if(param_device.writeCC){if(!param_device.CCwithBayes){cout<<"Remark:: Not Using Bayesian method to store Cross-Correlation.\n Only Printing out Maximum\n";}
if(param_device.flipped){cout<<"Remark:: Micrographs are Flipped = Particles are white\n";}else{cout<<"Remark:: Micrographs are NOT Flipped = Particles are dark\n";}
}
...
...
@@ -475,9 +498,9 @@ int bioem_param::forprintBest(const char* fileinput)
withnoise=true;
cout<<"Including noise with standard deviation "<<stnoise<<"\n";
}
elseif(strcmp(token,"DO_AA_RADIUS")==0)//If projecting CA with amino-acid radius
elseif(strcmp(token,"NO_PROJECT_RADIUS")==0)//If projecting CA with amino-acid radius
{
doaaradius=true;
doaaradius=false;
cout<<"Projecting corresponding radius \n";
}
...
...
@@ -571,7 +594,15 @@ int bioem_param::CalculateGridsParam() //TO DO FOR QUATERNIONS
myfloat_tvoluang;
// Euler angle GRID
if(!doquater){
if(!notuniformangles){
cout<<"Calculating Grids in Euler Angles\n ";
myfloat_tgrid_alpha,cos_grid_beta;
intn=0;
...
...
@@ -613,14 +644,26 @@ int bioem_param::CalculateGridsParam() //TO DO FOR QUATERNIONS
charline[512]={0};
intn=0;
// First line tels the number of rows
input.getline(line,511);
chartmpVals[36]={0};
strncpy(tmpVals,line,12);
sscanf(tmpVals,"%d",&NotUn_angles);
cout<<"Number of Euler angles "<<NotUn_angles<<"\n";
if(NotUn_angles<1){
cout<<"\nNot defined number of Euler angles in INPUT file:"<<endl;