 Mar, 2015 1 commit
- Quaternions and input organization · f83b2d54
  Pilar Cossio authored Mar 12, 2015
  
  f83b2d54
26 Sep, 2014 1 commit
- Cross-Correlation Optimization and more options · df3ad671
  Pilar Cossio authored Sep 26, 2014
  
  df3ad671
24 Sep, 2014 1 commit
- Fourier Space CTF Maximizing Param · d53df5e6
  Pilar Cossio authored Sep 24, 2014
  
  d53df5e6
23 Sep, 2014 2 commits
- Good Random Number generator rutine for print map · 70793f6f
  Pilar Cossio authored Sep 23, 2014
  
  70793f6f
- New Print Map Possibility, Separate BioEM terms, and tidying up · 5f2c2856
  Pilar Cossio authored Sep 23, 2014
  
  5f2c2856
29 Jul, 2014 1 commit
- bioem.cpp · 8510f0b5
  Pilar Cossio authored Jul 29, 2014
  
  8510f0b5
24 Jul, 2014 4 commits
- More Debugging of CC Probability (Still Problems) · 7396b602
  Pilar Cossio authored Jul 24, 2014
  
  7396b602
- Add option to do multiple projections in parallel · b1e9df04
  David Rohr authored Jul 24, 2014
  
  b1e9df04
- Fix memory allocation for CC Probability · e9b15195
  David Rohr authored Jul 24, 2014
  
  e9b15195
- New Class for printing out Cross Correlations · 39d71b60
  Pilar Cossio authored Jul 24, 2014
  
  39d71b60
22 Jul, 2014 3 commits
- with define Pilar_debug · 067af626
  Pilar Cossio authored Jul 22, 2014
  
  067af626
- More parameters (norm & offset) for Max Prob · e49f5d72
  Pilar Cossio authored Jul 22, 2014
  
  e49f5d72
- Radius Projection variable · 0066cba5
  Pilar Cossio authored Jul 22, 2014
  
  0066cba5
07 Jul, 2014 8 commits
- improve debug output, use openmp during initialization where applicable, move... · 6a821c9b
  David Rohr authored Jul 08, 2014
```
improve debug output, use openmp during initialization where applicable, move fft scrach spaces to param class
```
  6a821c9b
- add printModel flag, get ride of unnecessary fourier transform for FFTALGO · e7310dea
  David Rohr authored Jul 07, 2014
  
  e7310dea
- finish first mpi implementation · 25d2e7dc
  David Rohr authored Jul 07, 2014
  
  25d2e7dc
- improve includes, include mpi.h first, start implementing mpi broadcast to distribute parameters · 8c3c729b
  David Rohr authored Jul 07, 2014
  
  8c3c729b
- create angular probabilites only if writeAngles set · 860031e3
  David Rohr authored Jul 07, 2014
  
  860031e3
- get rid of max number of model points constant · 88c93497
  David Rohr authored Jul 07, 2014
  
  88c93497
- code cleanup, move fft plan creation to function, remove file name strings from param class · 92a9eb72
  David Rohr authored Jul 07, 2014
  
  92a9eb72
- add check for cuda device · 093227f8
  David Rohr authored Jul 07, 2014
  
  093227f8
06 Jul, 2014 2 commits
- make FFTALGO default, add MPI initialization, move allocation of sumsquare... · 2b3aa359
  David Rohr authored Jul 06, 2014
```
make FFTALGO default, add MPI initialization, move allocation of sumsquare pointer to precalculate function
```
  2b3aa359
- improve build system, some related fixes · 6765875d
  David Rohr authored Jul 06, 2014
  
  6765875d
14 May, 2014 3 commits
- fix segfault if rotated model point out of map, improve debug message and options, fix memory leaks · beebec5d
  David Rohr authored May 14, 2014
  
  beebec5d
- fix GPUWORKLOAD parameter · 05e7d589
  David Rohr authored May 14, 2014
  
  05e7d589
- improve async cuda transfer, improve cuda tracing · 02123bb1
  David Rohr authored May 14, 2014
  
  02123bb1
20 Apr, 2014 5 commits
- fix file permissions · 645871e9
  David Rohr authored Apr 20, 2014
  
  645871e9
- fix file endings · 8639adb7
  David Rohr authored Apr 20, 2014
  
  8639adb7
- use host pinned memory for dma transfers · 89cc32a4
  David Rohr authored Apr 20, 2014
  
  89cc32a4
- Add dual stream mode for FFT-GPU mode to improve parallelism · 7a018205
  David Rohr authored Apr 20, 2014
  
  7a018205
- Fix allocation of FFTW scratch space, move deallocation of memory allocated in... · a65e74a6
  David Rohr authored Apr 20, 2014
```
Fix allocation of FFTW scratch space, move deallocation of memory allocated in configuration to cleanup function, get rid of MAX_ORIENT constant
```
  a65e74a6
19 Apr, 2014 4 commits
- remove some unnecessary memory allocation, replace by persistently allocated buffers · 6b401955
  David Rohr authored Apr 19, 2014
  
  6b401955
- implement alignment optimizations, currently disabled since they are not working correctly on GPU · 6e7cc545
  David Rohr authored Apr 19, 2014
  
  6e7cc545
- fix memory leak · 07546137
  David Rohr authored Apr 19, 2014
  
  07546137
- fix double precision mode · 461cf12a
  David Rohr authored Apr 19, 2014
  
  461cf12a