diff --git a/Tutorial/PrintMAP_CTF_A b/Tutorial/PrintMAP_CTF_A new file mode 100644 index 0000000000000000000000000000000000000000..ed39cb41552e7b8ba3a969d34babf06e9b43aa95 --- /dev/null +++ b/Tutorial/PrintMAP_CTF_A @@ -0,0 +1,30 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +BEST_CTF_DEFOCUS 4.8 +BEST_CTF_B_FACTOR 3500. +BEST_CTF_AMP 0.9 + +#USE_PSF +#BEST_PSF_PHASE 0.00579958170099887 +#BEST_PSF_ENVELOPE 0.00188373456557911 +#BEST_PSF_AMP 0.11 + +#WITHNOISE 0.05 +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS diff --git a/Tutorial/PrintMAP_CTF_B b/Tutorial/PrintMAP_CTF_B new file mode 100644 index 0000000000000000000000000000000000000000..681b81c484825ab8d951e96f7c89b37baabf0f63 --- /dev/null +++ b/Tutorial/PrintMAP_CTF_B @@ -0,0 +1,30 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +BEST_CTF_DEFOCUS 2.8 +BEST_CTF_B_FACTOR 300. +BEST_CTF_AMP 0.3 + +#USE_PSF +#BEST_PSF_PHASE 0.00579958170099887 +#BEST_PSF_ENVELOPE 0.00188373456557911 +#BEST_PSF_AMP 0.11 + +#WITHNOISE 0.05 +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS diff --git a/Tutorial/PrintMAP_CTF_C b/Tutorial/PrintMAP_CTF_C new file mode 100644 index 0000000000000000000000000000000000000000..0829ce7fb161e1a3446104d4650c722b7b0dc2fc --- /dev/null +++ b/Tutorial/PrintMAP_CTF_C @@ -0,0 +1,30 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +BEST_CTF_DEFOCUS 1.8 +BEST_CTF_B_FACTOR 100. +BEST_CTF_AMP 0.6 + +#USE_PSF +#BEST_PSF_PHASE 0.00579958170099887 +#BEST_PSF_ENVELOPE 0.00188373456557911 +#BEST_PSF_AMP 0.11 + +#WITHNOISE 0.05 +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS diff --git a/Tutorial/PrintMAP_PSF_A b/Tutorial/PrintMAP_PSF_A new file mode 100644 index 0000000000000000000000000000000000000000..43f905d18bf088280138b32801c2d4d41280ef6c --- /dev/null +++ b/Tutorial/PrintMAP_PSF_A @@ -0,0 +1,32 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +#EST_CTF_DEFOCUS 5. +#BEST_CTF_B_FACTOR 4000. +#BEST_CTF_AMP 0.9 + +#FOR PARAMETERS ABOVE +USE_PSF +BEST_PSF_PHASE 0.0062 +BEST_PSF_ENVELOPE 0.0018 +BEST_PSF_AMP 0.71 +#0.993803211198498 FOR 0.2 + +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS + diff --git a/Tutorial/PrintMAP_PSF_B b/Tutorial/PrintMAP_PSF_B new file mode 100644 index 0000000000000000000000000000000000000000..b909ad6b85069bd7094d6ef7ab7700f8885ced33 --- /dev/null +++ b/Tutorial/PrintMAP_PSF_B @@ -0,0 +1,31 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +#EST_CTF_DEFOCUS 2.8 +#BEST_CTF_B_FACTOR 300. +#BEST_CTF_AMP 0.3 + +#FOR PARAMETERS ABOVE +USE_PSF +BEST_PSF_PHASE 0.0113764699661241 +BEST_PSF_ENVELOPE 0.000492672438985998 +BEST_PSF_AMP 0.966025647607897 + +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS + diff --git a/Tutorial/PrintMAP_PSF_C b/Tutorial/PrintMAP_PSF_C new file mode 100644 index 0000000000000000000000000000000000000000..0f24930c74cc15c995a06633944b608cc073d184 --- /dev/null +++ b/Tutorial/PrintMAP_PSF_C @@ -0,0 +1,31 @@ +##### Micrograph Parameters ####### +NUMBER_PIXELS 100 +PIXEL_SIZE 2.74 + +######## Center displacement ################ +BEST_DX 0 +BEST_DY 0 + +######## Normalization and Offset ################ +BEST_NORM 1. +BEST_OFFSET 0. + +######## Euler Angles ################ +BEST_ALPHA 0.1122 +BEST_BETA 0.02361 +BEST_GAMMA 1.4586 + +######## Using PSF ################ +#EST_CTF_DEFOCUS 2.8 +#BEST_CTF_B_FACTOR 300. +#BEST_CTF_AMP 0.3 + +#FOR PARAMETERS ABOVE +USE_PSF +BEST_PSF_PHASE 0.0178 +BEST_PSF_ENVELOPE 0.0005 +BEST_PSF_AMP 0.82 + +########## Printing the 3d Model rotation ########### +#PRINT_ROTATED_MODELS +