From f2525d5e86259dc7316b0b4ac25c608a2ee96e1a Mon Sep 17 00:00:00 2001 From: Pilar Cossio <pcos@phys01.bc.rzg.mpg.de> Date: Mon, 30 Nov 2015 10:17:58 +0100 Subject: [PATCH] Checks for PSF/CTF correspondance --- Tutorial/PrintMAP_CTF_A | 30 ++++++++++++++++++++++++++++++ Tutorial/PrintMAP_CTF_B | 30 ++++++++++++++++++++++++++++++ Tutorial/PrintMAP_CTF_C | 30 ++++++++++++++++++++++++++++++ Tutorial/PrintMAP_PSF_A | 32 ++++++++++++++++++++++++++++++++ Tutorial/PrintMAP_PSF_B | 31 +++++++++++++++++++++++++++++++ Tutorial/PrintMAP_PSF_C | 31 +++++++++++++++++++++++++++++++ 6 files changed, 184 insertions(+) create mode 100644 Tutorial/PrintMAP_CTF_A create mode 100644 Tutorial/PrintMAP_CTF_B create mode 100644 Tutorial/PrintMAP_CTF_C create mode 100644 Tutorial/PrintMAP_PSF_A create mode 100644 Tutorial/PrintMAP_PSF_B create mode 100644 Tutorial/PrintMAP_PSF_C diff --git a/Tutorial/PrintMAP_CTF_A b/Tutorial/PrintMAP_CTF_A new file mode 100644 index 0000000..ed39cb4 --- /dev/null +++ b/Tutorial/PrintMAP_CTF_A @@ -0,0 +1,30 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +BEST_CTF_DEFOCUS 4.8 +BEST_CTF_B_FACTOR 3500. +BEST_CTF_AMP 0.9 + +#USE_PSF +#BEST_PSF_PHASE 0.00579958170099887 +#BEST_PSF_ENVELOPE 0.00188373456557911 +#BEST_PSF_AMP 0.11 + +#WITHNOISE 0.05 +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS diff --git a/Tutorial/PrintMAP_CTF_B b/Tutorial/PrintMAP_CTF_B new file mode 100644 index 0000000..681b81c --- /dev/null +++ b/Tutorial/PrintMAP_CTF_B @@ -0,0 +1,30 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +BEST_CTF_DEFOCUS 2.8 +BEST_CTF_B_FACTOR 300. +BEST_CTF_AMP 0.3 + +#USE_PSF +#BEST_PSF_PHASE 0.00579958170099887 +#BEST_PSF_ENVELOPE 0.00188373456557911 +#BEST_PSF_AMP 0.11 + +#WITHNOISE 0.05 +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS diff --git a/Tutorial/PrintMAP_CTF_C b/Tutorial/PrintMAP_CTF_C new file mode 100644 index 0000000..0829ce7 --- /dev/null +++ b/Tutorial/PrintMAP_CTF_C @@ -0,0 +1,30 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +BEST_CTF_DEFOCUS 1.8 +BEST_CTF_B_FACTOR 100. +BEST_CTF_AMP 0.6 + +#USE_PSF +#BEST_PSF_PHASE 0.00579958170099887 +#BEST_PSF_ENVELOPE 0.00188373456557911 +#BEST_PSF_AMP 0.11 + +#WITHNOISE 0.05 +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS diff --git a/Tutorial/PrintMAP_PSF_A b/Tutorial/PrintMAP_PSF_A new file mode 100644 index 0000000..43f905d --- /dev/null +++ b/Tutorial/PrintMAP_PSF_A @@ -0,0 +1,32 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +#EST_CTF_DEFOCUS 5. +#BEST_CTF_B_FACTOR 4000. +#BEST_CTF_AMP 0.9 + +#FOR PARAMETERS ABOVE +USE_PSF +BEST_PSF_PHASE 0.0062 +BEST_PSF_ENVELOPE 0.0018 +BEST_PSF_AMP 0.71 +#0.993803211198498 FOR 0.2 + +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS + diff --git a/Tutorial/PrintMAP_PSF_B b/Tutorial/PrintMAP_PSF_B new file mode 100644 index 0000000..b909ad6 --- /dev/null +++ b/Tutorial/PrintMAP_PSF_B @@ -0,0 +1,31 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +#EST_CTF_DEFOCUS 2.8 +#BEST_CTF_B_FACTOR 300. +#BEST_CTF_AMP 0.3 + +#FOR PARAMETERS ABOVE +USE_PSF +BEST_PSF_PHASE 0.0113764699661241 +BEST_PSF_ENVELOPE 0.000492672438985998 +BEST_PSF_AMP 0.966025647607897 + +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS + diff --git a/Tutorial/PrintMAP_PSF_C b/Tutorial/PrintMAP_PSF_C new file mode 100644 index 0000000..0f24930 --- /dev/null +++ b/Tutorial/PrintMAP_PSF_C @@ -0,0 +1,31 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +#EST_CTF_DEFOCUS 2.8 +#BEST_CTF_B_FACTOR 300. +#BEST_CTF_AMP 0.3 + +#FOR PARAMETERS ABOVE +USE_PSF +BEST_PSF_PHASE 0.0178 +BEST_PSF_ENVELOPE 0.0005 +BEST_PSF_AMP 0.82 + +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS + -- GitLab